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# Project Tracker Status Priority Subject Assigned To Updated % Done Hours
13338 Arvados Bug Resolved Normal [workbench] when running a workflow from workbench, it should create its containers in that project Peter Amstutz 07/23/2018 06:52 PM

13188 Arvados Bug Duplicate Normal [API] get rid of warning: Called 'load' without the safe option 09/12/2018 04:49 PM

12933 Arvados Bug Resolved Normal [crunch2] add equivalent of cloud_node line Tom Clegg 01/17/2018 04:17 PM

12834 Arvados Bug Closed Normal [Crunch2] Node record's crunch_worker_state field is not populated 07/07/2021 06:34 PM

12794 Arvados Bug Closed Normal [Node Manager] Behave smarter in environments where scratch space can be arbitrarily sized, like GCP and AWS 11/04/2020 05:00 PM

12791 Arvados Bug New Normal [API] fix race between arrival of trash time and next sweep 07/06/2021 09:11 PM

12762 Arvados Bug Resolved Normal [API] fix SafeYAML warning Lucas Di Pentima 11/13/2018 09:02 PM

12660 Arvados Bug Resolved Normal cwl-conformance-tests jenkins job hangs on composer Peter Amstutz 11/28/2017 07:59 PM

12347 Arvados Bug Resolved Normal [CWL] reuse hints appear to be broken Tom Clegg 09/30/2017 12:09 AM

12316 Arvados Bug Resolved Normal [Workbench] deletion of data collections destroying the provenance graph - rendering crashes Ward Vandewege 09/27/2017 06:35 PM

12122 Arvados Bug Resolved Normal workbench shouldn't error out when config files are missing if RAILS_GROUP includes 'assets' Ward Vandewege 08/16/2017 08:15 PM

11844 Arvados Bug Closed Normal [Workbench] incorrect text about log messages on empty collection 12/31/2019 08:48 PM

11548 Arvados Bug New Normal workbench needs to handle API server timeouts better 07/06/2021 09:23 PM

11170 Arvados Bug Resolved Normal Stale squeue processes on c97qk caused by "crunch-dispatch --jobs" Lucas Di Pentima 03/23/2017 02:29 PM

11156 Arvados Bug Resolved Normal [Crunch2] 9tee4-xvhdp-0m3a4ys52od7dhs was stuck until c-d-s was restarted Tom Clegg 02/24/2017 09:54 PM

11152 Tapestry Bug New Normal "There are 4 third party activities currently seeking participants." - but there are 5 02/22/2017 05:40 PM

11071 Arvados Bug Resolved Normal [Workbench] qr1hi performance tests are broken Radhika Chippada 03/20/2017 01:31 PM

11070 Arvados Bug Resolved Normal [arvados-ws] job logs are not being updated in real time Tom Clegg 02/15/2017 05:08 PM

11068 Arvados Bug Resolved Normal [Arvados-CWL-runner] need better error message when there are issues getting the docker image Peter Amstutz 09/26/2017 02:06 AM

11027 Arvados Bug New Normal [Crunchv2] python thread error after job success 07/07/2021 05:26 PM

10844 Arvados Bug Resolved Normal [API] arv-keepdocker fails with undefined method trash_at_changed? 01/09/2017 03:49 PM

10808 Arvados Bug Resolved Normal [Crunch] stuck job and pipeline instances on c97qk Ward Vandewege 01/18/2017 02:07 AM

10565 Arvados Bug Resolved Normal [arvbox] build is broken Peter Amstutz 11/29/2016 08:42 PM

10520 Arvados Bug Resolved Normal [CrunchV2] arvados-cwl-runner unhandled error when using --create-template 12/14/2016 08:34 PM

10519 Arvados Bug Resolved Normal [Workbench] fiddlesticks viewing container request 9tee4-xvhdp-q4bgh7mxr0bikop Peter Amstutz 12/06/2016 03:04 PM

10468 Arvados Bug Resolved Normal [Keepstore] configurable timeout on blob storage requests Tom Clegg 11/08/2016 02:03 PM

10467 Arvados Bug Resolved Normal [Keepstore] abandon work when client hangs up Tom Clegg 01/04/2017 05:46 PM

10408 Arvados Bug New Normal 4xphq keep balance api request causes oom on api server 07/07/2021 06:22 PM

10349 Arvados Bug Resolved Normal [DOC] add cookbook section with code snippets Peter Amstutz 09/13/2017 08:00 PM

9672 Tapestry Bug New Normal Install extension to allow password reset on RT 07/27/2016 04:54 PM

9214 Arvados Bug Closed Normal no node being spun up for pending job (after docker load failed) 01/21/2020 06:21 PM

8953 Arvados Bug Resolved Normal [Node manager] can not shut down nodes anymore Brett Smith 04/15/2016 09:51 PM

8952 Arvados Bug Resolved Normal [Node manager] TypeError: execv() arg 2 must contain only strings Brett Smith 03/15/2017 10:27 PM

8872 Arvados Bug Resolved Normal [Node Manager] On node creation, node search fails, and unhandled exceptions cascade up to the Daemon Actor Brett Smith 04/08/2016 02:05 AM

