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10838 Arvados Bug Resolved Immediate [Workbench] "#<NoMethodError: undefined method `output_name' for #<ContainerRequest:0x0000000557ac60>>" Ward Vandewege 01/09/2017 03:43 PM

14560 Arvados Bug Resolved Urgent [1.3.0] error: ERROR: string is too long for tsvector (2299194 bytes, max 1048575 bytes) Tom Clegg 02/21/2019 05:44 PM

4133 Arvados Support Resolved High [Support] fix bugs and write tests (first half) Brett Smith 10/20/2014 01:41 PM

4134 Arvados Support Resolved High [Support] fix bugs and write tests (second half) Radhika Chippada 10/30/2014 12:47 PM

15428 Arvados Bug Resolved Normal [doc] our documentation still refers to outdated config.yml parameters 12/18/2019 09:36 PM

4401 Arvados Bug Resolved Normal [Docker] Check dependencies at top of build.sh Ward Vandewege 03/09/2017 09:51 PM

3825 Arvados Bug Resolved Normal [Crunch] crunch-job should save (very) large log files without filling up tmp space Tim Pierce 10/08/2014 07:19 PM

17281 Arvados Bug Resolved Normal [Documentation] Check in missing file Peter Amstutz 02/22/2021 04:05 PM

4049 Arvados Bug Resolved Normal [Crunch] typo in one of the names of a job for qr1hi-d1hrv-ze9iyb3ckerqasw causes last job to wait forever for an input. High server load ensues. 10/03/2014 07:21 PM

10519 Arvados Bug Resolved Normal [Workbench] fiddlesticks viewing container request 9tee4-xvhdp-q4bgh7mxr0bikop Peter Amstutz 12/06/2016 03:04 PM

17764 Arvados Bug New Normal [arv-put] progress update does not refresh frequently enough 07/06/2021 09:08 PM

17012 Arvados Bug Resolved Normal [versioning] generate correct development version numbers for all packages after a major release Ward Vandewege 05/13/2021 03:03 PM

8218 Arvados Bug Duplicate Normal [Node Manager] race between node syncing and shutdown actors 01/20/2016 06:26 PM

8872 Arvados Bug Resolved Normal [Node Manager] On node creation, node search fails, and unhandled exceptions cascade up to the Daemon Actor Brett Smith 04/08/2016 02:05 AM

11170 Arvados Bug Resolved Normal Stale squeue processes on c97qk caused by "crunch-dispatch --jobs" Lucas Di Pentima 03/23/2017 02:29 PM

3819 Arvados Bug Resolved Normal [Workbench] It's not possible to share a project with the 'All Users' group Ward Vandewege 02/24/2015 10:07 PM

10468 Arvados Bug Resolved Normal [Keepstore] configurable timeout on blob storage requests Tom Clegg 11/08/2016 02:03 PM

4461 Arvados Bug Resolved Normal [OPS] Replace dnsmasq with unbound Ward Vandewege 11/20/2014 03:12 PM

16833 Arvados Bug Resolved Normal [build] replace python-epydoc in our build environment Ward Vandewege 10/07/2020 02:12 AM

17526 Arvados Bug Resolved Normal [workbench2] UX improvements for collections 3rd party access information Stephen Smith 08/25/2021 09:04 PM

12834 Arvados Bug Closed Normal [Crunch2] Node record's crunch_worker_state field is not populated 07/07/2021 06:34 PM

18009 Arvados Bug New Normal [controller] always returns an empty "unsigned_manifest_text" field for collections 08/11/2021 05:15 PM

2935 Arvados Bug Rejected Normal Make sure that logs listener can not be overwhelmed by herd of (misbehaving) jobs 06/06/2014 12:35 PM

4044 Arvados Bug Resolved Normal [Crunch] job spawns tasks but never runs them, gets stuck waiting for first task to end, even though it has already ended. Tom Clegg 10/30/2014 05:11 PM

