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Bug #6276

Updated by Bryan Cosca almost 9 years ago

my command: 
 ['/tmp/crunch-job-work/bwa/bwa-0.7.5a/bwa', 'mem', '-t', '16', '-c', '100', '-M', '-R', '@RG\tID:RG_ID\tSM:RG_SM\tPL:RG_PL\tLB:RG_LB\tPU:RG_PU', u'/keep/3514b8e5da0e8d109946bc809b20a78a+5698/human_g1k_v37.fasta', u'/keep/3eee80c078a748a950a818157af6a172+1119/xaa.fastq.gz'] 

 log message: 
 2015-06-10_14:51:50 qr1hi-8i9sb-i52ckct0rg38xx6 3798 1 stderr 2015-06-10 14:51:50 arvados.arvados_fuse[976] WARNING: Block not found: 984fbe6728b638cfb584f20e14026b3d+67108864+A251fa8a621e86009cc976a1f6af214b7e61d2fe6@558ac402 not found:    http://keep4.qr1hi.arvadosapi.com:25107/ responded with 404 HTTP/1.1 404 Not Found\015 
 2015-06-10_14:51:50 qr1hi-8i9sb-i52ckct0rg38xx6 3798 1 stderr ;    http://keep3.qr1hi.arvadosapi.com:25107/ responded with 404 HTTP/1.1 404 Not Found\015 
 2015-06-10_14:51:50 qr1hi-8i9sb-i52ckct0rg38xx6 3798 1 stderr ;    http://keep2.qr1hi.arvadosapi.com:25107/ responded with 404 HTTP/1.1 404 Not Found\015 
 2015-06-10_14:51:50 qr1hi-8i9sb-i52ckct0rg38xx6 3798 1 stderr ;    http://keep5.qr1hi.arvadosapi.com:25107/ responded with 404 HTTP/1.1 404 Not Found\015 
 2015-06-10_14:51:50 qr1hi-8i9sb-i52ckct0rg38xx6 3798 1 stderr ;    http://keep1.qr1hi.arvadosapi.com:25107/ responded with 404 HTTP/1.1 404 Not Found\015 
 2015-06-10_14:51:50 qr1hi-8i9sb-i52ckct0rg38xx6 3798 1 stderr ;    http://keep0.qr1hi.arvadosapi.com:25107/ responded with 404 HTTP/1.1 404 Not Found\015 
 2015-06-10_14:51:50 qr1hi-8i9sb-i52ckct0rg38xx6 3798 1 stderr ;    http://keep6.qr1hi.arvadosapi.com:25107/ responded with 404 HTTP/1.1 404 Not Found\015 
 2015-06-10_14:51:50 qr1hi-8i9sb-i52ckct0rg38xx6 3798 1 stderr ;    http://keep7.qr1hi.arvadosapi.com:25107/ responded with 404 HTTP/1.1 404 Not Found\015 
 2015-06-10_14:51:50 qr1hi-8i9sb-i52ckct0rg38xx6 3798 1 stderr  

 https://cloud.curoverse.com/collections/2fc686a85146e32cb0c6a707d43add28+85/qr1hi-8i9sb-i52ckct0rg38xx6.log.txt?disposition=inline&size=32378

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