Bug #12538
Updated by Peter Amstutz about 7 years ago
/tmp/slurm-43045.out
<pre>
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T12:25:19.562765000Z Executing container 'su92l-dz642-nwm0iyvzj9s41sb'
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T12:25:19.562833200Z Executing on host 'compute2.su92l.arvadosapi.com'
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T12:25:19.585576000Z Fetching Docker image from collection '816fafa3f6c232ba55dde9f73b2e8e0a+1435'
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T12:25:19.618615000Z Using Docker image id 'sha256:bf3a9bd0230a9f581d5a5c8f7816a529e9b84da644766b79bd926b7594fd52e4'
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T12:25:19.619444200Z Loading Docker image from keep
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T12:28:38.601230800Z Docker response: {"stream":"Loaded image ID: sha256:bf3a9bd0230a9f581d5a5c8f7816a529e9b84da644766b79bd926b7594fd52e4\n"}
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T12:28:53.393393600Z Creating Docker container
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T12:28:53.449673000Z Attaching container streams
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T12:28:53.727443500Z Starting Docker container id 'e20e8603bc7a916cb0169ba8f8440842bd01fe8c46aeed73678f314d39b01054'
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T12:28:54.182723200Z Waiting for container to finish
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T14:05:36.140991200Z Container exited with code: 0
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T14:05:43.607339600Z Uploading indexed/filtered_ADNI_021_S_4245.raw_variants.chr1.gvcf.gz (199723384 bytes)
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T14:05:45.021751100Z Uploading indexed/filtered_ADNI_021_S_4245.raw_variants.chr1.gvcf.gz.tbi (93262 bytes)
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T14:05:45.022187400Z Uploading indexed/filtered_ADNI_021_S_4245.raw_variants.chr10.gvcf.gz (110956864 bytes)
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T14:05:46.166695200Z Uploading indexed/filtered_ADNI_021_S_4245.raw_variants.chr10.gvcf.gz.tbi (53918 bytes)
...
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T14:07:56.511282300Z Uploading stage/ADNI_021_S_4245/035d.fj.gz (305872 bytes)
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T14:07:56.512564500Z Uploading stage/ADNI_021_S_4245/035d.fj.gz.gzi (15320 bytes)
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T14:07:56.512861700Z Uploading stage/ADNI_021_S_4245/035d.pa (61200691 bytes)
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T14:07:57.622218300Z Uploading stage/ADNI_021_S_4245/035e.fj.gz (8877 bytes)
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T14:07:57.623806300Z Uploading stage/ADNI_021_S_4245/035e.fj.gz.gzi (8 bytes)
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T14:07:57.624148100Z Uploading stage/ADNI_021_S_4245/035e.pa (33168 bytes)
su92l-dz642-nwm0iyvzj9s41sb 2017-11-01T14:08:04.146936600Z Complete
2017/11/01 14:08:17 StopContainer failed: Error response from daemon: No such container: e20e8603bc7a916cb0169ba8f8440842bd01fe8c46aeed73678f314d39b01054
</pre>
arv-mount is still running:
<pre>
ps ax |grep arv-mount
4225 ? Sl 21:52 /usr/bin/python2.7 /usr/bin/arv-mount --foreground --allow-other --read-write --file-cache 4294967296 --mount-by-pdh by_id /tmp/keep694723160
</pre>
keep mount is working, I can browse it.
There are no Docker containers running.