18393 Arvados Bug New Normal [workbench2] forces relogin on every new window/tab 11/19/2021 02:43 PM

5748 Arvados Bug Resolved Normal [Keep] sometimes, Keep sucks up 100% cpu and becomes really slow after a while Tom Clegg 05/20/2015 07:08 PM

18989 Arvados Bug Closed Normal [controller] TLS/insecure config value should be in exported config 04/12/2022 07:45 PM

17333 Arvados Bug Resolved Normal arvados-cwl-runner does not validate that project-uuid is valid, and returns confusing error message if not Peter Amstutz 07/07/2021 09:17 PM

3769 Arvados Bug Resolved Normal [API] In crunch-dispatch, throttle by bytes_per_minute or _node_minute Peter Amstutz 10/03/2014 12:14 AM

12794 Arvados Bug Closed Normal [Node Manager] Behave smarter in environments where scratch space can be arbitrarily sized, like GCP and AWS 11/04/2020 05:00 PM

8416 Arvados Bug Resolved Normal [Node Manager] General compute node driver calls self.find_node - Unimplemented in the EC2 driver Peter Amstutz 02/29/2016 03:46 PM

1024 GET-Evidence Bug Closed Normal fix copyright information in COPYING file Tom Clegg 07/25/2012 03:20 PM

4058 Arvados Bug Resolved Normal [Workbench] "Show portable data hash" page should show the kind of content that relates to PDH instead of trying to be a mostly-functional "show collection" page. Peter Amstutz 10/23/2014 06:05 PM

18590 Arvados Bug Resolved Normal [api] invalid value in discovery doc Ward Vandewege 03/24/2022 07:28 PM

17745 Arvados Bug New Normal [config] arvados-server config-dump with ec2 driver has confusing output 07/06/2021 09:08 PM

2447 Arvados Bug Resolved Normal Workbench search is broken - it always returns everything Tom Clegg 04/02/2014 12:56 PM

10565 Arvados Bug Resolved Normal [arvbox] build is broken Peter Amstutz 11/29/2016 08:42 PM

16482 Arvados Bug Resolved Normal [crunch] bump a-c-r's cwltool dependency to pass CWL v1.2.0-dev3 tests Ward Vandewege 08/04/2020 08:52 PM

17186 Arvados Bug New Normal [dispatch] broken node logs should also be copied to a-d-c logs 12/02/2020 05:49 PM

10349 Arvados Bug Resolved Normal [DOC] add cookbook section with code snippets Peter Amstutz 09/13/2017 08:00 PM

7465 Tapestry Bug Resolved Normal canceling link on OH integration redirects to https://my-dev.pgp-hms.org/auth/open-humans/callback?error=access_denied which throws a 500 10/28/2015 01:34 PM

4779 Arvados Bug Resolved Normal [Support] Fix bugs and write tests (week 3) Tim Pierce 01/05/2015 02:44 PM

17424 Arvados Bug New Normal [API] group contents endpoint edge cases with filter on uuid 03/08/2021 08:48 PM

16392 Arvados Bug Resolved Normal [keep] trailing slash in InternalURLs entry for keepstore causes problems with keepproxy Lucas Di Pentima 10/07/2020 02:14 AM

3890 Arvados Bug Resolved Normal [API] dots (and probably other valid characters) are being stripped from git repository names. The name field in the output of arv repository get_all_permissions is wrong (it strips characters that are valid) 09/24/2014 02:01 PM

8871 Arvados Bug Closed Normal [Node Manager] Doesn't kill itself when unhandled exceptions are raised during actor setup 11/04/2020 05:12 PM

4767 Arvados Bug New Normal [API] Discovery doc should fix its incorrect "list" method description to be identical to "index" 07/07/2021 06:31 PM

18983 Arvados Bug Resolved Normal [config-check] should warn when LocalKeepBlobBuffersPerVCPU will be ignored Tom Clegg 05/20/2022 04:41 PM

1835 Tapestry Bug Resolved Normal parameterize consent document url + consent approved badge url Ward Vandewege 01/05/2014 11:55 AM

