Bug #6356
Updated by Bryan Cosca almost 9 years ago
https://cloud.curoverse.com/pipeline_instances/qr1hi-d1hrv-fo8inemanlxlsow is the instance in question:
After I ran into this error:
Traceback (most recent call last):
2015-06-18_18:02:38 qr1hi-8i9sb-jqqmdpircln9fhj 28591 2 stderr File "/tmp/crunch-job/src/crunch_scripts/bwa.py", line 67, in
2015-06-18_18:02:38 qr1hi-8i9sb-jqqmdpircln9fhj 28591 2 stderr chr_pipe = subprocess.Popen(chr_args,stdout=chr_out)
2015-06-18_18:02:38 qr1hi-8i9sb-jqqmdpircln9fhj 28591 2 stderr File "/usr/lib/python2.7/subprocess.py", line 672, in __init__
2015-06-18_18:02:38 qr1hi-8i9sb-jqqmdpircln9fhj 28591 2 stderr errread, errwrite) = self._get_handles(stdin, stdout, stderr)
2015-06-18_18:02:38 qr1hi-8i9sb-jqqmdpircln9fhj 28591 2 stderr File "/usr/lib/python2.7/subprocess.py", line 1063, in _get_handles
2015-06-18_18:02:38 qr1hi-8i9sb-jqqmdpircln9fhj 28591 2 stderr c2pwrite = stdout.fileno()
2015-06-18_18:02:38 qr1hi-8i9sb-jqqmdpircln9fhj 28591 2 stderr AttributeError: 'unicode' object has no attribute 'fileno'
chr_out should have been an open file handle, but wasn't. This should not retry because it will never find the open file handle.