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# Project Tracker Status Priority Subject Assigned To % Done
  Urgent 1 Collapse all/Expand all
835 GET-Evidence Bug New Urgent Error when saving edits or submitting

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  High 7 Collapse all/Expand all
468 GET-Evidence Bug New High latest-flat incorrectly displays non single-base substitution variants

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17434 Arvados Bug New High project not shown in hierarchy on the left of wb2

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17396 Arvados Bug New High Favorites copy dialog further issues

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17300 Arvados Bug New High array of array of File causes 'NoneType' object has no attribute 'resolved'

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16325 Arvados Bug New High Logs/outputs from Cancelled processes don't have properties.type="log"/"output"

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16228 Arvados Bug New High NullPointerException while uploading file using Java SDK

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15183 Arvados Bug New High [Workbench2] No errors reported when file is missing a block

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  Normal 1668 Collapse all/Expand all
16554 Tapestry Feature New Normal opt-in participant survey reminders

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11152 Tapestry Bug New Normal "There are 4 third party activities currently seeking participants." - but there are 5

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10145 Tapestry Story New Normal Provide link to project/colleciton that datasets reside in that are public from users profile page

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9673 Tapestry Support New Normal New consent doc for Harvard PGP

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9672 Tapestry Bug New Normal Install extension to allow password reset on RT

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9411 Tapestry Support New Normal Change 30 day release window to 31 days

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9284 Tapestry Feature New Normal Welcome e-mail feature

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9027 Tapestry Feature New Normal Incorporate coverage info from get-evidence dataset_reports in publication statistics

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9026 Tapestry Task New Normal Retrieve coverage metadata from get-evidence jobs Tom Clegg

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8796 Tapestry Task New Normal Poll arvados for finished pipelines, resolve/reject relevant ArvadosJob Tom Clegg

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8794 Tapestry Task New Normal Notify user that transfer has been initiated Tom Clegg

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8707 Tapestry Feature In Progress Normal Arvados job: download data from remote site into Keep Tom Clegg

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8698 Tapestry Feature New Normal When UserFile data is updated, if it has a suitable data type, submit report-generator jobs

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8697 Tapestry Feature In Progress Normal Check for finished download/processing jobs Tom Clegg

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8689 Tapestry Feature In Progress Normal Trigger an arvados job to retrieve the data and import it into Keep Tom Clegg

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8322 Tapestry Bug New Normal Specimens showing up in profile but not in "/specimens" page

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8155 Tapestry Bug New Normal Fix bulk mail "send" link

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7826 Tapestry Bug New Normal Make sure that datasets which are served from Keep via get-evidence have collections

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7815 Tapestry Feature New Normal If a dataset has been released to a user but they have not seen it yet, force-redirect to /specimen_analysis_data after they log in

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7673 Tapestry Bug New Normal OH integration token appears to time out after a while, user is presented with 'refresh token'

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7134 Tapestry Story New Normal Set up sandbox development environment with a dummy keep server and some real data

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6925 Tapestry Task New Normal Review 6924-survey-field-id Ward Vandewege

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6924 Tapestry Bug In Progress Normal Google survey participation link should work for newly created surveys, too Tom Clegg

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6915 Tapestry Task New Normal review 6914-prepopulate-twin-recontact-fields-when-reconsenting Tom Clegg

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6634 Tapestry Feature New Normal improve open humans flow

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6467 Tapestry Feature New Normal upgrade to reCAPTCHA v2

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6412 Tapestry Bug New Normal Admin cannot use UserFilesController#reprocess unless admin account is marked "enrolled"

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6257 Tapestry Story In Progress Normal Add public facing database dump, cron job and Arvados upload Abram Connelly

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6226 Tapestry Bug New Normal 'whget' still used in Tapestry. datasets.data_size is null.

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5683 Tapestry Bug New Normal Trait surveys incomplete listed on a lot of entries in the WGS data page. Sounds like a bug.

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5572 Tapestry Bug New Normal 'data_type' field in profile JSON report does not correctly have type

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5571 Tapestry Feature New Normal Add huID to 'aaData' entries in 'public_genetic_data.json' request

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5380 Tapestry Feature New Normal Public profiles: add JSON for Enrollment History

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5379 Tapestry Feature New Normal Public profiles: add JSON for Absolute Pitch Survey

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5378 Tapestry Feature New Normal Public profiles: add JSON for Samples

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5377 Tapestry Feature New Normal Public profiles: add JSON for PHR data

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5229 Tapestry Task New Normal Review 4766 Ward Vandewege

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4979 Tapestry Feature New Normal Improve sample tracking to allow for bulk marking of samples

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3225 Tapestry Task New Normal Review 2930 Ward Vandewege

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3025 Tapestry Feature New Normal Add an admin interface feature to export all enrolled users + shipping address as a csv file.