7673 Tapestry Bug New Normal OH integration token appears to time out after a while, user is presented with 'refresh token' 10/28/2015 04:18 PM

18713 Arvados Bug Resolved Normal [gpu] nvidia-persistenced.service fails when booted on a node without GPUs Ward Vandewege 03/24/2022 07:28 PM

11152 Tapestry Bug New Normal "There are 4 third party activities currently seeking participants." - but there are 5 02/22/2017 05:40 PM

1518 Tapestry Bug Closed Normal hex prefix (hu, sk, etc) should be a configuration option instead of hardcoded in script/populate_next_hex.rb Ward Vandewege 09/23/2013 11:15 AM

6914 Tapestry Bug Resolved Normal When resigning consents (new version), the twin/recontact radioboxes should be prepopulated based on the previous consent Ward Vandewege 08/06/2015 02:47 PM

17192 Tapestry Bug Resolved Normal saving a shipping address is broken Ward Vandewege 12/03/2020 10:25 PM

5683 Tapestry Bug New Normal Trait surveys incomplete listed on a lot of entries in the WGS data page. Sounds like a bug. 04/08/2015 04:37 PM

1380 GET-Evidence Bug New Normal slowness when accessing /genomes as admin user Ward Vandewege 02/04/2013 02:36 PM

16927 Arvados Bug Resolved Normal [Workbench2] [login federation] snackbar error on page load: Getting current user for ce8i5.arvadosapi.com: Network Error Peter Amstutz 10/07/2020 02:47 AM

9672 Tapestry Bug New Normal Install extension to allow password reset on RT 07/27/2016 04:54 PM

7826 Tapestry Bug New Normal Make sure that datasets which are served from Keep via get-evidence have collections 02/07/2016 08:10 PM

4335 Arvados Bug Closed Normal [Crunch] Improve node startup speed. 15 min is too slow. Ward Vandewege 03/09/2017 09:51 PM

7674 Tapestry Bug Resolved Normal disable releasing genomes as cagi option. Do not release the cagi genomes yet. Ward Vandewege 11/16/2015 10:01 PM

18835 Arvados Bug Resolved Normal [a-c-r] name 'file' is not defined (Python 3) Peter Amstutz 04/26/2022 01:29 PM

2947 Tapestry Bug New Normal When a waitlisted user revisits the eligibility questionnaire and removes their obstacle for eligibility, they are not automatically removed from the waitlist. 06/02/2014 10:32 AM

18903 Arvados Bug Resolved Normal [user activity script] does not always initialize user object and other fixes Ward Vandewege 04/01/2022 01:18 PM

16308 Tapestry Bug Resolved Normal updating a user's information as an admin (at /admin/users/XXXX/edit) results in 500 if they are subscribed to a mailing list Ward Vandewege 04/02/2020 01:43 AM

5186 Arvados Bug Resolved Normal [Workbench] Collection viewing broken for collections with empty (but non-nil) properties attribute Radhika Chippada 02/16/2015 02:00 PM

4891 Arvados Bug Closed Normal [Node Manager] Should not associate node with incorrect arvados node object 01/05/2015 02:00 PM

15716 Arvados Bug Resolved Normal [api] deleting all keep_service records results in 422 error on subsequent request for keep_service list Lucas Di Pentima 01/21/2020 09:26 PM

5528 Tapestry Bug Resolved Normal The safety questionnaire isn't redirecting people to the page they were planning to go to 08/05/2015 09:28 PM

1836 Tapestry Bug New Normal when Tapestry fails to send e-mail, user should not be presented with an "sorry, something went wrong" message Ward Vandewege 01/05/2014 09:35 AM

17702 Arvados Bug Resolved Normal [workbench1] fiddlesticks on home page, cannot execute federated list query with limit (9223372036854775807) < nUUIDs (2), offset (1) > 0, or order ([]) parameter [API: 400] Peter Amstutz 11/16/2021 04:48 PM

18385 Arvados Bug New Normal arvados-server config-dump | arvados-server config-check -config=- spurious warnings 11/16/2021 09:06 PM

