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# Project Tracker Status Priority Subject Assigned To Updated % Done Hours
426 GET-Evidence Feature In Progress Normal Use compute cloud for back-end processing Tom Clegg 04/08/2011 03:06 AM

435 GET-Evidence Support In Progress High Work with Carlos et al. to integrate BioNotate annotations into GET-Evidence Tom Clegg 07/28/2011 12:35 PM

451 longupload Bug New Normal handle xmlhttprequest timeouts gracefully Tom Clegg 01/13/2011 07:04 PM

466 GET-Evidence Bug New Normal xmlrpc server is careless with huge temp files 02/11/2011 05:42 PM

468 GET-Evidence Bug New High latest-flat incorrectly displays non single-base substitution variants 04/21/2011 07:10 PM

475 GET-Evidence Feature New High add “user manager” (control membership in groups: admin, curator, lab member) Tom Clegg 02/15/2011 03:17 PM

476 GET-Evidence Feature New Low allow “lab members” group to upload/view publication PDFs Tom Clegg 02/16/2011 02:22 PM

478 GET-Evidence Bug New Normal Keep "overall odds ratio" updated when editing individual sets of OR figures Tom Clegg 02/15/2011 03:17 PM

479 GET-Evidence Bug New Normal NSF-Lys702Asn shows wrong hapmap frequency Tom Clegg 02/16/2011 02:57 PM

481 GET-Evidence Feature New Normal Test Internet Explorer, possibly use Chrome Frame to make editing features work in IE Tom Clegg 02/16/2011 02:57 PM

482 GET-Evidence Feature New Normal add “affects self (hom or dominant)” checkbox (vs “affects offspring”) on result page Tom Clegg 02/16/2011 02:57 PM

483 GET-Evidence Feature New Normal Handle/prevent edit conflicts more effectively Tom Clegg 02/16/2011 02:56 PM

484 GET-Evidence Feature New Normal Figure out better solution to HNF1A-Ser574Gly (genomes) vs. HNF1A-Gly574Ser (omim) Tom Clegg 02/16/2011 02:56 PM

485 GET-Evidence Feature New Normal Don't let users add variant pages for genes that aren't in knownGene Tom Clegg 02/16/2011 02:32 PM

486 GET-Evidence Feature New Normal support publications without PMIDs (other namespaces? original contributions? OWW?) Tom Clegg 02/16/2011 02:56 PM

488 GET-Evidence Feature New Normal Allow non-nsSNP variants Tom Clegg 02/16/2011 02:56 PM

490 GET-Evidence Feature In Progress Normal Classify web-hits as relevant/not-relevant Tom Clegg 09/01/2011 07:16 PM

493 GET-Evidence Feature New Normal Variant and Gene Removal Tom Clegg 02/15/2011 03:17 PM

494 GET-Evidence Bug New Normal Warning about automatic logout Tom Clegg 02/16/2011 02:58 PM

495 GET-Evidence Bug New Normal Allele frequency missing for rs41281314 Tom Clegg 02/15/2011 03:17 PM

496 GET-Evidence Feature New Low Import and process raw reads for Jay Flatley genome Tom Clegg 02/16/2011 02:28 PM

497 GET-Evidence Feature New Low Import and process raw reads for YRI trio data Tom Clegg 02/16/2011 02:28 PM

498 GET-Evidence Feature New Normal Show nucleotide positions for all dbSNP-keyed variants Tom Clegg 02/16/2011 02:56 PM

499 GET-Evidence Feature New Normal Merge rsids and AA-variant pages Tom Clegg 02/16/2011 02:55 PM

500 GET-Evidence Bug New Normal Trait-o-matic GET-E importer "AttributeError: 'tuple' object has no attribute 'remove'" Tom Clegg 11/07/2012 10:46 AM

501 GET-Evidence Feature New Normal GWAS - mark existing "not reviewed" variants as "pathogenic" Tom Clegg 02/16/2011 02:55 PM

502 GET-Evidence Feature New Normal Update PGP2,3,5,7,8,10 on snp.med and evidence.PG Tom Clegg 02/16/2011 02:55 PM

503 GET-Evidence Bug New Normal Import aachanges starting with termination (eg. METTL8-X379R) Tom Clegg 02/15/2011 03:17 PM

504 GET-Evidence Bug New Low Import aachanges containing periods (eg. HGC6.3-N156S) Tom Clegg 02/15/2011 03:17 PM

506 GET-Evidence Bug New Normal Standardize gene names (correctly) Tom Clegg 02/16/2011 02:45 PM

507 GET-Evidence Feature New Normal Report of insufficiently evaluated variants meeting autoscore thresholds Tom Clegg 02/16/2011 02:54 PM

