Bug #17708

Updated by Ward Vandewege 12 months ago

Seeing a fatal error in a job, leading to no outputs being saved at all: job:

error in CaptureOutput: error scanning files to copy to output: Unsupported file type (mode 200000600) in output dir: "/var/spool/cwl/REDACTEDtmp/tmp.fifo.read1"

That doesn't quite seem reasonable; if there are leftover fifos or named pipes, surely that should not make crunch-run error out. Printing a warning and just skipping the files of unsupported type in the copy job would be a better way to deal with this situation.