Story #7079

[Tyler] Implementation

Added by Sarah Guthrie almost 4 years ago. Updated about 1 year ago.

Status:
Closed
Priority:
Low
Assigned To:
-
Start date:
Due date:
% Done:

0%

Estimated time:
Story points:
3.0

History

#1 Updated by Sarah Guthrie over 3 years ago

  • Target version changed from 2015-10-02 sprint to 111

#2 Updated by Sarah Guthrie over 3 years ago

  • Priority changed from Normal to Low
  • Target version deleted (111)

Tyler is a FASTA --> Tiling service

We have decided that it creates problems by extracting the FASTA sequences away from their context. Without aligning the sequences, partial tiles become incredibly common, as do poorly sequenced regions. Given that this use case is not very common and is strictly less powerful than BLAST, the only reason to implement Tyler is if it is an easier task than aligning FASTQ to Tiles or aligning called genomes (VCF, GFF, etc) to Tiles. We have decided this is not the case, so until the FASTA --> Tiling service is requested, this is not going to be implemented.

Documentation for Tyler may be found at #7078

#3 Updated by Sarah Guthrie over 3 years ago

  • Project changed from Curoverse Science to Lightning

#4 Updated by Sarah Guthrie over 3 years ago

  • Target version set to Future sprints (Lightning)

#5 Updated by Sarah Zaranek about 1 year ago

  • Status changed from New to Closed

Closing this out for now.

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