Project

General

Profile

Actions

Idea #6228

closed

gVCF to FASTJ converter

Added by Abram Connelly almost 9 years ago. Updated over 7 years ago.

Status:
Closed
Priority:
Normal
Assigned To:
Story points:
3.0
Actions #1

Updated by Abram Connelly almost 9 years ago

  • Story points set to 3.0
Actions #2

Updated by Abram Connelly almost 9 years ago

  • Assigned To set to Abram Connelly
Actions #3

Updated by Abram Connelly almost 9 years ago

Current idea is to write a simple python program using htslib to convert GVCF to GFF and use the GFF as input to the standard pipeline.

Actions #4

Updated by Abram Connelly almost 9 years ago

  • Target version changed from 2015-06-23 sprint to 2015-07-10 sprint
Actions #5

Updated by Sarah Guthrie almost 9 years ago

  • Target version changed from 2015-07-10 sprint to 2015-07-31 sprint
Actions #6

Updated by Abram Connelly over 8 years ago

  • Target version deleted (2015-07-31 sprint)
Actions #7

Updated by Sarah Guthrie over 8 years ago

  • Target version set to 2015-08-21 sprint
Actions #8

Updated by Abram Connelly over 8 years ago

  • Target version changed from 2015-08-21 sprint to 2015-09-11 sprint
Actions #9

Updated by Sarah Guthrie over 8 years ago

  • Target version changed from 2015-09-11 sprint to 2015-10-02 sprint
Actions #10

Updated by Sarah Guthrie over 8 years ago

  • Target version changed from 2015-10-02 sprint to 111
Actions #11

Updated by Sarah Guthrie over 8 years ago

  • Project changed from 39 to Lightning
  • Subject changed from GVCF to FastJ converter to gVCF to FASTJ converter
  • Target version changed from 111 to 2015-10-23 Lightning sprint
Actions #12

Updated by Abram Connelly over 8 years ago

  • Target version changed from 2015-10-23 Lightning sprint to 2015-11-13 Lightning sprint
Actions #13

Updated by Sarah Guthrie over 8 years ago

  • Target version changed from 2015-11-13 Lightning sprint to 2015-12-04 Lightning sprint
Actions #14

Updated by Abram Connelly over 7 years ago

  • Status changed from New to Closed

This has been completed. The pasta repo provides basic tools for this and the tile server implements tile to gVCF conversion.

Actions

Also available in: Atom PDF