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Story #7078

closed

[Tyler] Design scope of small application

Added by Sarah Guthrie almost 7 years ago. Updated almost 7 years ago.

Status:
Closed
Priority:
Normal
Assigned To:
Sarah Guthrie
Target version:
-
Start date:
09/10/2015
Due date:
% Done:

100%

Estimated time:
(Total: 11.00 h)
Story points:
0.5

Description

We want an application that when given a well-sequenced human sequence and a tag set returns the unique identifier(s) of this hash. This application, currently named Tyler because names are helpful, should also be documented.

Decisions that must be made:
  • Implementation - online or downloadable project or both
    • If online, should it be a project on su92l?
  • Where should this be documented?
  • How do we respond to missing information? (At least one tag is observed, but dangling sequence exists)
  • What should be returned if no tags match?
  • What should be returned if a tag exists, but it has a variant on it?
  • What should be returned if two far apart tags are observed close? (ie. How should we treat cancer genomes)
  • Is this feasible for the next sprint?
  • What is an acceptable amount time for this application to take?
  • How will Tyler connect with the HGVM instance?

HGVM graph visualization demo


Subtasks 2 (0 open2 closed)

Task #7096: Write documentationClosedSarah Guthrie09/10/2015

Actions
Task #7095: Meet with SashaClosedSarah Guthrie09/10/2015

Actions
Actions #1

Updated by Sarah Guthrie almost 7 years ago

  • Target version changed from 2015-10-02 sprint to 2015-09-11 sprint
Actions #2

Updated by Sarah Guthrie almost 7 years ago

  • Story points changed from 1.0 to 2.0
Actions #3

Updated by Sarah Guthrie almost 7 years ago

  • Description updated (diff)
  • Assigned To set to Sarah Guthrie
  • Story points changed from 2.0 to 2.5
Actions #4

Updated by Sarah Guthrie almost 7 years ago

  • Story points changed from 2.5 to 2.0
Actions #5

Updated by Sarah Guthrie almost 7 years ago

  • Description updated (diff)
Actions #6

Updated by Sarah Guthrie almost 7 years ago

  • Status changed from New to In Progress
Actions #7

Updated by Sarah Guthrie almost 7 years ago

  • Story points changed from 2.0 to 0.5
Actions #8

Updated by Sarah Guthrie almost 7 years ago

  • Status changed from In Progress to Closed
Actions #9

Updated by Sarah Guthrie almost 7 years ago

  • Project changed from 39 to Lightning
  • Target version deleted (2015-09-11 sprint)
Actions

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