Idea #4566
Updated by Tom Clegg over 9 years ago
The first page about running your own compute jobs (beyond using an existing template in Workbench) dives right into the deep end with bwa-mem and some UUIDs. http://doc.arvados.org/user/topics/running-pipeline-command-line.html Before this page we need to * introduce the relevant concepts of pipeline templates, pipeline instances, components, and jobs * mention the basic features of pipeline templates ** e.g., @output_of@ and how data gets passed from one job to another in a pipeline with @output_of@ ** how @script_parameters@ in a pipeline template relates to workbench UI, jobs, and task processes * offer a couple of different scenarios, with a summary of the appropriate way to build and invoke pipelines in each case (with links to the examples on the other tutorial pages).