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Idea #5983

closed

align2gvcf test suite

Added by Abram Connelly over 9 years ago. Updated over 8 years ago.

Status:
Closed
Priority:
Normal
Assigned To:
-
Target version:
Future sprints (Lightning)
Start date:
05/08/2015
Due date:
Story points:
2.0

Description

Make test suite for program `align2gvcf` that uses 2 FASTJ tile entries and generates gVCF output.

Make tests to exercise both the normal and corner cases of gVCF output from align2gvcf

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 #1

Updated by Sarah Guthrie about 9 years ago

  • Project changed from 39 to Lightning
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 #2

Updated by Sarah Guthrie about 9 years ago

  • Description updated (diff)
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 #3

Updated by Sarah Guthrie about 9 years ago

  • Tracker changed from Feature to Idea
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 #4

Updated by Sarah Guthrie about 9 years ago

  • Target version set to Future sprints (Lightning)
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 #5

Updated by Abram Connelly over 8 years ago

  • Status changed from New to Closed

Basic tests have been added though not automated. See:

https://github.com/abeconnelly/pasta/blob/master/pasta/assay/gvcf_test.sh

align2gvcf has been replaced by the pasta tool in that repo.

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