5220 Arvados Bug Resolved Normal [Workbench] for collections shared anonymously, do not show the 'Sharing and Permissions' box Radhika Chippada 02/17/2015 03:30 PM

3141 Arvados Bug Resolved Normal Keep logging improvements Ward Vandewege 07/07/2014 12:53 PM

19126 Arvados Bug Resolved Normal Disable nginx proxy caching for controller Ward Vandewege 05/16/2022 03:36 PM

19127 Arvados Bug Resolved Normal spurious config warnings when using local keepstore on compute Ward Vandewege 05/16/2022 03:36 PM

7833 Arvados Bug Closed Normal [Node Manager] spins up too many nodes 01/15/2020 09:01 PM

1520 Tapestry Bug New Normal auto-enrollment feature should be configurable Ward Vandewege 09/20/2013 01:33 PM

19054 Arvados Bug Resolved Normal [documentation] clarify AWS credentials needed for local keepstore on compute Ward Vandewege 04/25/2022 09:00 PM

1519 Tapestry Bug Resolved Normal after promoting a user in the admin interface, tapestry should not redirect to the user detail page Ward Vandewege 09/23/2013 10:39 AM

18976 Arvados Bug Resolved Normal [c-d-l] depends on arv-mount Ward Vandewege 04/13/2022 03:29 PM

17738 Arvados Bug Resolved Normal [ruby] sudden gem load errors on ubuntu 18.04 (ruby 2.5.1) Ward Vandewege 06/02/2021 09:33 PM

16931 Arvados Bug New Normal [login federation] Not Found modal when looking at trashed collection 09/30/2020 04:39 PM

18264 Arvados Bug Resolved Normal [CI] simplify the way we run the CWL tests Ward Vandewege 03/24/2022 07:28 PM

17952 Arvados Bug Resolved Normal [workbench] Remove unused "compute nodes" UX (admin dropdown) Peter Amstutz 08/06/2021 01:16 PM

17937 Arvados Bug New Normal [workbench] uploader is hardcoded to X-Keep-Desired-Replicas: 2 08/13/2021 04:40 AM

1209 GET-Evidence Bug New Normal slowness accessing http://evidence.personalgenomes.org/hu43860C Ward Vandewege 11/07/2012 10:56 AM

9214 Arvados Bug Closed Normal no node being spun up for pending job (after docker load failed) 01/21/2020 06:21 PM

3203 Arvados Bug Resolved Normal fix tutorials wrt new workbench Radhika Chippada 07/16/2014 03:44 PM

2545 Tapestry Bug New Normal broken links on /admin/removal_requests 04/07/2014 01:29 PM

18862 Arvados Bug New Normal [api] remove replay_job_log rake task 03/14/2022 03:43 PM

18000 Arvados Bug New Normal [deduplicationreport] negative number in the "saved by Keep deduplication" report 08/10/2021 01:27 PM

17219 Arvados Bug Resolved Normal refactor scripts that move old packages to attic repos Ward Vandewege 01/28/2021 03:16 PM

1023 GET-Evidence Bug Closed Normal http://evidence.personalgenomes.org/guide_impact_scores is 404 Tom Clegg 07/25/2012 10:14 AM

17171 Arvados Bug Resolved Normal [sdk] unreasonable python SDK timeout when ARVADOS_API_HOST is reachable Lucas Di Pentima 11/16/2021 04:47 PM

18130 Arvados Bug Resolved Normal Release Arvados 2.3.0 Peter Amstutz 10/27/2021 07:59 PM

19011 Arvados Bug Resolved Normal [api/wb1] nokogiri bump Ward Vandewege 04/14/2022 03:23 PM

11071 Arvados Bug Resolved Normal [Workbench] qr1hi performance tests are broken Radhika Chippada 03/20/2017 01:31 PM

19057 Arvados Bug New Normal [controller] should not allow adding the same user to a VM more than one time 05/06/2022 03:25 PM

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