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Idea #5904
closed
[gff2fj] Add in error checks to check common errors and do sanity checks on resulting FastJ files
Start date:
05/04/2015
Due date:
Story points:
-
Description
gff2fj or the pipeline that uses it, should have some basic error checking to make sure the resulting tiles make sense. Some common errors are:
- Tiles at the end of paths or cytogenetic bands sometimes don't appear
- Tiles at the end of paths or cytogenetic bands don't have proper no-call information
Updated by Sarah Guthrie about 9 years ago
- Tracker changed from Feature to Idea
- Project changed from 39 to Lightning
Tile loss has not occurred after introduction of PASTA.
Updated by Sarah Guthrie about 9 years ago
- Target version set to Future sprints (Lightning)
Updated by Abram Connelly over 8 years ago
- Status changed from New to Closed
The pasta tools implement GFF conversion:
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