Story #5983

align2gvcf test suite

Added by Abram Connelly about 4 years ago. Updated almost 3 years ago.

Status:
Closed
Priority:
Normal
Assigned To:
-
Start date:
05/08/2015
Due date:
% Done:

0%

Estimated time:
Story points:
2.0

Description

Make test suite for program `align2gvcf` that uses 2 FASTJ tile entries and generates gVCF output.

Make tests to exercise both the normal and corner cases of gVCF output from align2gvcf

History

#1 Updated by Sarah Guthrie over 3 years ago

  • Project changed from Curoverse Science to Lightning

#2 Updated by Sarah Guthrie over 3 years ago

  • Description updated (diff)

#3 Updated by Sarah Guthrie over 3 years ago

  • Tracker changed from Feature to Story

#4 Updated by Sarah Guthrie over 3 years ago

  • Target version set to Future sprints (Lightning)

#5 Updated by Abram Connelly almost 3 years ago

  • Status changed from New to Closed

Basic tests have been added though not automated. See:

https://github.com/abeconnelly/pasta/blob/master/pasta/assay/gvcf_test.sh

align2gvcf has been replaced by the pasta tool in that repo.

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