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# Project Tracker Status Priority Subject Assigned To Updated % Done Hours
435 GET-Evidence Support In Progress High Work with Carlos et al. to integrate BioNotate annotations into GET-Evidence Tom Clegg 07/28/2011 12:35 PM

475 GET-Evidence Feature New High add “user manager” (control membership in groups: admin, curator, lab member) Tom Clegg 02/15/2011 03:17 PM

16850 Arvados Bug In Progress Normal [keep-web] Add KeyCount field to ListObjects response Tom Clegg 09/21/2020 03:29 PM

16809 Arvados Story In Progress Normal [keep-web] Check V4 signature on S3 requests, don't require sending entire Arvados token as AccessKey Tom Clegg 09/21/2020 02:48 PM

16669 Arvados Feature In Progress Normal Accept OpenID Connect access token Tom Clegg 09/16/2020 03:09 PM

16764 Arvados Task New Normal Review Tom Clegg 09/09/2020 06:17 PM

16161 Arvados Feature New Normal easy aggregate metrics with prometheus Tom Clegg 09/09/2020 05:33 PM

16606 Arvados Task New Normal Review Tom Clegg 09/09/2020 03:12 PM

16546 Arvados Task New Normal Review Tom Clegg 09/09/2020 03:12 PM

16306 Arvados Story In Progress Normal [install] Build all-in-one server package using arvados-server install/boot in production mode Tom Clegg 09/09/2020 03:02 PM

16552 Arvados Story New Normal arvados-server config wizard for single node install Tom Clegg 09/09/2020 03:02 PM

16727 Arvados Bug In Progress Normal [FUSE] [cgofuse] Refresh signatures / reload collection instead of using expired blob signatures Tom Clegg 08/19/2020 03:03 PM

12308 Arvados Story In Progress Normal [FUSE] Golang-based fuse driver Tom Clegg 04/23/2020 03:12 PM

16322 Arvados Task In Progress Normal Review 16048-reload-config Tom Clegg 04/15/2020 02:23 PM

11460 Arvados Bug In Progress Normal [SDK] avoid interfering with socket open/close - use pycurl sockoptfunction instead of opensocketfunction Tom Clegg 03/06/2020 06:41 PM

13355 Arvados Task New Normal Review Tom Clegg 02/12/2020 04:31 PM

9541 Arvados Feature In Progress Normal [Keep] Handle HEAD requests without allocating a data buffer Tom Clegg 01/29/2020 03:10 PM

15912 Arvados Task New Normal Review Tom Clegg 12/16/2019 09:19 PM

15505 Arvados Task New Normal Review Tom Clegg 08/14/2019 03:38 PM

15459 Arvados Task In Progress Normal Review 15003-real-configs-flagged-unknown Tom Clegg 07/10/2019 08:56 PM

8707 Tapestry Feature In Progress Normal Arvados job: download data from remote site into Keep Tom Clegg 05/06/2019 05:04 PM

5454 Arvados Task New Normal Prototype keep-to-s3 gateway Tom Clegg 02/13/2019 06:04 PM

11183 Arvados Feature In Progress Normal [Deployment] Use consul to report health of services/components Tom Clegg 07/03/2018 03:14 PM

13388 Arvados Feature New Normal [Epic] Zero-downtime upgrade Tom Clegg 04/25/2018 04:21 PM

13389 Arvados Feature New Normal [Epic] Easy cluster install Tom Clegg 04/25/2018 02:42 PM

11571 Arvados Task New Normal Review Tom Clegg 12/06/2017 08:30 PM

11679 Arvados Bug New Normal [Workbench] Logs containers with undefined exit code Tom Clegg 08/16/2017 07:38 PM

4611 Arvados Task New Normal Update doc to match current plans Tom Clegg 03/09/2017 09:54 PM

3192 Arvados Task New Normal Clarify requirements/implementation Tom Clegg 03/09/2017 09:35 PM

5861 Arvados Task New Normal Allow editing pipeline parameters in workbench Tom Clegg 02/14/2017 08:00 PM

5853 Arvados Task New Normal Document pipeline parameters API Tom Clegg 02/14/2017 08:00 PM

5862 Arvados Task New Normal Fill in component params from pipeline params in a-r-p-i Tom Clegg 02/14/2017 08:00 PM

10046 Arvados Task New Normal rails systemd unit or nginx config Tom Clegg 09/28/2016 07:05 PM

10073 Arvados Task New Normal Transition plan Tom Clegg 09/28/2016 07:05 PM

9017 Arvados Feature In Progress Normal [Tests] Make slow tests optional (e.g., run-tests.sh --short) Tom Clegg 05/11/2016 06:26 PM

