Project

General

Profile

Prioritized open issues

Apply Clear

# Project Tracker Status Priority Subject Assigned To % Done
  Normal 1699 Collapse all/Expand all
10046 Arvados Task New Normal rails systemd unit or nginx config Tom Clegg

Actions
9541 Arvados Feature In Progress Normal [Keep] Handle HEAD requests without allocating a data buffer Tom Clegg

Actions
9158 Arvados Task New Normal Skip expensive setup/teardown, too Tom Clegg

Actions
9103 Arvados Task In Progress Normal Skip collection performance tests in Python SDK suite Tom Clegg

Actions
9017 Arvados Feature In Progress Normal [Tests] Make slow tests optional (e.g., run-tests.sh --short) Tom Clegg

Actions
8126 Arvados Task New Normal Review Tom Clegg

Actions
6127 Arvados Task New Normal Preserve template goal through login->UA->profile->back-to-work process, and then convert template to instance goal Tom Clegg

Actions
6126 Arvados Task New Normal Decide URL and advice for appropriate next step when in "pipeline goal" mode Tom Clegg

Actions
6125 Arvados Task New Normal Enter goal mode when hitting Run on a pipeline template Tom Clegg

Actions
6124 Arvados Task New Normal Add "goal mode" infrastructure Tom Clegg

Actions
5938 Arvados Task New Normal Handle normal container startup and shutdown races without logging an error/notice or missing the first interval Tom Clegg

Actions
5862 Arvados Task New Normal Fill in component params from pipeline params in a-r-p-i Tom Clegg

Actions
5861 Arvados Task New Normal Allow editing pipeline parameters in workbench Tom Clegg

Actions
5860 Arvados Task New Normal Provide detail about expected information/presentation Tom Clegg

Actions
5853 Arvados Task New Normal Document pipeline parameters API Tom Clegg

Actions
5560 Arvados Bug New Normal [DRAFT] [API] Good API for accessing the old_ and new_attributes in Logs table properties column Tom Clegg

Actions
5523 Arvados Bug New Normal [Crunch] crunchstat should not report errors during normal timing races Tom Clegg

Actions
5454 Arvados Task New Normal Prototype keep-to-s3 gateway Tom Clegg

Actions
4611 Arvados Task New Normal Update doc to match current plans Tom Clegg

Actions
4456 Arvados Feature New Normal [Workbench] Provide more feedback about when a queued job is likely to start. Tom Clegg

Actions
3304 Arvados Story New Normal [Workbench] Add checkboxes to multi-type chooser modal to filter by object type Tom Clegg

Actions
3192 Arvados Task New Normal Clarify requirements/implementation Tom Clegg

Actions
3189 Arvados Task New Normal [Blocker] Clarify design/requirements Tom Clegg

Actions
1490 GET-Evidence Support New Normal GeneTests Tom Clegg

Actions
1104 GET-Evidence Bug New Normal Division by zero warning when computing progress percentage Tom Clegg

Actions
925 GET-Evidence Feature In Progress Normal Add EVS frequency data Tom Clegg

Actions
519 GET-Evidence Feature New Normal Use "BED" / "BED Detail" format instead of GFF Tom Clegg

Actions
518 GET-Evidence Bug New Normal Handle "data set is no longer public" during import_genomes Tom Clegg

Actions
517 GET-Evidence Feature New Normal Genome links should indicate which data set(s) actually support the variant call Tom Clegg

Actions
515 GET-Evidence Bug New Normal 'Undefined' notices Tom Clegg

Actions
514 GET-Evidence Bug New Normal ereg Deprecated in PHP 5.3.0 Tom Clegg

Actions
509 GET-Evidence Bug New Normal Clean up runt variants imported by PharmGKB Tom Clegg

Actions
507 GET-Evidence Feature New Normal Report of insufficiently evaluated variants meeting autoscore thresholds Tom Clegg

Actions
506 GET-Evidence Bug New Normal Standardize gene names (correctly) Tom Clegg

