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Bug #5903

closed

[gff2fj] Does not correctly label no-calls at end of cytogenetic band

Added by Abram Connelly over 9 years ago. Updated over 8 years ago.

Status:
Closed
Priority:
Normal
Assigned To:
-
Target version:
Future sprints (Lightning)
Story points:
-

Description

68fe4db9013109327ebf52cadcd09435+4522998/hu016B28.fj/213.fj.gz on tb05z is missing it's last tile. On further inspection, the last portion of the GFF has no entry (therefore a 'no-call') for GFF position chr11:134946116 onwards. This lands in the middle of the next to last tile (213.00.41d8). The resulting 213.00.41d8 tile only has 261 base pairs out of the reference 463. Further, the hu016B28 213.00.41d8 tile does not have any other indel or no-call information.

The proper behavior is to explicitly fill in no-calls till the end and have the last tile full of no-calls.

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