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# Project Tracker Status Priority Subject Assigned To % Done
  Normal 1774 Collapse all/Expand all
17274 Arvados Story New Normal Add "viewer.commonwl.org" DNS alias Peter Amstutz

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17073 Arvados Bug New Normal Permission links originating from users should only update that user Peter Amstutz

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16964 Arvados Task New Normal Review Peter Amstutz

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16879 Arvados Task New Normal Review Peter Amstutz

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16768 Arvados Task New Normal Review Peter Amstutz

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16673 Arvados Support New Normal Document using OpenID Connect support for AAI Peter Amstutz

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16537 Arvados Task New Normal Review Peter Amstutz

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16414 Arvados Task New Normal Review Peter Amstutz

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16355 Arvados Task New Normal Review Peter Amstutz

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16271 Arvados Task New Normal Review Peter Amstutz

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15666 Arvados Task New Normal Review Peter Amstutz

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15553 Arvados Task New Normal Review Peter Amstutz

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14954 Arvados Task New Normal Review Peter Amstutz

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13289 Arvados Task New Normal Investigate Peter Amstutz

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13096 Arvados Story New Normal Investigate packrat to lock down R package dependencies Peter Amstutz

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12609 Arvados Task New Normal Diagnose Peter Amstutz

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12527 Arvados Story New Normal [Composer] Refactor to separate vendor-specific pieces and all them to be replaced Peter Amstutz

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12067 Arvados Task New Normal Instrumentation Peter Amstutz

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2984 Tapestry Feature New Normal hard-code link to personalgenomes.org/people Phil Hodgson

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2980 Tapestry Bug New Normal attempting to authorize a disabled page should not redirect Phil Hodgson

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2966 Tapestry Task New Normal Consider a section option for Absolute Pitch Survey Phil Hodgson

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2850 Tapestry Story New Normal Comprehensive "Sectioning" of Tapestry Phil Hodgson

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2552 Tapestry Story New Normal Configurable mini-consent form and validations Phil Hodgson

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2544 Tapestry Story New Normal The "site override" feature is tested Phil Hodgson

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2427 Tapestry Task New Normal write functional tests Phil Hodgson

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2426 Tapestry Task New Normal write unit tests Phil Hodgson

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2425 Tapestry Task New Normal write functional tests Phil Hodgson

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2424 Tapestry Task New Normal write unit tests Phil Hodgson

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9044 Arvados Story New Normal [Crunch2] [Workbench] Browse and show tools using the GA4GH tool registry API Radhika Chippada

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19508 Arvados Task New Normal Review Sarah Zaranek

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19222 Arvados Story New Normal Planning for user guide rewrite Sarah Zaranek

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16062 Arvados Support New Normal Record demo videos Sarah Zaranek

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16055 Arvados Support New Normal User guide updated Sarah Zaranek

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19462 Arvados Workbench 2 Bug New Normal Use WCAG standards to decide on new color scheme for wb2 Sarah Zaranek

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19457 Arvados Workbench 2 Bug New Normal Change cyan color of buttons Sarah Zaranek

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19433 Arvados Workbench 2 Bug New Normal Change cyan color and light grey in color scheme ? Sarah Zaranek

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19444 Arvados Task New Normal Review Stephen Smith

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19438 Arvados Bug New Normal Show resource requests for containers Stephen Smith

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19395 Arvados Task New Normal Review Stephen Smith

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19319 Arvados Feature New Normal Display container price information Stephen Smith

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19294 Arvados Bug New Normal WB2 sharing screen, shared user name is too long and makes it hard to read and difficult to click Stephen Smith

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19117 Arvados Task New Normal Review Stephen Smith

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18968 Arvados Story New Normal Should be able to pick directories within collections Stephen Smith

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19306 Arvados Workbench 2 Bug New Normal Share dialog only shows remote user's UUIDs Stephen Smith

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19563 Arvados Bug New Normal crunch-run upload step possibly buffers too much Tom Clegg

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19501 Arvados Bug New Normal unsetup should remove all sharing permissions for the deactivated user Tom Clegg

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19450 Arvados Task New Normal Review Tom Clegg

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19445 Arvados Task New Normal Review Tom Clegg

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19418 Arvados Bug New Normal [dispatch-lsf] Use InstanceTypes config to cancel containers with unsatisfiable requirements, not LSF "reason" string Tom Clegg

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19377 Arvados Feature New Normal [diagnostics] show health-check response Tom Clegg

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19234 Arvados Bug New Normal New keepstore s3 driver needs non-empty "region" to work with GCP Tom Clegg

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18997 Arvados Story New Normal ability to migrate arvbox to arvados-server boot dev mode Tom Clegg

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18863 Arvados Feature New Normal [controller] add background job to clean up old container log records Tom Clegg