Actions
503 GET-Evidence Bug New Normal Import aachanges starting with termination (eg. METTL8-X379R) Tom Clegg

Actions
502 GET-Evidence Feature New Normal Update PGP2,3,5,7,8,10 on snp.med and evidence.PG Tom Clegg

Actions
501 GET-Evidence Feature New Normal GWAS - mark existing "not reviewed" variants as "pathogenic" Tom Clegg

Actions
500 GET-Evidence Bug New Normal Trait-o-matic GET-E importer "AttributeError: 'tuple' object has no attribute 'remove'" Tom Clegg

Actions
499 GET-Evidence Feature New Normal Merge rsids and AA-variant pages Tom Clegg

Actions
498 GET-Evidence Feature New Normal Show nucleotide positions for all dbSNP-keyed variants Tom Clegg

Actions
495 GET-Evidence Bug New Normal Allele frequency missing for rs41281314 Tom Clegg

Actions
494 GET-Evidence Bug New Normal Warning about automatic logout Tom Clegg

Actions
493 GET-Evidence Feature New Normal Variant and Gene Removal Tom Clegg

Actions
490 GET-Evidence Feature In Progress Normal Classify web-hits as relevant/not-relevant Tom Clegg

Actions
488 GET-Evidence Feature New Normal Allow non-nsSNP variants Tom Clegg

Actions
486 GET-Evidence Feature New Normal support publications without PMIDs (other namespaces? original contributions? OWW?) Tom Clegg

Actions
485 GET-Evidence Feature New Normal Don't let users add variant pages for genes that aren't in knownGene Tom Clegg

Actions
484 GET-Evidence Feature New Normal Figure out better solution to HNF1A-Ser574Gly (genomes) vs. HNF1A-Gly574Ser (omim) Tom Clegg

Actions
483 GET-Evidence Feature New Normal Handle/prevent edit conflicts more effectively Tom Clegg

Actions
482 GET-Evidence Feature New Normal add “affects self (hom or dominant)” checkbox (vs “affects offspring”) on result page Tom Clegg

Actions
481 GET-Evidence Feature New Normal Test Internet Explorer, possibly use Chrome Frame to make editing features work in IE Tom Clegg

Actions
479 GET-Evidence Bug New Normal NSF-Lys702Asn shows wrong hapmap frequency Tom Clegg

Actions
478 GET-Evidence Bug New Normal Keep "overall odds ratio" updated when editing individual sets of OR figures Tom Clegg

Actions
426 GET-Evidence Feature In Progress Normal Use compute cloud for back-end processing Tom Clegg

Actions
451 longupload Bug New Normal handle xmlhttprequest timeouts gracefully Tom Clegg

Actions
9026 Tapestry Task New Normal Retrieve coverage metadata from get-evidence jobs Tom Clegg

Actions
8796 Tapestry Task New Normal Poll arvados for finished pipelines, resolve/reject relevant ArvadosJob Tom Clegg

Actions
8794 Tapestry Task New Normal Notify user that transfer has been initiated Tom Clegg

Actions
8707 Tapestry Feature In Progress Normal Arvados job: download data from remote site into Keep Tom Clegg

Actions
8697 Tapestry Feature In Progress Normal Check for finished download/processing jobs Tom Clegg

Actions
8689 Tapestry Feature In Progress Normal Trigger an arvados job to retrieve the data and import it into Keep Tom Clegg

Actions
6924 Tapestry Bug In Progress Normal Google survey participation link should work for newly created surveys, too Tom Clegg

Actions
6915 Tapestry Task New Normal review 6914-prepopulate-twin-recontact-fields-when-reconsenting Tom Clegg

Actions
1471 Tapestry Bug New Normal Researcher > Kits table content loads very slowly Tom Clegg

Actions
15811 Arvados Task In Progress Normal Review 15573-deprecate-atat-filter Tom Morris

Actions
10830 Arvados Feature New Normal [Workbench] Support array type input parameters to Workflows Tom Morris

