Arvados

A quick version from the port-a-pipeline wiki.

• Install on Docker
  

  Pull an Arvados-base docker image (I would prefer bcosc/arv-base because I know that works)
  Install wget, wget file into docker image.
  Build tool as normal, install dependencies as needed.
  *note path of tool binary*
  Commit image
  Arv keep docker to upload image
  

• Put binary in git repo (Only standalone binaries please, we do not want to have a huge git repo [I think...])
  

  Copy binary or any of your scripts to your git repo.
  Git add
  Git commit
  Git push
  If using run-command, specify path to binary in a command
  If using python SDK, specify path in a variable.
  

• Put binary in keep
  

  Input your pre-compiled binary along with the folder it was built in to keep
  Arv-put
  If using run-command, specify path to binary in a command
  If using python SDK, specify path in a variable.