8871 Arvados Bug Closed Normal [Node Manager] Doesn't kill itself when unhandled exceptions are raised during actor setup 11/04/2020 05:12 PM

8828 Arvados Bug Resolved Normal [Crunch] be more resilient when crunchrunner is not available; also don't test for crunchrunner on api server Peter Amstutz 04/01/2016 06:25 PM

8825 Arvados Bug Resolved Normal [Keepstore] many connections in CLOSE_WAIT 03/15/2017 10:54 PM

8761 Arvados Bug Resolved Normal [Nodemanager] unexpected keyword argument ex_fetch_nic 03/29/2016 12:59 PM

8691 Arvados Bug Resolved Normal [Nodemanager] NodeManagerDaemonActor dies. Peter Amstutz 03/17/2016 03:33 PM

8621 Arvados Bug New Normal [Wiki] Clean up Computation_and_Pipeline_Processing page 07/07/2021 06:25 PM

8416 Arvados Bug Resolved Normal [Node Manager] General compute node driver calls self.find_node - Unimplemented in the EC2 driver Peter Amstutz 02/29/2016 03:46 PM

8218 Arvados Bug Duplicate Normal [Node Manager] race between node syncing and shutdown actors 01/20/2016 06:26 PM

8183 Arvados Bug Resolved Normal [Workbench] should not look up every group/project a user has access to on every page load Radhika Chippada 02/16/2016 02:34 AM

7870 Arvados Bug Resolved Normal [Crunch] crunch-dispatch fails to mark a job failed when its retry loop aborts Brett Smith 12/01/2015 09:33 PM

7833 Arvados Bug Closed Normal [Node Manager] spins up too many nodes 01/15/2020 09:01 PM

7826 Tapestry Bug New Normal Make sure that datasets which are served from Keep via get-evidence have collections 02/07/2016 08:10 PM

7725 Arvados Bug New Normal [Keep-store] make keep-store lookup token at runtime like keep-proxy does 07/07/2021 06:27 PM

7721 Arvados Bug Resolved Normal [Tests] Build 2170 ran for 2.5 hours until I cancelled it - deadlock in websockets tests 01/17/2017 07:18 PM

7714 Arvados Bug Closed Normal [Packaging] package naming needs to be consistent 01/15/2020 09:00 PM

7707 Arvados Bug Closed Normal Implement (semi-)automated OWASP scanning, ideally as part of the build process 01/15/2020 09:00 PM

7674 Tapestry Bug Resolved Normal disable releasing genomes as cagi option. Do not release the cagi genomes yet. Ward Vandewege 11/16/2015 10:01 PM

7673 Tapestry Bug New Normal OH integration token appears to time out after a while, user is presented with 'refresh token' 10/28/2015 04:18 PM

7465 Tapestry Bug Resolved Normal canceling link on OH integration redirects to https://my-dev.pgp-hms.org/auth/open-humans/callback?error=access_denied which throws a 500 10/28/2015 01:34 PM

7400 Arvados Bug New Normal [Workbench] node visibility as admin vs ordinary user does not line up 07/07/2021 06:28 PM

7389 Arvados Bug Closed Normal [Jenkins] Fix build-packages for ubuntu1204 Nico César 10/06/2015 06:45 PM

7385 Arvados Bug New Normal [Workbench] Pagination sets limit on last page, causing unintended side effects 07/07/2021 06:28 PM

7312 Arvados Bug New Normal [API] CSS+images missing on login_failure.html 07/07/2021 06:28 PM

7166 Arvados Bug New Normal [API] specifying an invalid filter should result in an error 07/07/2021 06:28 PM

6996 Arvados Bug Closed Normal [Node Manager] a node filled up its /tmp which killed slurm and docker, node unusable. Node manager did not kill the node. 11/04/2020 05:26 PM

6994 Arvados Bug Closed Normal [Deployment] our rails packages need to install certain files/directories as owned by $WWW_OWER 01/15/2020 08:05 PM

6991 Arvados Bug New Normal [Keep] multiple response.Writeheader calls 07/07/2021 06:28 PM

6914 Tapestry Bug Resolved Normal When resigning consents (new version), the twin/recontact radioboxes should be prepopulated based on the previous consent Ward Vandewege 08/06/2015 02:47 PM

6880 Arvados Bug Resolved Normal [Workbench] Remove delete functionality from Users table Radhika Chippada 08/06/2015 07:55 PM

6635 Arvados Bug New Normal [Documentation] document installation of node manager 07/07/2021 06:29 PM

6610 Arvados Bug Resolved Normal [API] [Webshell] shell accounts should be created even if the user has not added an SSH key Tom Clegg 07/15/2015 09:09 PM

6483 Arvados Bug Resolved Normal [Workbench] Additional shell groups are not added to original Link object 07/28/2015 05:01 PM

6305 Arvados Bug Duplicate Normal [SDK] arv keep docker argument parsing is too sensitive/wrong 06/11/2015 02:57 PM

6234 Arvados Bug Resolved Normal [Workbench] Admins should be able to edit their own user records, and view other users' home projects" from title Radhika Chippada 06/26/2015 03:00 PM

