Bug #20462
Updated by Peter Amstutz almost 2 years ago
DEBUG EXIT mapper 1682618282.1297848 0.000244140625
DEBUG ENTER collectloc 1682618282.1298783
DEBUG EXIT collectloc 1682618282.132989 0.003110647201538086
DEBUG EXIT upload_dependencies wes-postalignment-tumor-only.cwl 1682618282.1488423 0.16721153259277344
DEBUG EXIT upload_workflow_deps 1682618282.1490312 15.242694616317749
ERROR Unhandled error:
string index out of range
Traceback (most recent call last):
File "/scratch/WES-Launcher-new/env/lib64/python3.7/site-packages/cwltool/main.py", line 1361, in main
tool, initialized_job_order_object, runtimeContext, logger=_logger
File "/scratch/WES-Launcher-new/env/lib64/python3.7/site-packages/arvados_cwl/executor.py", line 713, in arv_executor
jobmapper=jobmapper)
File "/scratch/WES-Launcher-new/env/lib64/python3.7/site-packages/arvados_cwl/arvworkflow.py", line 293, in upload_workflow
if f[n] != firstfile[n]:
IndexError: string index out of range