Bug #17738
Updated by Ward Vandewege almost 3 years ago
On ce8i5, which is an Ubuntu 18.04 system with ruby 2.5.1 from the OS packages, both Both api server and workbench1 are refusing to start with the error: <pre> There was an error while trying to load the gem 'arvados'. Gem Load Error is: can't modify frozen String </pre> Versions: <pre> ii arvados-api-server 2.2.0~dev20210524183021-1 ii arvados-workbench 2.2.0~dev20210524183021-1 </pre> We're not seeing this on 9tee4 or tordo (same version of the arvados packages), which run Debian Buster (with Ruby 2.5.5p157) Full backtrace for workbench1: <pre> There was an error while trying to load the gem 'arvados'. Gem Load Error is: can't modify frozen String Backtrace for gem load error is: /var/www/arvados-workbench/current/vendor/cache/arvados-c210114aa8c7/sdk/ruby/lib/arvados/google_api_client.rb:9:in `strip!' /var/www/arvados-workbench/current/vendor/cache/arvados-c210114aa8c7/sdk/ruby/lib/arvados/google_api_client.rb:9:in `<top (required)>' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:23:in `require' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:23:in `block in require_with_bootsnap_lfi' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/loaded_features_index.rb:92:in `register' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:22:in `require_with_bootsnap_lfi' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:31:in `require' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/activesupport-5.2.4.5/lib/active_support/dependencies.rb:291:in `block in require' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/activesupport-5.2.4.5/lib/active_support/dependencies.rb:257:in `load_dependency' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/activesupport-5.2.4.5/lib/active_support/dependencies.rb:291:in `require' /var/www/arvados-workbench/current/vendor/cache/arvados-c210114aa8c7/sdk/ruby/lib/arvados.rb:11:in `<top (required)>' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:23:in `require' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:23:in `block in require_with_bootsnap_lfi' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/loaded_features_index.rb:92:in `register' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:22:in `require_with_bootsnap_lfi' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:31:in `require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:81:in `block (2 levels) in require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:76:in `each' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:76:in `block in require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:65:in `each' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:65:in `require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler.rb:114:in `require' /var/www/arvados-workbench/current/config/application.rb:22:in `<top (required)>' /var/www/arvados-workbench/current/config/environment.rb:6:in `require_relative' /var/www/arvados-workbench/current/config/environment.rb:6:in `<top (required)>' config.ru:7:in `require' config.ru:7:in `block in <main>' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/rack-2.2.3/lib/rack/builder.rb:125:in `instance_eval' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/rack-2.2.3/lib/rack/builder.rb:125:in `initialize' config.ru:1:in `new' config.ru:1:in `<main>' /usr/share/passenger/helper-scripts/rack-preloader.rb:101:in `eval' /usr/share/passenger/helper-scripts/rack-preloader.rb:101:in `preload_app' /usr/share/passenger/helper-scripts/rack-preloader.rb:189:in `block in <module:App>' /usr/lib/ruby/vendor_ruby/phusion_passenger/loader_shared_helpers.rb:390:in `run_block_and_record_step_progress' /usr/share/passenger/helper-scripts/rack-preloader.rb:188:in `<module:App>' /usr/share/passenger/helper-scripts/rack-preloader.rb:30:in `<module:PhusionPassenger>' /usr/share/passenger/helper-scripts/rack-preloader.rb:29:in `<main>' Bundler Error Backtrace: (Bundler::GemRequireError) /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:84:in `rescue in block (2 levels) in require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:80:in `block (2 levels) in require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:76:in `each' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:76:in `block in require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:65:in `each' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:65:in `require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler.rb:114:in `require' /var/www/arvados-workbench/current/config/application.rb:22:in `<top (required)>' /var/www/arvados-workbench/current/config/environment.rb:6:in `require_relative' /var/www/arvados-workbench/current/config/environment.rb:6:in `<top (required)>' config.ru:7:in `require' config.ru:7:in `block in <main>' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/rack-2.2.3/lib/rack/builder.rb:125:in `instance_eval' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/rack-2.2.3/lib/rack/builder.rb:125:in `initialize' config.ru:1:in `new' config.ru:1:in `<main>' /usr/share/passenger/helper-scripts/rack-preloader.rb:101:in `eval' /usr/share/passenger/helper-scripts/rack-preloader.rb:101:in `preload_app' /usr/share/passenger/helper-scripts/rack-preloader.rb:189:in `block in <module:App>' /usr/lib/ruby/vendor_ruby/phusion_passenger/loader_shared_helpers.rb:390:in `run_block_and_record_step_progress' /usr/share/passenger/helper-scripts/rack-preloader.rb:188:in `<module:App>' /usr/share/passenger/helper-scripts/rack-preloader.rb:30:in `<module:PhusionPassenger>' /usr/share/passenger/helper-scripts/rack-preloader.rb:29:in `<main>' The stdout/stderr output of the subprocess so far is: Error: The application encountered the following error: There was an error while trying to load the gem 'arvados'. Gem Load Error is: can't modify frozen String Backtrace for gem load error