Story #8773

[GATK Queue] Support a mechanism to redirect stderr for children

Added by Brett Smith over 2 years ago. Updated over 1 year ago.

Status:
Closed
Priority:
Normal
Assigned To:
-
Category:
-
Target version:
Start date:
Due date:
% Done:

0%

Estimated time:
Story points:
-

History

#1 Updated by Bryan Cosca about 2 years ago

In wx7k5-d1hrv-8rh74st484xax0g, I'm using ["--logging_level", "ERROR"] to supress WARN logs. In wx7k5-8i9sb-mz4pjsuxgvqsef5, the warning did not propagate to the java command.

#2 Updated by Bryan Cosca about 2 years ago

Peter found the quick fix by updating the scala script that queue uses to include the logging parameter.

#3 Updated by Brett Smith about 2 years ago

  • Assigned To set to Brett Smith

#4 Updated by Brett Smith about 2 years ago

  • Assigned To deleted (Brett Smith)

Lower priority because we solved the immediate need by editing the specific Scala script.

#5 Updated by Tom Clegg over 1 year ago

  • Status changed from New to Closed

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