Bug #6094
Updated by Peter Amstutz almost 9 years ago
Pipeline qr1hi-d1hrv-yer77lzhezepsui <pre> 2015-05-20_12:15:57 salloc: Granted job allocation 2617 2015-05-20_12:15:58 qr1hi-8i9sb-ltiwtsu42bkytce 17131 running from /usr/local/arvados/src/sdk/cli/bin/crunch-job with arvados-cli Gem version(s) 0.1.20150205181653, 0.1.20150128223752, 0.1.20150121183928, 0.1.20141209151444, 0.1.20141014201516, 0.1.20140919104705, 0.1.20140905165259, 0.1.20140827170424, 0.1.20140825141611, 0.1.20140812162850, 0.1.20140708213257, 0.1.20140707162447, 0.1.20140630151639, 0.1.20140513131358, 0.1.20140513101345, 0.1.20140414145041 2015-05-20_12:15:58 qr1hi-8i9sb-ltiwtsu42bkytce 17131 check slurm allocation 2015-05-20_12:15:58 qr1hi-8i9sb-ltiwtsu42bkytce 17131 node compute32 - 1 slots 2015-05-20_12:15:58 qr1hi-8i9sb-ltiwtsu42bkytce 17131 start 2015-05-20_12:15:58 qr1hi-8i9sb-ltiwtsu42bkytce 17131 Clean work dirs 2015-05-20_12:15:58 starting: ['srun','--nodelist=compute32','-D','/tmp','bash','-ec','mount -t fuse,fuse.keep | awk \'($3 ~ /\\ykeep\\y/){print $3}\' | xargs -r -n 1 fusermount -u -z; sleep 1; rm -rf $JOB_WORK $CRUNCH_INSTALL $CRUNCH_TMP/task $CRUNCH_TMP/src* $CRUNCH_TMP/*.cid'] 2015-05-20_12:16:00 qr1hi-8i9sb-ltiwtsu42bkytce 17131 Cleanup command exited 0 2015-05-20_12:16:00 starting: ['srun','--nodelist=compute32','/bin/sh','-ec',' if ! /usr/bin/docker.io images -q --no-trunc --all | grep -qxF b85dffb1be2ca7bc757be6ff8ae4873a45214918282ef42cc2cbc2cead63356b; then arv-get 877b0bb063029e309ec3d0624e75eeda\\+503\\/b85dffb1be2ca7bc757be6ff8ae4873a45214918282ef42cc2cbc2cead63356b\\.tar | /usr/bin/docker.io load fi '] 2015-05-20_12:16:00 starting: ['srun','--nodelist=compute32','/bin/sh','-ec','/usr/bin/docker.io run --help | grep -qe --memory-swap='] 2015-05-20_12:16:00 qr1hi-8i9sb-ltiwtsu42bkytce 17131 Packing Arvados SDK version 29009a1c1f8a9653042c5853832881aca4141cf2 for installation 2015-05-20_12:16:00 qr1hi-8i9sb-ltiwtsu42bkytce 17131 Looking for version c59093180fd92f0d7c6607a49458446212ebd058 from repository arvados 2015-05-20_12:16:00 qr1hi-8i9sb-ltiwtsu42bkytce 17131 Using local repository '/var/lib/arvados/internal.git' 2015-05-20_12:16:00 qr1hi-8i9sb-ltiwtsu42bkytce 17131 Version c59093180fd92f0d7c6607a49458446212ebd058 is commit c59093180fd92f0d7c6607a49458446212ebd058 2015-05-20_12:16:01 qr1hi-8i9sb-ltiwtsu42bkytce 17131 Run install script on all workers 2015-05-20_12:16:01 starting: ['srun','--nodelist=compute32','-D','/tmp','--job-name=qr1hi-8i9sb-ltiwtsu42bkytce','sh','-c','mkdir -p /tmp/crunch-job/opt && cd /tmp/crunch-job && perl -'] 2015-05-20_12:16:03 srun: error: compute32: task 0: Exited with exit code 141 2015-05-20_12:16:03 qr1hi-8i9sb-ltiwtsu42bkytce 17131 Install script exited 141 2015-05-20_12:16:03 salloc: Relinquishing job allocation 2617 2015-05-20_12:16:03 Collection saved as 'qr1hi-8i9sb-ltiwtsu42bkytce.log.txt' 2015-05-20_12:16:03 close failed in file object destructor: 2015-05-20_12:16:03 sys.excepthook is missing 2015-05-20_12:16:03 lost sys.stderr </pre>