Feature #8700: Arvados job/pipeline generates GET-Evidence HTML report from VCF
The GET-Evidence pipeline is producing HTML reports for VCF and non-VCF (e.g. CGI-Var) data files.
An example run with a data file that was converted to VCF from 23andMe:
An example run with a date file that was originally a CGI-Var file:
The pipeline template is su92l-p5p6p-2hdis7roemcaokr
The three repositories for each leg of the pipeline can be found at:
This closely resembles how the pipeline was setup. The initial report is generated with
GETEvidenceReport, then refreshed with the latest GET-Evidence database by running
GETEvidenceReportRefresh. Finally, the HTML is created with
GETEvidenceReportHTML. The major differences from the previous incarnation of the GET-Evidence pipeline from this one are that this one is able to injects VCF and create a report and the final report resides completely in Arvados, rather than the GET-Evidence server.