Story #8773

[GATK Queue] Support a mechanism to redirect stderr for children

Added by Brett Smith over 1 year ago. Updated 4 months ago.

Status:ClosedStart date:
Priority:NormalDue date:
Assignee:-% Done:


Target version:Arvados Future Sprints
Story points-
Velocity based estimate-


#1 Updated by Bryan Cosca over 1 year ago

In wx7k5-d1hrv-8rh74st484xax0g, I'm using ["--logging_level", "ERROR"] to supress WARN logs. In wx7k5-8i9sb-mz4pjsuxgvqsef5, the warning did not propagate to the java command.

#2 Updated by Bryan Cosca over 1 year ago

Peter found the quick fix by updating the scala script that queue uses to include the logging parameter.

#3 Updated by Brett Smith over 1 year ago

  • Assignee set to Brett Smith

#4 Updated by Brett Smith about 1 year ago

  • Assignee deleted (Brett Smith)

Lower priority because we solved the immediate need by editing the specific Scala script.

#5 Updated by Tom Clegg 4 months ago

  • Status changed from New to Closed

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