Bug #4903
Updated by Tim Pierce over 9 years ago
Stack trace from job "qr1hi-8i9sb-1fmcoid6lfess9g":https://crvr.se/qr1hi-8i9sb-1fmcoid6lfess9g:
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1/5/2015 5:40:24 PM compute20 1 task-print 0 Traceback (most recent call last):
1/5/2015 5:40:24 PM compute20 1 task-print 0 File "/tmp/crunch-src/crunch_scripts/bwa-index", line 11, in <module>
1/5/2015 5:40:24 PM compute20 1 task-print 0 ref_dir = arvados.util.collection_extract(collection = this_job['script_parameters']['input'], path = 'reference', decompress = False)
1/5/2015 5:40:24 PM compute20 1 task-print 0 File "/usr/local/lib/python2.7/dist-packages/arvados_python_client-0.1-py2.7.egg/arvados/util.py", line 201, in collection_extract
1/5/2015 5:40:24 PM compute20 1 task-print 0 lockfile = open(path + '.lock', 'w')
1/5/2015 5:40:24 PM compute20 1 task-print 0 IOError: [Errno 2] No such file or directory: '/tmp/crunch-job/work/reference.lock'
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