9158 Arvados Task New Normal Skip expensive setup/teardown, too Tom Clegg 05/11/2016 06:03 PM

9103 Arvados Task In Progress Normal Skip collection performance tests in Python SDK suite Tom Clegg 05/11/2016 06:03 PM

8689 Tapestry Feature In Progress Normal Trigger an arvados job to retrieve the data and import it into Keep Tom Clegg 04/21/2016 02:21 PM

9026 Tapestry Task New Normal Retrieve coverage metadata from get-evidence jobs Tom Clegg 04/20/2016 08:19 PM

8697 Tapestry Feature In Progress Normal Check for finished download/processing jobs Tom Clegg 03/24/2016 06:48 PM

8796 Tapestry Task New Normal Poll arvados for finished pipelines, resolve/reject relevant ArvadosJob Tom Clegg 03/24/2016 06:48 PM

8794 Tapestry Task New Normal Notify user that transfer has been initiated Tom Clegg 03/24/2016 06:47 PM

8126 Arvados Task New Normal Review Tom Clegg 01/06/2016 08:41 PM

6924 Tapestry Bug In Progress Normal Google survey participation link should work for newly created surveys, too Tom Clegg 08/06/2015 07:04 PM

6915 Tapestry Task New Normal review 6914-prepopulate-twin-recontact-fields-when-reconsenting Tom Clegg 08/05/2015 09:38 PM

6126 Arvados Task New Normal Decide URL and advice for appropriate next step when in "pipeline goal" mode Tom Clegg 06/10/2015 06:13 PM

6124 Arvados Task New Normal Add "goal mode" infrastructure Tom Clegg 06/10/2015 06:13 PM

6125 Arvados Task New Normal Enter goal mode when hitting Run on a pipeline template Tom Clegg 06/10/2015 06:13 PM

6127 Arvados Task New Normal Preserve template goal through login->UA->profile->back-to-work process, and then convert template to instance goal Tom Clegg 06/10/2015 06:13 PM

5938 Arvados Task New Normal Handle normal container startup and shutdown races without logging an error/notice or missing the first interval Tom Clegg 05/20/2015 07:11 PM

5523 Arvados Bug New Normal [Crunch] crunchstat should not report errors during normal timing races Tom Clegg 05/20/2015 07:11 PM

4456 Arvados Feature New Normal [Workbench] Provide more feedback about when a queued job is likely to start. Tom Clegg 05/19/2015 10:01 PM

5860 Arvados Task New Normal Provide detail about expected information/presentation Tom Clegg 05/19/2015 10:01 PM

5560 Arvados Bug New Normal [DRAFT] [API] Good API for accessing the old_ and new_attributes in Logs table properties column Tom Clegg 04/01/2015 06:38 PM

3189 Arvados Task New Normal [Blocker] Clarify design/requirements Tom Clegg 10/03/2014 04:52 PM

3304 Arvados Story New Normal [Workbench] Add checkboxes to multi-type chooser modal to filter by object type Tom Clegg 08/27/2014 07:05 AM

3190 Arvados Task New Normal [Blocker] Clarify design/requirements Tom Clegg 07/16/2014 05:15 PM

1471 Tapestry Bug New Normal Researcher > Kits table content loads very slowly Tom Clegg 10/28/2013 04:46 PM

1490 GET-Evidence Support New Normal GeneTests Tom Clegg 08/27/2013 01:29 AM

500 GET-Evidence Bug New Normal Trait-o-matic GET-E importer "AttributeError: 'tuple' object has no attribute 'remove'" Tom Clegg 11/07/2012 10:46 AM

1104 GET-Evidence Bug New Normal Division by zero warning when computing progress percentage Tom Clegg 08/18/2012 06:45 PM

