Prioritized open issues

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# Project Tracker Status Priority Subject Assigned To % Done
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499 GET-Evidence Feature New Normal Merge rsids and AA-variant pages Tom Clegg

500 GET-Evidence Bug New Normal Trait-o-matic GET-E importer "AttributeError: 'tuple' object has no attribute 'remove'" Tom Clegg

501 GET-Evidence Feature New Normal GWAS - mark existing "not reviewed" variants as "pathogenic" Tom Clegg

502 GET-Evidence Feature New Normal Update PGP2,3,5,7,8,10 on snp.med and evidence.PG Tom Clegg

503 GET-Evidence Bug New Normal Import aachanges starting with termination (eg. METTL8-X379R) Tom Clegg

506 GET-Evidence Bug New Normal Standardize gene names (correctly) Tom Clegg

507 GET-Evidence Feature New Normal Report of insufficiently evaluated variants meeting autoscore thresholds Tom Clegg

509 GET-Evidence Bug New Normal Clean up runt variants imported by PharmGKB Tom Clegg

514 GET-Evidence Bug New Normal ereg Deprecated in PHP 5.3.0 Tom Clegg

515 GET-Evidence Bug New Normal 'Undefined' notices Tom Clegg

516 GET-Evidence Feature New Normal Add conservation track from ucsc

517 GET-Evidence Feature New Normal Genome links should indicate which data set(s) actually support the variant call Tom Clegg

518 GET-Evidence Bug New Normal Handle "data set is no longer public" during import_genomes Tom Clegg

519 GET-Evidence Feature New Normal Use "BED" / "BED Detail" format instead of GFF Tom Clegg

529 GET-Evidence Feature New Normal Interpret phased (haplotype) data Evan Maxwell

533 GET-Evidence Bug New Normal PGP11 genome report has error messages

539 GET-Evidence Feature New Normal call synonymous amino acids that match pathogenic reference alleles (e.g. F5 R534R)

540 GET-Evidence Bug In Progress Normal Textile download link broken (404 Error) during install

556 GET-Evidence Bug New Normal Visualization improvements

578 GET-Evidence Feature Feedback Normal Improve reporting of variant/allele frequencies

601 GET-Evidence Feature New Normal Find consensus nonref alleles & call when matching ref

696 GET-Evidence Feature New Normal Add Google Search API

714 GET-Evidence Feature New Normal Add spam-control measures

775 GET-Evidence Bug New Normal https://evidence.personalgenomes.org/ should not show huPGP site

925 GET-Evidence Feature In Progress Normal Add EVS frequency data Tom Clegg

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