Prioritized open issues

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# Project Tracker Status Priority Subject Assigned To % Done
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519 GET-Evidence Feature New Normal Use "BED" / "BED Detail" format instead of GFF Tom Clegg

518 GET-Evidence Bug New Normal Handle "data set is no longer public" during import_genomes Tom Clegg

517 GET-Evidence Feature New Normal Genome links should indicate which data set(s) actually support the variant call Tom Clegg

516 GET-Evidence Feature New Normal Add conservation track from ucsc

515 GET-Evidence Bug New Normal 'Undefined' notices Tom Clegg

514 GET-Evidence Bug New Normal ereg Deprecated in PHP 5.3.0 Tom Clegg

509 GET-Evidence Bug New Normal Clean up runt variants imported by PharmGKB Tom Clegg

507 GET-Evidence Feature New Normal Report of insufficiently evaluated variants meeting autoscore thresholds Tom Clegg

506 GET-Evidence Bug New Normal Standardize gene names (correctly) Tom Clegg

503 GET-Evidence Bug New Normal Import aachanges starting with termination (eg. METTL8-X379R) Tom Clegg

502 GET-Evidence Feature New Normal Update PGP2,3,5,7,8,10 on snp.med and evidence.PG Tom Clegg

501 GET-Evidence Feature New Normal GWAS - mark existing "not reviewed" variants as "pathogenic" Tom Clegg

500 GET-Evidence Bug New Normal Trait-o-matic GET-E importer "AttributeError: 'tuple' object has no attribute 'remove'" Tom Clegg

499 GET-Evidence Feature New Normal Merge rsids and AA-variant pages Tom Clegg

498 GET-Evidence Feature New Normal Show nucleotide positions for all dbSNP-keyed variants Tom Clegg

495 GET-Evidence Bug New Normal Allele frequency missing for rs41281314 Tom Clegg

494 GET-Evidence Bug New Normal Warning about automatic logout Tom Clegg

493 GET-Evidence Feature New Normal Variant and Gene Removal Tom Clegg

488 GET-Evidence Feature New Normal Allow non-nsSNP variants Tom Clegg

486 GET-Evidence Feature New Normal support publications without PMIDs (other namespaces? original contributions? OWW?) Tom Clegg

485 GET-Evidence Feature New Normal Don't let users add variant pages for genes that aren't in knownGene Tom Clegg

484 GET-Evidence Feature New Normal Figure out better solution to HNF1A-Ser574Gly (genomes) vs. HNF1A-Gly574Ser (omim) Tom Clegg

483 GET-Evidence Feature New Normal Handle/prevent edit conflicts more effectively Tom Clegg

482 GET-Evidence Feature New Normal add “affects self (hom or dominant)” checkbox (vs “affects offspring”) on result page Tom Clegg

481 GET-Evidence Feature New Normal Test Internet Explorer, possibly use Chrome Frame to make editing features work in IE Tom Clegg

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