Bug #9485
Updated by Jiayong Li almost 8 years ago
The cwl workflow generated by bcbio_vm.py has variant calling steps "batch_for_variantcall.cwl", "get_parallel_regions.cwl", and "variantcall_batch_region.cwl". They all have variables "config__algorithm__validate" and "config__algorithm__validate_regions" passed as inputs. If we change the truth vcf/bed, the cwl of these steps will change, preventing them being reused.
Is this the intended behavior?