Idea #4566
Updated by Tom Clegg over 9 years ago
The first page about running your own compute jobs (beyond using an existing template in Workbench) dives right into the deep end with bwa-mem and some UUIDs. http://doc.arvados.org/user/topics/running-pipeline-command-line.html
Before this page we need to
* introduce the relevant concepts of pipeline templates, pipeline instances, components, and jobs
** e.g., @output_of@ and how data gets passed from one job to another in a pipeline
* offer a couple of different scenarios, with a summary of the appropriate way to build and invoke pipelines in each case (with links to the examples on the other tutorial pages).