Idea #15996
Updated by Peter Amstutz almost 5 years ago
Find community-built best practices GATK4 variant calling CWL and/or create one from scratch
Run on several PGP samples using su92l
Put everything in a public project and document it thoroughly.
Stretch goals:
Second pipeline using Deep Variant
gVCF output is suitable to feed directly into the Lightning CWL for tiling.
Do some minimal automated interpretation.