Added by Tom Clegg almost 13 years ago. Updated almost 13 years ago.
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zcat ALL.wgs.phase1_release_v3.20101123.snps_indels_sv.sites.vcf.gz | \ egrep -v '^#' | \ cut -f3 | \ egrep ^rs | \ sort > 1kg_dbsnp_ids echo 'select variant_rsid from variants where variant_gene is null' | \ mysql -u evidence -p evidence | \ sed -e 's/^/rs/' | \ sort > get-evidence_dbsnp_ids join get-evidence_dbsnp_ids 1kg_dbsnp_ids > 1kg_and_get-evidence_dbsnp_ids
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