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3011 Tapestry Task New Normal Review 2979

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2984 Tapestry Feature New Normal hard-code link to personalgenomes.org/people Phil Hodgson

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2980 Tapestry Bug New Normal attempting to authorize a disabled page should not redirect Phil Hodgson

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2966 Tapestry Task New Normal Consider a section option for Absolute Pitch Survey Phil Hodgson

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2947 Tapestry Bug New Normal When a waitlisted user revisits the eligibility questionnaire and removes their obstacle for eligibility, they are not automatically removed from the waitlist.

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2850 Tapestry Story New Normal Comprehensive "Sectioning" of Tapestry Phil Hodgson

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2595 Tapestry Task New Normal Specify desired authorizations scheme for Tapestry

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2552 Tapestry Story New Normal Configurable mini-consent form and validations Phil Hodgson

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2545 Tapestry Bug New Normal broken links on /admin/removal_requests

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2544 Tapestry Story New Normal The "site override" feature is tested Phil Hodgson

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2431 Tapestry Feature New Normal upgrade to ruby 2.1

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2430 Tapestry Feature New Normal upgrade to rails 3.2

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2429 Tapestry Feature New Normal upgrade to rails 3.1

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2428 Tapestry Feature New Normal upgrade to ruby 1.9.3

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2427 Tapestry Task New Normal write functional tests Phil Hodgson

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2426 Tapestry Task New Normal write unit tests Phil Hodgson

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2425 Tapestry Task New Normal write functional tests Phil Hodgson

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2424 Tapestry Task New Normal write unit tests Phil Hodgson

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2423 Tapestry Feature New Normal enrollment step automated tests

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2422 Tapestry Feature New Normal exam automated tests

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2231 Tapestry Feature New Normal add flag to choose locale Ward Vandewege

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1836 Tapestry Bug New Normal when Tapestry fails to send e-mail, user should not be presented with an "sorry, something went wrong" message Ward Vandewege

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1633 Tapestry Feature New Normal Make eligibility questionnaire customizable for a specific site's requirements

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1632 Tapestry Feature New Normal detect missing configuration variables on startup Ward Vandewege

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1615 Tapestry Bug New Normal People who are not enrolled should not be able to use the 'withdraw' function Ward Vandewege

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1520 Tapestry Bug New Normal auto-enrollment feature should be configurable Ward Vandewege

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1483 Tapestry Bug New Normal No feedback shown when failed Eligibility Questionnaire

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1478 Tapestry Bug New Normal nowhere to enter postal/zip code

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1471 Tapestry Bug New Normal Researcher > Kits table content loads very slowly Tom Clegg

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1461 Tapestry Bug New Normal Firefox compatibility problem in kit_design creation

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1457 Tapestry Bug New Normal When in /admin/users, menu choice for genetic data stats is messed up

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1454 Tapestry Bug New Normal On user info page, clicking "Promote" should reload that page, not load the edit user page

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1427 Tapestry Feature New Normal As an administrator, I can see the (not-actually-public) public profile page of a suspended participant / participant who withdrew and requested data removal

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1385 Tapestry Feature New Normal As a participant, I can see a list of datasets contributed by 3rd party studies, which I can inspect (download) and release to my public profile

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1384 Tapestry Feature New Normal As a participant, I can remove traitwise survey results from my public profile

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1116 Tapestry Bug New Normal Selecting kit ranges at /kits should not be case-sensitive

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451 longupload Bug New Normal handle xmlhttprequest timeouts gracefully Tom Clegg

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13639 Lightning Story New Normal Imputation and phasing flag in CGF data

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12951 Lightning Bug New Normal FastJ aggregation into SGLF takes too much memory

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12245 Lightning Bug New Normal pasta rotini-fastj does not handle tagset without ending newline

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12171 Lightning Story New Normal Create tests for 'tile-npy' programs

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11746 Lightning Story New Normal Covnert hg19 to FastJ and CGF

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11676 Lightning Story New Normal Tile library versioning specification and tool

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11675 Lightning Story New Normal Convert Harvard PGP exome data to CGF

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11674 Lightning Story New Normal Convert openSNP genotyping data to CGF

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11673 Lightning Story New Normal Extend CGF to include genotyping

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10104 Lightning Story New Normal Documentation current speed of concordance and other stats

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7300 Lightning Story New Normal Annotate Tiling 1.0 public library

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7267 Lightning Story New Normal Implement annotation on Tile Library

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5371 Lightning Story New Normal Specify GA4GH API Implementation with Lightning

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5335 Lightning Story New Normal [API] [Documentation] Specify how to find the variants in a gene

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5334 Lightning Story New Normal [API] Implement GET /callsets/{callset-name}/gvcf API call

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