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# Project Tracker Status Priority Subject Assigned To Updated % Done Hours
14085 Lightning Story Closed Normal [CWL] Create VCF + BED to gVCF pipeline Abram Connelly 08/21/2018 01:07 PM

13915 Lightning Task Closed Normal Review #13756, branch 13756-test-10-harvard-pgp-gff-to-cgf Sarah Zaranek 08/06/2018 03:09 PM

13756 Lightning Story Closed Normal Convert 10 Harvard PGP GFF to CGF [CWL] Abram Connelly 08/06/2018 03:43 PM

13686 Lightning Task Closed Normal Common Workflow Language (CWL) CGF check Abram Connelly 07/09/2018 02:27 PM

13671 Lightning Task Closed Normal FastJ and SGLF to CGF CWL pipeline Abram Connelly 06/26/2018 06:16 AM

13670 Lightning Task Closed Normal Create CWL SGLF tile library pipeline for creation and merging tile libraries Abram Connelly 06/21/2018 08:41 AM

13639 Lightning Story New Normal Imputation and phasing flag in CGF data 04/30/2019 05:31 PM

13614 Lightning Task Closed Normal Review branch of 13506 06/15/2018 09:51 PM

13506 Lightning Story Closed Normal Update Genotype conversion tool Abram Connelly 06/15/2018 09:51 PM

13498 Lightning Task Resolved Normal Review #13380, CWL FastJ check Sarah Zaranek 05/23/2018 04:49 PM

13485 Lightning Task Resolved Normal Review #13452 and #12245 Jiayong Li 05/18/2018 04:03 PM

13470 Lightning Task Closed Normal review #13425 Jiayong Li 05/21/2018 03:47 AM

13469 Lightning Bug Resolved Normal vcfbed2homref misreported homref region 05/10/2018 06:18 AM

13452 Lightning Bug Closed Normal pasta does not properly report "startTile" flag field when tilepath is only one tile long Abram Connelly 05/21/2018 04:05 AM

13425 Lightning Story Closed Normal Create CWL pipeline for VCF + BED file to gVCF conversion Abram Connelly 05/21/2018 03:47 AM

13424 Lightning Story Resolved Normal CWL documentation overview Abram Connelly 05/03/2018 09:35 PM

13378 Lightning Task Resolved Normal review #13336 Jiayong Li 04/26/2018 03:31 PM

13336 Lightning Story Resolved Normal Implement VCF with BED file conversion to FastJ Abram Connelly 04/26/2018 03:35 PM

13271 Lightning Task Closed Normal Code Review for 13247-check-cgf-gvcf-local-space-fix branch Abram Connelly 03/23/2018 04:07 PM

13256 Arvados Bug Closed Normal Weird directory structure for CommandLineTool CWL pipeline 03/03/2020 07:16 PM

13247 Lightning Bug Closed Normal Check CGF CWL takes up too much local disk space Abram Connelly 03/23/2018 04:07 PM

13234 Lightning Task Resolved Normal FastJ checks for FastJ files Keldin Sergheyev 04/24/2018 06:10 PM

13231 Lightning Task Closed Normal Code review Abram Connelly 03/15/2018 06:53 PM

13230 Lightning Story Closed Normal CWL tile assembly checks Abram Connelly 03/15/2018 06:53 PM

13229 Lightning Task Resolved Normal code review Abram Connelly 03/14/2018 10:52 PM

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