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Idea #5904

closed

[gff2fj] Add in error checks to check common errors and do sanity checks on resulting FastJ files

Added by Abram Connelly over 9 years ago. Updated over 8 years ago.

Status:
Closed
Priority:
Normal
Assigned To:
-
Target version:
Future sprints (Lightning)
Start date:
05/04/2015
Due date:
Story points:
-

Description

gff2fj or the pipeline that uses it, should have some basic error checking to make sure the resulting tiles make sense. Some common errors are:

  • Tiles at the end of paths or cytogenetic bands sometimes don't appear
  • Tiles at the end of paths or cytogenetic bands don't have proper no-call information
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