509 GET-Evidence Bug New Normal Clean up runt variants imported by PharmGKB Tom Clegg 02/16/2011 02:54 PM

514 GET-Evidence Bug New Normal ereg Deprecated in PHP 5.3.0 Tom Clegg 02/15/2011 03:17 PM

515 GET-Evidence Bug New Normal 'Undefined' notices Tom Clegg 02/15/2011 03:17 PM

516 GET-Evidence Feature New Normal Add conservation track from ucsc 02/17/2011 07:08 PM

517 GET-Evidence Feature New Normal Genome links should indicate which data set(s) actually support the variant call Tom Clegg 02/15/2011 03:17 PM

518 GET-Evidence Bug New Normal Handle "data set is no longer public" during import_genomes Tom Clegg 02/16/2011 02:54 PM

519 GET-Evidence Feature New Normal Use "BED" / "BED Detail" format instead of GFF Tom Clegg 02/16/2011 02:53 PM

529 GET-Evidence Feature New Normal Interpret phased (haplotype) data Evan Maxwell 07/07/2011 02:20 PM

533 GET-Evidence Bug New Normal PGP11 genome report has error messages 03/01/2011 03:01 PM

539 GET-Evidence Feature New Normal call synonymous amino acids that match pathogenic reference alleles (e.g. F5 R534R) 03/08/2011 06:53 PM

540 GET-Evidence Bug In Progress Normal Textile download link broken (404 Error) during install 03/10/2011 07:15 PM

556 GET-Evidence Bug New Normal Visualization improvements 04/21/2011 06:48 PM

578 GET-Evidence Feature Feedback Normal Improve reporting of variant/allele frequencies 05/23/2011 09:56 PM

601 GET-Evidence Feature New Normal Find consensus nonref alleles & call when matching ref 07/07/2011 12:25 PM

696 GET-Evidence Feature New Normal Add Google Search API 09/15/2011 01:53 PM

714 GET-Evidence Feature New Normal Add spam-control measures 09/22/2011 06:59 PM

775 GET-Evidence Bug New Normal https://evidence.personalgenomes.org/ should not show huPGP site 12/06/2013 08:38 PM

835 GET-Evidence Bug New Urgent Error when saving edits or submitting 02/06/2012 04:44 PM

925 GET-Evidence Feature In Progress Normal Add EVS frequency data Tom Clegg 05/16/2012 03:30 PM

927 GET-Evidence Support In Progress Normal Update 1000 Genomes frequency data 05/18/2012 03:15 PM

1080 GET-Evidence Feature New Normal Add non-reference variant counts to metadata Madeleine Ball 08/14/2012 05:28 PM

1084 GET-Evidence Feature New Normal Add support for deCODE data Madeleine Ball 08/16/2012 11:20 AM

1085 GET-Evidence Feature New Normal Add support for Family Tree DNA (FTDNA) data Madeleine Ball 08/16/2012 11:23 AM

1104 GET-Evidence Bug New Normal Division by zero warning when computing progress percentage Tom Clegg 08/18/2012 06:45 PM

1116 Tapestry Bug New Normal Selecting kit ranges at /kits should not be case-sensitive 10/28/2013 04:54 PM

1209 GET-Evidence Bug New Normal slowness accessing http://evidence.personalgenomes.org/hu43860C Ward Vandewege 11/07/2012 10:56 AM

1370 GET-Evidence Bug New Normal broken link 01/22/2013 08:51 PM

1380 GET-Evidence Bug New Normal slowness when accessing /genomes as admin user Ward Vandewege 02/04/2013 02:36 PM

1384 Tapestry Feature New Normal As a participant, I can remove traitwise survey results from my public profile 10/28/2013 04:51 PM

1385 Tapestry Feature New Normal As a participant, I can see a list of datasets contributed by 3rd party studies, which I can inspect (download) and release to my public profile 10/28/2013 04:52 PM

1412 Tapestry Bug In Progress Low Ruby 1.9 incompatibilities 10/28/2013 04:38 PM

1427 Tapestry Feature New Normal As an administrator, I can see the (not-actually-public) public profile page of a suspended participant / participant who withdrew and requested data removal 10/28/2013 04:36 PM

1454 Tapestry Bug New Normal On user info page, clicking "Promote" should reload that page, not load the edit user page 10/28/2013 04:49 PM

