Bug #9611
Updated by Nico César almost 8 years ago
this is an installation in debian wheezy: <pre> apt-get install python-arvados-cwl-runner Reading package lists... Done Building dependency tree Reading state information... Done The following extra packages will be installed: python-cwltool python-rdflib python-rdflib-jsonld python-schema-salad python-sparqlwrapper The following NEW packages will be installed: python-arvados-cwl-runner python-cwltool python-rdflib python-rdflib-jsonld python-schema-salad python-sparqlwrapper 0 upgraded, 6 newly installed, 0 to remove and 79 not upgraded. Need to get 0 B/1,066 kB of archives. After this operation, 3,900 kB of additional disk space will be used. Do you want to continue [Y/n]? Selecting previously unselected package python-rdflib. (Reading database ... 80692 files and directories currently installed.) Unpacking python-rdflib (from .../python-rdflib_4.2.1-2_all.deb) ... Selecting previously unselected package python-sparqlwrapper. Unpacking python-sparqlwrapper (from .../python-sparqlwrapper_1.4.1-1_all.deb) ... Selecting previously unselected package python-rdflib-jsonld. Unpacking python-rdflib-jsonld (from .../python-rdflib-jsonld_0.3.0-2_all.deb) ... Selecting previously unselected package python-schema-salad. Unpacking python-schema-salad (from .../python-schema-salad_1.14.20160708181155-2_all.deb) ... Selecting previously unselected package python-cwltool. Unpacking python-cwltool (from .../python-cwltool_1.0.20160712154127-2_all.deb) ... Selecting previously unselected package python-arvados-cwl-runner. Unpacking python-arvados-cwl-runner (from .../python-arvados-cwl-runner_1.0.20160713211920-3_all.deb) ... Setting up python-rdflib (4.2.1-2) ... Setting up python-sparqlwrapper (1.4.1-1) ... Setting up python-rdflib-jsonld (0.3.0-2) ... Setting up python-schema-salad (1.14.20160708181155-2) ... Setting up python-cwltool (1.0.20160712154127-2) ... Setting up python-arvados-cwl-runner (1.0.20160713211920-3) ... Processing triggers for python-support ... </pre> and this is the content of: /usr/share/pyshared/SPARQLWrapper-1.4.1.egg-info/requires.txt <pre> </pre> rdflib == 2.4.2 simplejson == 2.0.9 </pre> but when I ran it... <pre> $ arvados-cwl-runner Traceback (most recent call last): File "/usr/bin/arvados-cwl-runner", line 7, in <module> sys.exit(main(sys.argv[1:], sys.stdout, sys.stderr)) File "/usr/lib/python2.7/dist-packages/arvados_cwl/__init__.py", line 315, in main job_order_object=job_order_object) File "/usr/lib/python2.7/dist-packages/cwltool/main.py", line 613, in main _logger.info(versionfunc()) File "/usr/lib/python2.7/dist-packages/arvados_cwl/__init__.py", line 224, in versionstring arvcwlpkg = pkg_resources.require("arvados-cwl-runner") File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 686, in require needed = self.resolve(parse_requirements(requirements)) File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 588, in resolve raise VersionConflict(dist,req) # XXX put more info here pkg_resources.VersionConflict: (simplejson 2.5.2 (/usr/lib/python2.7/dist-packages), Requirement.parse('simplejson==2.0.9')) </pre> which simplejson 2.5.2 comes from python-simplejson from the distro