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Feature #9241

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Add "Genes for Good" support for genome report

Added by Abram Connelly about 6 years ago. Updated about 6 years ago.

Status:
New
Priority:
Normal
Assigned To:
-
Target version:
-
Start date:
05/19/2016
Due date:
% Done:

0%

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Description

Some participants are uploading Genes for Good files. The format is very similar to 23andMe with some minor differences (difference header text, not all lines have rsids).

It would be nice to add functionality to the GET-Evidence reports to accommodate the "Genes for Good" format.

Actions #1

Updated by Abram Connelly about 6 years ago

There is gtg branch on github.com/abeconnelly/GETEvidenceReport that implements this feature. Currently this repo is being used for Veritas VCF reports only. We might be able to replace just this component (job) in the current pipeline being used by the GET-Evidence machine without having to replace the whole pipeline.

Participant hu76380E has uploaded their Genes for Good dataset which can be used as a reference.

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