1457 Tapestry Bug New Normal When in /admin/users, menu choice for genetic data stats is messed up 10/28/2013 04:40 PM

1461 Tapestry Bug New Normal Firefox compatibility problem in kit_design creation 10/28/2013 04:47 PM

1471 Tapestry Bug New Normal Researcher > Kits table content loads very slowly Tom Clegg 10/28/2013 04:46 PM

1478 Tapestry Bug New Normal nowhere to enter postal/zip code 06/10/2013 02:21 PM

1483 Tapestry Bug New Normal No feedback shown when failed Eligibility Questionnaire 06/25/2013 11:30 AM

1490 GET-Evidence Support New Normal GeneTests Tom Clegg 08/27/2013 01:29 AM

1520 Tapestry Bug New Normal auto-enrollment feature should be configurable Ward Vandewege 09/20/2013 01:33 PM

1615 Tapestry Bug New Normal People who are not enrolled should not be able to use the 'withdraw' function Ward Vandewege 03/20/2014 11:51 PM

1632 Tapestry Feature New Normal detect missing configuration variables on startup Ward Vandewege 11/20/2013 12:19 PM

1633 Tapestry Feature New Normal Make eligibility questionnaire customizable for a specific site's requirements 11/20/2013 12:50 PM

1634 Tapestry Feature New Low make it possible to disable/skip the eligiblity questionnaire 11/20/2013 12:56 PM

1836 Tapestry Bug New Normal when Tapestry fails to send e-mail, user should not be presented with an "sorry, something went wrong" message Ward Vandewege 01/05/2014 09:35 AM

2152 Arvados Task New Normal Set appropriate permissions on an instance of the GATK exome pipeline, and all of its jobs, inputs, and outputs. 05/27/2014 08:27 PM

2231 Tapestry Feature New Normal add flag to choose locale Ward Vandewege 02/26/2014 12:34 PM

2422 Tapestry Feature New Normal exam automated tests 04/01/2014 08:25 AM

2423 Tapestry Feature New Normal enrollment step automated tests 03/24/2014 01:16 PM

2424 Tapestry Task New Normal write unit tests Phil Hodgson 06/30/2014 02:27 PM

2425 Tapestry Task New Normal write functional tests Phil Hodgson 06/30/2014 02:27 PM

2426 Tapestry Task New Normal write unit tests Phil Hodgson 03/24/2014 01:16 PM

2427 Tapestry Task New Normal write functional tests Phil Hodgson 03/24/2014 01:16 PM

2428 Tapestry Feature New Normal upgrade to ruby 1.9.3 07/15/2014 01:54 PM

2429 Tapestry Feature New Normal upgrade to rails 3.1 04/04/2014 04:02 PM

2430 Tapestry Feature New Normal upgrade to rails 3.2 04/04/2014 04:02 PM

2431 Tapestry Feature New Normal upgrade to ruby 2.1 04/04/2014 04:02 PM

2544 Tapestry Story New Normal The "site override" feature is tested Phil Hodgson 04/07/2014 01:02 PM

2545 Tapestry Bug New Normal broken links on /admin/removal_requests 04/07/2014 01:29 PM

2552 Tapestry Story New Normal Configurable mini-consent form and validations Phil Hodgson 06/10/2014 10:28 AM

2595 Tapestry Task New Normal Specify desired authorizations scheme for Tapestry 05/29/2014 07:33 AM

2679 Arvados Story New Normal [API] If enabled by user via "preferences" checkbox in Workbench, notification service sends email to owner when a workflow finishes, fails, or is failing 07/06/2021 09:12 PM

2706 Arvados Feature New Normal [SDKs] Python SDK Keep client can enable "HEAD before PUT" mode when writing. Expose this as an arv-put option. 11/01/2015 01:32 AM

2822 Arvados Task New Normal [SDKs] Use Ruby SDK instead of google-api-client in arv-run-pipeline-instance 07/07/2021 06:28 PM

2850 Tapestry Story New Normal Comprehensive "Sectioning" of Tapestry Phil Hodgson 06/20/2014 05:24 PM

2889 Arvados Task New Normal Make other users' shared instances accessible via dashboard/home 05/27/2014 08:27 PM

2947 Tapestry Bug New Normal When a waitlisted user revisits the eligibility questionnaire and removes their obstacle for eligibility, they are not automatically removed from the waitlist. 06/02/2014 10:32 AM

2960 Arvados Feature New Normal Keep can stream GET and PUT requests 01/15/2020 06:58 PM

2966 Tapestry Task New Normal Consider a section option for Absolute Pitch Survey Phil Hodgson 06/04/2014 12:59 PM

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