6221 Arvados Bug Resolved Normal [Data Manager] implement Delete Peter Amstutz 08/03/2015 04:46 PM

6098 Arvados Bug Resolved Normal [API] slow search? SQL query Tom Clegg 06/11/2015 01:43 PM

6076 Arvados Bug New Normal [API] walk api server installations and ensure modified_at for collections is unique + ensure modified_at is enforced to be unique at the api level. 07/07/2021 06:29 PM

6074 Arvados Bug Resolved Normal [API] collections are being returned too slowly + NoMemoryError Tom Clegg 06/04/2015 09:14 PM

6020 Arvados Bug New Normal [Workbench] The collection information box values for content address and content size should be updated automatically after new file(s) are added via browser upload. 07/07/2021 06:29 PM

5989 Arvados Bug Resolved Normal [API] API server repositories permissions list doesn't list repositories without keys Brett Smith 07/07/2015 09:23 PM

5988 Arvados Bug Resolved Normal [API] can not create arvados repository 05/15/2015 03:12 AM

5834 Arvados Bug Resolved Normal [API] Be careful about memory usage when responding to collections#index queries Brett Smith 05/02/2015 12:17 AM

5748 Arvados Bug Resolved Normal [Keep] sometimes, Keep sucks up 100% cpu and becomes really slow after a while Tom Clegg 05/20/2015 07:08 PM

5742 Arvados Bug Resolved Normal [Workbench] the user setup page creates broken shell usernames Brett Smith 04/16/2015 06:12 PM

5683 Tapestry Bug New Normal Trait surveys incomplete listed on a lot of entries in the WGS data page. Sounds like a bug. 04/08/2015 04:37 PM

5536 Arvados Bug Resolved Normal [Keepproxy] keepproxy should retry on DiscoverKeepServers() failure or empty list Peter Amstutz 03/24/2015 02:02 PM

5528 Tapestry Bug Resolved Normal The safety questionnaire isn't redirecting people to the page they were planning to go to 08/05/2015 09:28 PM

5304 Arvados Bug Resolved Normal [API] filters incorrectly exclude results for records with null value in filtered field Radhika Chippada 03/11/2015 04:52 PM

5267 Arvados Bug Resolved Normal [Node Manager] add one integration test for node manager Tom Morris 02/13/2019 06:04 PM

5220 Arvados Bug Resolved Normal [Workbench] for collections shared anonymously, do not show the 'Sharing and Permissions' box Radhika Chippada 02/17/2015 03:30 PM

5200 Arvados Bug Resolved Normal [Workbench] on public project, collection downloads require login Tom Clegg 02/16/2015 05:32 PM

5186 Arvados Bug Resolved Normal [Workbench] Collection viewing broken for collections with empty (but non-nil) properties attribute Radhika Chippada 02/16/2015 02:00 PM

5185 Arvados Bug Resolved Normal [Workbench] Project lists all collections as zero size as of 6bf9ae1 Radhika Chippada 02/12/2015 03:02 AM

5026 Arvados Bug Closed Normal [API] Prohibit leaving jobs in an inconsistent state (e.g., state=queued with non-null log or output) 12/31/2019 08:31 PM

4958 Arvados Bug Resolved Normal [Workbench] Show an alert message below top nav when running in an unsupported browser. Tom Clegg 02/11/2015 12:59 AM

4957 Arvados Bug New Normal [SDKs] arv keep put blows up when trying to put a danging symlink 07/07/2021 06:31 PM

4891 Arvados Bug Closed Normal [Node Manager] Should not associate node with incorrect arvados node object 01/05/2015 02:00 PM

4887 Arvados Bug Resolved Normal [API] Make sure the local dns records for old compute nodes are updated if there's a conflict with a new compute node Ward Vandewege 12/31/2014 08:02 PM

4780 Arvados Bug Resolved Normal [Support] Fix bugs and write tests (week 4) Tim Pierce 01/07/2015 05:27 PM

4779 Arvados Bug Resolved Normal [Support] Fix bugs and write tests (week 3) Tim Pierce 01/05/2015 02:44 PM

4770 Arvados Bug New Normal [Workbench] after file upload, the files tab should refresh immediately (overriding the 15 second throttle) 07/07/2021 06:31 PM

4767 Arvados Bug New Normal [API] Discovery doc should fix its incorrect "list" method description to be identical to "index" 07/07/2021 06:31 PM

4536 Arvados Bug Resolved Normal [SDKs] arv tag is broken 10/02/2015 01:12 PM

4507 Arvados Bug Duplicate Normal [SDKs] arv ws should exit on ctrl-c 08/14/2015 06:57 PM

4474 Arvados Bug Resolved Normal [Node Manager] Node manager shut down node in middle of job 11/14/2014 09:11 PM

4461 Arvados Bug Resolved Normal [OPS] Replace dnsmasq with unbound Ward Vandewege 11/20/2014 03:12 PM

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