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# Project Tracker Status Priority Subject Assigned To Updated % Done Hours
15457 Arvados Feature New Normal [Controller] Delegate new container requests to other clusters based on location of input data 07/06/2021 09:12 PM

15448 Arvados Workbench 2 Feature New Normal [Running a workflow] Specify destination project for intermediate/output collections 07/10/2019 06:26 PM

15125 Arvados Feature New Normal [keep-balance] [keepstore] Procedure to halt/reverse/investigate a suspected data loss incident 07/06/2021 09:09 PM

15082 Arvados Feature New Normal [controller] [all services] Publish entire config including secrets 07/06/2021 09:09 PM

15025 Arvados Feature New Normal [arvados-dispatch-cloud] GCE driver (Google Compute Engine) 07/06/2021 09:09 PM

14922 Arvados Feature New Normal [crunch-dispatch-cloud] Run multiple containers concurrently on a single VM 07/06/2021 09:13 PM

14021 Arvados Feature New Normal [crunch-dispatch-slurm] option to set job priority directly instead of using nice values 07/06/2021 09:09 PM

13688 Arvados Feature New Normal [API] optional asynchronous flag for create/update operations 04/22/2020 09:08 PM

13272 Arvados Feature New Normal [keep-web] read/write support for /by_id and /users 07/06/2021 09:14 PM

12996 Arvados Feature New Normal [SDKs] CollectionFS should repack highly fragmented files 01/24/2018 08:33 PM

12692 Arvados Feature New Normal [keep-web] Accept /t=token/c=collection/path (currently only /c=collection/t=token/path) 07/06/2021 09:11 PM

11668 Arvados Feature New Normal [SDKs] Exceptions raised by Python SDK should include the "error token" if provided in the API response 07/06/2021 09:22 PM

11582 Arvados Feature New Normal [API] Delete old job/container logs in main server process, instead of rake tasks invoked from cron jobs 07/06/2021 09:22 PM

11153 Arvados Feature New Normal [API] create_token script should allow operator to provide token scopes and opaque comment 07/07/2021 05:25 PM

11146 Arvados Feature New Normal [Crunch2] [Workbench] Show slurm queue position of containers submitted to slurm but not yet running 07/07/2021 05:25 PM

10594 Arvados Feature New Normal [API] [Workbench] Error out when unrecognized keys appear in config files 07/07/2021 06:21 PM

10541 Arvados Feature New Normal [Keep] Share buffers between overlapping/consecutive GET requests for the same block 07/07/2021 06:22 PM

9968 Arvados Feature New Normal [Crunch2] [API] Support container request expiry (expires_at) 07/07/2021 06:23 PM

9364 Arvados Feature New Normal [keep-balance] "Expedited delete" tool: perform garbage collection on some specific (recently deleted) collections, bypassing usual GC race protections 07/07/2021 06:25 PM

9027 Tapestry Feature New Normal Incorporate coverage info from get-evidence dataset_reports in publication statistics 04/20/2016 08:20 PM

8754 Arvados Feature New Normal [Tests] Add code-checking tools to CI test pipeline 01/18/2020 01:09 AM

8698 Tapestry Feature New Normal When UserFile data is updated, if it has a suitable data type, submit report-generator jobs 03/18/2016 12:32 AM

8228 Arvados Feature New Normal [SDKs] [FUSE] Python SDK and arv-mount use Range requests when a caller requests part of a block that has been ejected from the cache 07/07/2021 06:27 PM

8213 Arvados Feature New Normal [SDKs] arv get (and edit) should support a flag that suppresses display of non-writable attributes like "status" and "writable_by" 07/07/2021 06:27 PM

8212 Arvados Feature New Normal [SDKs] arv CLI program accepts "-" and "/path/to/file" as values for parameters that expect JSON (most notably the "body" parameter) 07/07/2021 06:27 PM

8163 Arvados Feature New Normal [FUSE] arv-mount should detect and log any files/dirs that are still open after unmounting 07/07/2021 06:27 PM

8064 Arvados Feature New Normal [Keep-web] Support CORS requests with Authorization headers 07/06/2021 09:12 PM

7694 Arvados Feature New Normal [API] [Workbench] Check for nonexistent config params during rake config:check 07/07/2021 06:27 PM

7024 Arvados Feature New Normal [Keep] keepstore status.json should report runtime environment 07/07/2021 06:28 PM

6782 Arvados Feature New Normal [API] [Workbench] Generate debconf template from config yaml 07/07/2021 06:29 PM

6574 Arvados Feature New Normal [Workbench] [Webshell] Rough edges in web shell 07/07/2021 06:29 PM

6442 Arvados Feature New Normal [Workbench] [API] Support "world-readable, but not world-searchable" permission on projects: "anyone with the link can view" 07/07/2021 06:29 PM