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18071 Arvados Feature New Normal Use postgresql advisory locks to prevent concurrent dispatcher / keep-balance processes Tom Clegg

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17185 Arvados Feature New Normal [adc] add broken node metrics Tom Clegg

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16764 Arvados Task New Normal Review Tom Clegg

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16546 Arvados Task New Normal Review Tom Clegg

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16161 Arvados Feature New Normal easy aggregate metrics with prometheus Tom Clegg

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15912 Arvados Task New Normal Review Tom Clegg

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15505 Arvados Task New Normal Review Tom Clegg

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13388 Arvados Feature New Normal [Epic] Zero-downtime upgrade Tom Clegg

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13355 Arvados Task New Normal Review Tom Clegg

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11679 Arvados Bug New Normal [Workbench] Logs containers with undefined exit code Tom Clegg

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11571 Arvados Task New Normal Review Tom Clegg

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10073 Arvados Task New Normal Transition plan Tom Clegg

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10046 Arvados Task New Normal rails systemd unit or nginx config Tom Clegg

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9158 Arvados Task New Normal Skip expensive setup/teardown, too Tom Clegg

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8126 Arvados Task New Normal Review Tom Clegg

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6127 Arvados Task New Normal Preserve template goal through login->UA->profile->back-to-work process, and then convert template to instance goal Tom Clegg

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6126 Arvados Task New Normal Decide URL and advice for appropriate next step when in "pipeline goal" mode Tom Clegg

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6125 Arvados Task New Normal Enter goal mode when hitting Run on a pipeline template Tom Clegg

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6124 Arvados Task New Normal Add "goal mode" infrastructure Tom Clegg

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5938 Arvados Task New Normal Handle normal container startup and shutdown races without logging an error/notice or missing the first interval Tom Clegg

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5862 Arvados Task New Normal Fill in component params from pipeline params in a-r-p-i Tom Clegg

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5861 Arvados Task New Normal Allow editing pipeline parameters in workbench Tom Clegg

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5860 Arvados Task New Normal Provide detail about expected information/presentation Tom Clegg

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5853 Arvados Task New Normal Document pipeline parameters API Tom Clegg

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5560 Arvados Bug New Normal [DRAFT] [API] Good API for accessing the old_ and new_attributes in Logs table properties column Tom Clegg

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5523 Arvados Bug New Normal [Crunch] crunchstat should not report errors during normal timing races Tom Clegg

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5454 Arvados Task New Normal Prototype keep-to-s3 gateway Tom Clegg

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4611 Arvados Task New Normal Update doc to match current plans Tom Clegg

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4456 Arvados Feature New Normal [Workbench] Provide more feedback about when a queued job is likely to start. Tom Clegg

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3304 Arvados Story New Normal [Workbench] Add checkboxes to multi-type chooser modal to filter by object type Tom Clegg

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3192 Arvados Task New Normal Clarify requirements/implementation Tom Clegg

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3189 Arvados Task New Normal [Blocker] Clarify design/requirements Tom Clegg

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1490 GET-Evidence Support New Normal GeneTests Tom Clegg

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1104 GET-Evidence Bug New Normal Division by zero warning when computing progress percentage Tom Clegg

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519 GET-Evidence Feature New Normal Use "BED" / "BED Detail" format instead of GFF Tom Clegg

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518 GET-Evidence Bug New Normal Handle "data set is no longer public" during import_genomes Tom Clegg

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517 GET-Evidence Feature New Normal Genome links should indicate which data set(s) actually support the variant call Tom Clegg

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515 GET-Evidence Bug New Normal 'Undefined' notices Tom Clegg

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514 GET-Evidence Bug New Normal ereg Deprecated in PHP 5.3.0 Tom Clegg

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509 GET-Evidence Bug New Normal Clean up runt variants imported by PharmGKB Tom Clegg

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507 GET-Evidence Feature New Normal Report of insufficiently evaluated variants meeting autoscore thresholds Tom Clegg

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506 GET-Evidence Bug New Normal Standardize gene names (correctly) Tom Clegg

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503 GET-Evidence Bug New Normal Import aachanges starting with termination (eg. METTL8-X379R) Tom Clegg

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502 GET-Evidence Feature New Normal Update PGP2,3,5,7,8,10 on snp.med and evidence.PG Tom Clegg

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501 GET-Evidence Feature New Normal GWAS - mark existing "not reviewed" variants as "pathogenic" Tom Clegg

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500 GET-Evidence Bug New Normal Trait-o-matic GET-E importer "AttributeError: 'tuple' object has no attribute 'remove'" Tom Clegg

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499 GET-Evidence Feature New Normal Merge rsids and AA-variant pages Tom Clegg

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