925 GET-Evidence Feature In Progress Normal Add EVS frequency data Tom Clegg 05/16/2012 03:30 PM

490 GET-Evidence Feature In Progress Normal Classify web-hits as relevant/not-relevant Tom Clegg 09/01/2011 07:16 PM

426 GET-Evidence Feature In Progress Normal Use compute cloud for back-end processing Tom Clegg 04/08/2011 03:06 AM

494 GET-Evidence Bug New Normal Warning about automatic logout Tom Clegg 02/16/2011 02:58 PM

479 GET-Evidence Bug New Normal NSF-Lys702Asn shows wrong hapmap frequency Tom Clegg 02/16/2011 02:57 PM

481 GET-Evidence Feature New Normal Test Internet Explorer, possibly use Chrome Frame to make editing features work in IE Tom Clegg 02/16/2011 02:57 PM

482 GET-Evidence Feature New Normal add “affects self (hom or dominant)” checkbox (vs “affects offspring”) on result page Tom Clegg 02/16/2011 02:57 PM

483 GET-Evidence Feature New Normal Handle/prevent edit conflicts more effectively Tom Clegg 02/16/2011 02:56 PM

484 GET-Evidence Feature New Normal Figure out better solution to HNF1A-Ser574Gly (genomes) vs. HNF1A-Gly574Ser (omim) Tom Clegg 02/16/2011 02:56 PM

486 GET-Evidence Feature New Normal support publications without PMIDs (other namespaces? original contributions? OWW?) Tom Clegg 02/16/2011 02:56 PM

488 GET-Evidence Feature New Normal Allow non-nsSNP variants Tom Clegg 02/16/2011 02:56 PM

498 GET-Evidence Feature New Normal Show nucleotide positions for all dbSNP-keyed variants Tom Clegg 02/16/2011 02:56 PM

499 GET-Evidence Feature New Normal Merge rsids and AA-variant pages Tom Clegg 02/16/2011 02:55 PM

501 GET-Evidence Feature New Normal GWAS - mark existing "not reviewed" variants as "pathogenic" Tom Clegg 02/16/2011 02:55 PM

502 GET-Evidence Feature New Normal Update PGP2,3,5,7,8,10 on snp.med and evidence.PG Tom Clegg 02/16/2011 02:55 PM

507 GET-Evidence Feature New Normal Report of insufficiently evaluated variants meeting autoscore thresholds Tom Clegg 02/16/2011 02:54 PM

509 GET-Evidence Bug New Normal Clean up runt variants imported by PharmGKB Tom Clegg 02/16/2011 02:54 PM

518 GET-Evidence Bug New Normal Handle "data set is no longer public" during import_genomes Tom Clegg 02/16/2011 02:54 PM

519 GET-Evidence Feature New Normal Use "BED" / "BED Detail" format instead of GFF Tom Clegg 02/16/2011 02:53 PM

506 GET-Evidence Bug New Normal Standardize gene names (correctly) Tom Clegg 02/16/2011 02:45 PM

485 GET-Evidence Feature New Normal Don't let users add variant pages for genes that aren't in knownGene Tom Clegg 02/16/2011 02:32 PM

517 GET-Evidence Feature New Normal Genome links should indicate which data set(s) actually support the variant call Tom Clegg 02/15/2011 03:17 PM

515 GET-Evidence Bug New Normal 'Undefined' notices Tom Clegg 02/15/2011 03:17 PM

514 GET-Evidence Bug New Normal ereg Deprecated in PHP 5.3.0 Tom Clegg 02/15/2011 03:17 PM

503 GET-Evidence Bug New Normal Import aachanges starting with termination (eg. METTL8-X379R) Tom Clegg 02/15/2011 03:17 PM

495 GET-Evidence Bug New Normal Allele frequency missing for rs41281314 Tom Clegg 02/15/2011 03:17 PM

493 GET-Evidence Feature New Normal Variant and Gene Removal Tom Clegg 02/15/2011 03:17 PM

478 GET-Evidence Bug New Normal Keep "overall odds ratio" updated when editing individual sets of OR figures Tom Clegg 02/15/2011 03:17 PM

451 longupload Bug New Normal handle xmlhttprequest timeouts gracefully Tom Clegg 01/13/2011 07:04 PM

497 GET-Evidence Feature New Low Import and process raw reads for YRI trio data Tom Clegg 02/16/2011 02:28 PM

496 GET-Evidence Feature New Low Import and process raw reads for Jay Flatley genome Tom Clegg 02/16/2011 02:28 PM

476 GET-Evidence Feature New Low allow “lab members” group to upload/view publication PDFs Tom Clegg 02/16/2011 02:22 PM

504 GET-Evidence Bug New Low Import aachanges containing periods (eg. HGC6.3-N156S) Tom Clegg 02/15/2011 03:17 PM

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