6348 Arvados Feature New Normal [Deployment] [Documentation] Minimize system-wide dependencies for compute node setup 07/07/2021 06:29 PM

5962 Arvados Feature New Normal [Keep] Use bufferpool in keepproxy to limit memory use when there are many concurrent PUTs 07/07/2021 06:29 PM

5840 Arvados Feature New Normal [API] Relax repository name constraints to permit [-_.] -- ideally allow anything github allows 07/07/2021 06:30 PM

5782 Arvados Feature New Normal [Workbench] Support entering boolean script_parameters when editing a pipeline instance 07/07/2021 06:30 PM

5768 Arvados Feature New Normal [Node Manager] Add max_node_per_user config 05/05/2015 06:34 PM

5767 Arvados Feature New Normal [API] Websockets subscribe API should accept a start timestamp, so clients don't have to miss any events logged between the given start time and websocket connection success. 07/07/2021 06:30 PM

5582 Arvados Feature New Normal [API] [Workbench] Add read-only ("locked") flag to projects 07/07/2021 06:30 PM

5439 Arvados Feature New Normal [Tests] Provide a docker image, based on puppet/packer process, that can run the entire test suite quickly. 07/07/2021 06:30 PM

5415 Arvados Feature New Normal [Workbench] Improve presentation of anonymously-viewed collections (via both "sharing link" and regular copy-and-pasted Location) Tom Morris 07/07/2021 06:30 PM

5382 Arvados Feature New Normal [Documentation] arvados VM simulator, demonstrating how it looks to use Arvados from CLI 07/07/2021 06:30 PM

5260 Arvados Feature New Normal [Tests] Implement long-running keepstore services in run-tests, similar to what api got in #3021 07/07/2021 06:30 PM

5259 Arvados Feature New Normal [Tests] Reduce dependency on integration tests 07/07/2021 06:30 PM

5201 Arvados Feature New Normal [SDKs] arv-put --description X --properties P should set respective attrs on new collection. 07/07/2021 06:30 PM

5193 Arvados Feature New Normal [Workbench] Public project page should encourage visitors to try using Arvados themselves 07/07/2021 06:30 PM

5133 Arvados Feature New Normal [Crunch] Use uncommitted code in a git work tree to run a dockerized crunch job in a VM (using crunch-job or arv-run-pipeline-instance --run-jobs-here) 07/07/2021 06:30 PM

5035 Arvados Feature New Normal [Documentation] Document the minimum docker image / Dockerfile that can be used to run a job. 07/07/2021 06:30 PM

5033 Arvados Feature New Normal [SDKs] `arv keep docker` should pipe the data directly to Keep instead of store-and-forward, and provide some progress feedback up front in any case. 07/07/2021 06:30 PM

4650 Arvados Feature New Normal [API] API method and CLI shortcut for refreshing the signatures on some block locators (without creating a collection) 07/07/2021 06:35 PM

4531 Arvados Feature New Normal [Documentation] Set of introductory tutorials each focused on accomplishing a simple task 07/07/2021 06:35 PM

4503 Arvados Feature New Normal [SDKs] Option to watch logs (instead of exiting) when queuing a job or pipeline instance using arv job create, arv pipeline run, etc. 07/07/2021 06:35 PM

4502 Arvados Feature New Normal [SDKs] "arv recent [objectType]" lists recently modified objects 07/07/2021 06:35 PM

3964 Arvados Feature New Normal [SDKs] Command-line diagnostic suite reveals problems on a shell VM (e.g., arv-mount, SDK version skew) 07/07/2021 06:36 PM

3892 Arvados Feature New Normal [SDKs] Install man pages for CLI tools (auto generate from the --help content) 07/07/2021 06:36 PM

3223 Arvados Feature New Normal [Documentation] Tutorial for adding a crunch script wrapper for an existing tool that is already hosted on github. 07/07/2021 06:36 PM

2706 Arvados Feature New Normal [SDKs] Python SDK Keep client can enable "HEAD before PUT" mode when writing. Expose this as an arv-put option. 11/01/2015 01:32 AM

1427 Tapestry Feature New Normal As an administrator, I can see the (not-actually-public) public profile page of a suspended participant / participant who withdrew and requested data removal 10/28/2013 04:36 PM

714 GET-Evidence Feature New Normal Add spam-control measures 09/22/2011 06:59 PM

696 GET-Evidence Feature New Normal Add Google Search API 09/15/2011 01:53 PM

519 GET-Evidence Feature New Normal Use "BED" / "BED Detail" format instead of GFF Tom Clegg 02/16/2011 02:53 PM

517 GET-Evidence Feature New Normal Genome links should indicate which data set(s) actually support the variant call Tom Clegg 02/15/2011 03:17 PM

501 GET-Evidence Feature New Normal GWAS - mark existing "not reviewed" variants as "pathogenic" Tom Clegg 02/16/2011 02:55 PM

