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Bug #20462

Updated by Peter Amstutz 11 months ago

DEBUG EXIT mapper 1682618282.1297848 0.000244140625 

 DEBUG ENTER collectloc 1682618282.1298783 

 DEBUG EXIT collectloc 1682618282.132989 0.003110647201538086 

 DEBUG EXIT upload_dependencies wes-postalignment-tumor-only.cwl 1682618282.1488423 0.16721153259277344 

 DEBUG EXIT upload_workflow_deps 1682618282.1490312 15.242694616317749 

 ERROR Unhandled error: 

   string index out of range 

 Traceback (most recent call last): 

   File "/scratch/WES-Launcher-new/env/lib64/python3.7/site-packages/cwltool/main.py", line 1361, in main 

     tool, initialized_job_order_object, runtimeContext, logger=_logger 

   File "/scratch/WES-Launcher-new/env/lib64/python3.7/site-packages/arvados_cwl/executor.py", line 713, in arv_executor 

     jobmapper=jobmapper) 

   File "/scratch/WES-Launcher-new/env/lib64/python3.7/site-packages/arvados_cwl/arvworkflow.py", line 293, in upload_workflow 

     if f[n] != firstfile[n]: 

 IndexError: string index out of range

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