Bug #8879

[CWL Runner] arvados-cwl-runner --submit --project-uuid does not place new job in specified project

Added by Sarah Guthrie about 5 years ago. Updated about 5 years ago.

Status:
Resolved
Priority:
Normal
Assigned To:
Brett Smith
Category:
-
Target version:
Start date:
04/05/2016
Due date:
% Done:

100%

Estimated time:
(Total: 0.00 h)
Story points:
0.5

Description

I ran the following in su92l shell:

arvados-cwl-runner --submit --ignore-docker-for-reuse --project-uuid=su92l-j7d0g-kxsmk1a0bgurbi9 --no-wait --enable-reuse main-bwa-platypus-NA12878.cwl main-bwa-platypus-NA12878-samples.json 
/home/sguthrie/venv/bin/arvados-cwl-runner 1.0.20160401183214, arvados-python-client 0.1.20160331153549, cwltool 1.0.20160331184641
2016-04-04 17:38:58 arvados.arv-run[21850] INFO: Upload local files: "wf-variantcall.cwl" "wf-alignment.cwl" "steps/combine_sample_regions.cwl" "steps/concat_batch_variantcalls.cwl" "steps/postprocess_alignment.cwl" "steps/prep_samples.cwl" "steps/get_parallel_regions.cwl" "steps/merge_split_alignments.cwl" "steps/batch_for_variantcall.cwl" "steps/variantcall_batch_region.cwl" "steps/process_alignment.cwl" "steps/prep_align_inputs.cwl" "steps/compare_to_rm.cwl" "steps/postprocess_variants.cwl" "main-bwa-platypus-NA12878.cwl" 
2016-04-04 17:38:59 arvados.arv-run[21850] INFO: Uploaded to su92l-4zz18-6n4wlyrgqf6znvl
2016-04-04 17:39:04 arvados.cwl-runner[21850] INFO: Submitted job su92l-8i9sb-sjie1gntriubkj6

The local file collection was uploaded to the correct project, but the job was not submitted with the correct project owner


Subtasks

Task #8887: Review 8879-cwl-runner-job-owner-wipResolvedBrett Smith

Associated revisions

Revision ae6ced57
Added by Brett Smith about 5 years ago

Merge branch '8879-cwl-runner-job-owner-wip'

Closes #8879, #8887.

History

#1 Updated by Brett Smith about 5 years ago

  • Target version set to Arvados Future Sprints

#2 Updated by Brett Smith about 5 years ago

  • Story points set to 0.5

The jobs().create() call in RunnerJob.run() does not specify an owner_uuid. That needs to be fixed.

#3 Updated by Sarah Guthrie about 5 years ago

  • Description updated (diff)

#4 Updated by Brett Smith about 5 years ago

  • Status changed from New to In Progress
  • Assigned To set to Brett Smith
  • Target version changed from Arvados Future Sprints to 2016-04-13 sprint

#5 Updated by Tom Clegg about 5 years ago

02a2277 LGTM, thanks

#6 Updated by Brett Smith about 5 years ago

  • Status changed from In Progress to Resolved
  • % Done changed from 0 to 100

Applied in changeset arvados|commit:ae6ced575905d226963516bb7780c2bae391621c.

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