498 GET-Evidence Feature New Normal Show nucleotide positions for all dbSNP-keyed variants Tom Clegg 02/16/2011 02:56 PM

488 GET-Evidence Feature New Normal Allow non-nsSNP variants Tom Clegg 02/16/2011 02:56 PM

486 GET-Evidence Feature New Normal support publications without PMIDs (other namespaces? original contributions? OWW?) Tom Clegg 02/16/2011 02:56 PM

485 GET-Evidence Feature New Normal Don't let users add variant pages for genes that aren't in knownGene Tom Clegg 02/16/2011 02:32 PM

484 GET-Evidence Feature New Normal Figure out better solution to HNF1A-Ser574Gly (genomes) vs. HNF1A-Gly574Ser (omim) Tom Clegg 02/16/2011 02:56 PM

483 GET-Evidence Feature New Normal Handle/prevent edit conflicts more effectively Tom Clegg 02/16/2011 02:56 PM

482 GET-Evidence Feature New Normal add “affects self (hom or dominant)” checkbox (vs “affects offspring”) on result page Tom Clegg 02/16/2011 02:57 PM

481 GET-Evidence Feature New Normal Test Internet Explorer, possibly use Chrome Frame to make editing features work in IE Tom Clegg 02/16/2011 02:57 PM

476 GET-Evidence Feature New Low allow “lab members” group to upload/view publication PDFs Tom Clegg 02/16/2011 02:22 PM

16607 Arvados Task New Normal Review Ward Vandewege 10/14/2020 07:52 PM

16546 Arvados Task New Normal Review Tom Clegg 07/06/2021 09:11 PM

15505 Arvados Task New Normal Review Tom Clegg 07/06/2021 09:12 PM

10073 Arvados Task New Normal Transition plan Tom Clegg 07/07/2021 06:23 PM

10066 Arvados Task New Normal Review 07/07/2021 06:23 PM

10046 Arvados Task New Normal rails systemd unit or nginx config Tom Clegg 07/07/2021 06:23 PM

9158 Arvados Task New Normal Skip expensive setup/teardown, too Tom Clegg 07/07/2021 06:25 PM

9026 Tapestry Task New Normal Retrieve coverage metadata from get-evidence jobs Tom Clegg 04/20/2016 08:19 PM

8796 Tapestry Task New Normal Poll arvados for finished pipelines, resolve/reject relevant ArvadosJob Tom Clegg 03/24/2016 06:48 PM

8794 Tapestry Task New Normal Notify user that transfer has been initiated Tom Clegg 03/24/2016 06:47 PM

6925 Tapestry Task New Normal Review 6924-survey-field-id Ward Vandewege 08/06/2015 05:26 PM

6612 Arvados Task New Normal Report trash and pull queue & worker status in keepstore /status.json 01/18/2017 07:10 AM

6127 Arvados Task New Normal Preserve template goal through login->UA->profile->back-to-work process, and then convert template to instance goal Tom Clegg 07/07/2021 06:29 PM

6126 Arvados Task New Normal Decide URL and advice for appropriate next step when in "pipeline goal" mode Tom Clegg 07/07/2021 06:29 PM

6125 Arvados Task New Normal Enter goal mode when hitting Run on a pipeline template Tom Clegg 07/07/2021 06:29 PM

6124 Arvados Task New Normal Add "goal mode" infrastructure Tom Clegg 07/07/2021 06:29 PM

6109 Arvados Task New Normal Review 07/07/2021 06:29 PM

5938 Arvados Task New Normal Handle normal container startup and shutdown races without logging an error/notice or missing the first interval Tom Clegg 07/07/2021 06:30 PM

5862 Arvados Task New Normal Fill in component params from pipeline params in a-r-p-i Tom Clegg 02/14/2017 08:00 PM

5861 Arvados Task New Normal Allow editing pipeline parameters in workbench Tom Clegg 02/14/2017 08:00 PM

5860 Arvados Task New Normal Provide detail about expected information/presentation Tom Clegg 07/06/2021 09:26 PM

5853 Arvados Task New Normal Document pipeline parameters API Tom Clegg 02/14/2017 08:00 PM

5454 Arvados Task New Normal Prototype keep-to-s3 gateway Tom Clegg 02/13/2019 06:04 PM

4611 Arvados Task New Normal Update doc to match current plans Tom Clegg 03/09/2017 09:54 PM

3738 Arvados Task New Normal arv-run-pipeline-instance: display workbench URI instead of the bare uuid 07/06/2021 09:27 PM

3737 Arvados Task New Normal Include workbench URI in discovery document 07/06/2021 09:27 PM

3309 Arvados Task New Normal [Documentation] Present an efficient pattern for developing a Python program as a Crunch job 03/10/2017 06:40 PM

3192 Arvados Task New Normal Clarify requirements/implementation Tom Clegg 03/09/2017 09:35 PM

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