Actions
10354 Arvados Story New Normal Add varchar_pattern_ops to all relevant PostgreSQL UUID indexes Tom Morris

Actions
9967 Arvados Bug New Normal [keep-balance] Do not delete blocks referenced by collections with replication_desired=0 Tom Morris

Actions
9965 Arvados Bug New Normal [CWL][Crunch][Crunch2] crunchrunner should ignore hidden directories when uploading to keep Tom Morris

Actions
9964 Arvados Bug New Normal [CWL][Crunch2][Crunch] crunchrunner should use CWL globs to output data to keep Tom Morris

Actions
9937 Arvados Story New Normal [Workbench] file upload should provide progress bar for overall upload, not just individual files Tom Morris

Actions
9802 Arvados Feature New Normal [Workbench UI] Pipeline instances should have a link to view the CWL file used. Tom Morris

Actions
9592 Arvados Story New Normal [FUSE] rmdir on CollectionDirectory sets expires_at Tom Morris

Actions
9591 Arvados Story New Normal [FUSE] Undelete collections by moving them out of the TrashDirectory Tom Morris

Actions
9590 Arvados Story New Normal [FUSE] Trash directory to list, inspect, and un-trash trashed collections Tom Morris

Actions
9584 Arvados Story New Normal [FUSE] Don't display expiring collections in regular collection listings Tom Morris

Actions
9441 Arvados Story New Normal [Workbench] Improve user page group memberships management [to be groomed] Tom Morris

Actions
6130 Arvados Bug New Normal [Workbench] Support searching collections by their collection name Tom Morris

Actions
5713 Arvados Bug New Normal [FUSE] File access sometimes takes too long on su92l Tom Morris

Actions
5415 Arvados Feature New Normal [Workbench] Improve presentation of anonymously-viewed collections (via both "sharing link" and regular copy-and-pasted Location) Tom Morris

Actions
3976 Arvados Bug New Normal [API] Non-admin users should see all nodes with crunch_worker_state busy/idle, regardless of ping age. Tom Morris

Actions
14214 Arvados Workbench 2 Story In Progress Normal [Workbench] Show expand icons only for expandable tree nodes Tom Morris

Actions
18668 Arvados Feature In Progress Normal [deduplication report] add project support Ward Vandewege

Actions
18616 Arvados Task New Normal Review Ward Vandewege

Actions
18609 Arvados Task New Normal Review Ward Vandewege

Actions
18278 Arvados Bug New Normal [k8s] start using an ingress Ward Vandewege

Actions
18235 Arvados Task New Normal Review Ward Vandewege

Actions
18234 Arvados Task New Normal Review Ward Vandewege

Actions
17991 Arvados Task In Progress Normal Review #17990 arvados-formula:commit:1ad296f, branch 17990-add-rvm-to-ubuntu1804 Ward Vandewege

Actions
17876 Arvados Task New Normal Review Ward Vandewege

Actions
17846 Arvados Bug New Normal [tutorial] inconsistencies/roadbumps Ward Vandewege

Actions
17660 Arvados Task In Progress Normal Review 17209-http-forward Ward Vandewege

Actions
17502 Arvados Task In Progress Normal need help finding docker contain to run correct java version for PharmCAT Ward Vandewege

Actions
17313 Arvados Feature New Normal [Documentation] improve federation documentation Ward Vandewege

Actions
17283 Arvados Task New Normal Review Ward Vandewege

Actions
17277 Arvados Task New Normal Make sure machine is configured to respond for that virtual host Ward Vandewege

Actions
16832 Arvados Bug New Normal replace linkchecker in our build environment Ward Vandewege

Actions
16389 Arvados Feature In Progress Normal [k8s] add support for Amazon EKS Ward Vandewege

Actions
13484 Arvados Story New Normal Support multiple load-balanced API server nodes Ward Vandewege

Actions
6072 GET-Evidence Task New Normal Setup OAuth2 credentials with Google Ward Vandewege

Actions
(201-300/1722) Per page: 25, 50, 100

Also available in: Atom CSV PDF