is: /var/www/arvados-workbench/current/vendor/cache/arvados-c210114aa8c7/sdk/ruby/lib/arvados/google_api_client.rb:9:in `strip!' /var/www/arvados-workbench/current/vendor/cache/arvados-c210114aa8c7/sdk/ruby/lib/arvados/google_api_client.rb:9:in `<top (required)>' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:23:in `require' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:23:in `block in require_with_bootsnap_lfi' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/loaded_features_index.rb:92:in `register' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:22:in `require_with_bootsnap_lfi' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:31:in `require' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/activesupport-5.2.4.5/lib/active_support/dependencies.rb:291:in `block in require' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/activesupport-5.2.4.5/lib/active_support/dependencies.rb:257:in `load_dependency' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/activesupport-5.2.4.5/lib/active_support/dependencies.rb:291:in `require' /var/www/arvados-workbench/current/vendor/cache/arvados-c210114aa8c7/sdk/ruby/lib/arvados.rb:11:in `<top (required)>' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:23:in `require' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:23:in `block in require_with_bootsnap_lfi' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/loaded_features_index.rb:92:in `register' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:22:in `require_with_bootsnap_lfi' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:31:in `require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:81:in `block (2 levels) in require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:76:in `each' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:76:in `block in require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:65:in `each' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:65:in `require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler.rb:114:in `require' /var/www/arvados-workbench/current/config/application.rb:22:in `<top (required)>' /var/www/arvados-workbench/current/config/environment.rb:6:in `require_relative' /var/www/arvados-workbench/current/config/environment.rb:6:in `<top (required)>' config.ru:7:in `require' config.ru:7:in `block in <main>' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/rack-2.2.3/lib/rack/builder.rb:125:in `instance_eval' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/rack-2.2.3/lib/rack/builder.rb:125:in `initialize' config.ru:1:in `new' config.ru:1:in `<main>' /usr/share/passenger/helper-scripts/rack-preloader.rb:101:in `eval' /usr/share/passenger/helper-scripts/rack-preloader.rb:101:in `preload_app' /usr/share/passenger/helper-scripts/rack-preloader.rb:189:in `block in <module:App>' /usr/lib/ruby/vendor_ruby/phusion_passenger/loader_shared_helpers.rb:390:in `run_block_and_record_step_progress' /usr/share/passenger/helper-scripts/rack-preloader.rb:188:in `<module:App>' /usr/share/passenger/helper-scripts/rack-preloader.rb:30:in `<module:PhusionPassenger>' /usr/share/passenger/helper-scripts/rack-preloader.rb:29:in `<main>' Bundler Error Backtrace: (Bundler::GemRequireError) /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:84:in `rescue in block (2 levels) in require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:80:in `block (2 levels) in require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:76:in `each' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:76:in `block in require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:65:in `each' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:65:in `require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler.rb:114:in `require' /var/www/arvados-workbench/current/config/application.rb:22:in `<top (required)>' /var/www/arvados-workbench/current/config/environment.rb:6:in `require_relative' /var/www/arvados-workbench/current/config/environment.rb:6:in `<top (required)>' config.ru:7:in `require' config.ru:7:in `block in <main>' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/rack-2.2.3/lib/rack/builder.rb:125:in `instance_eval' /var/www/arvados-workbench/shared/vendor_bundle/ruby/2.5.0/gems/rack-2.2.3/lib/rack/builder.rb:125:in `initialize' config.ru:1:in `new' config.ru:1:in `<main>' /usr/share/passenger/helper-scripts/rack-preloader.rb:101:in `eval' /usr/share/passenger/helper-scripts/rack-preloader.rb:101:in `preload_app' /usr/share/passenger/helper-scripts/rack-preloader.rb:189:in `block in <module:App>' /usr/lib/ruby/vendor_ruby/phusion_passenger/loader_shared_helpers.rb:390:in `run_block_and_record_step_progress' /usr/share/passenger/helper-scripts/rack-preloader.rb:188:in `<module:App>' /usr/share/passenger/helper-scripts/rack-preloader.rb:30:in `<module:PhusionPassenger>' /usr/share/passenger/helper-scripts/rack-preloader.rb:29:in `<main>' </pre> Full backtrace for api: <pre> There was an error while trying to load the gem 'arvados'. Gem Load Error is: can't modify frozen String Backtrace for gem load error is: /var/www/arvados-api/current/vendor/cache/arvados-81725af5d5d2/sdk/ruby/lib/arvados/google_api_client.rb:9:in `strip!' /var/www/arvados-api/current/vendor/cache/arvados-81725af5d5d2/sdk/ruby/lib/arvados/google_api_client.rb:9:in `<top (required)>' /var/www/arvados-api/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:23:in `require' /var/www/arvados-api/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:23:in `block in require_with_bootsnap_lfi' /var/www/arvados-api/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/loaded_features_index.rb:92:in `register' /var/www/arvados-api/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:22:in `require_with_bootsnap_lfi' /var/www/arvados-api/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:31:in `require' /var/www/arvados-api/shared/vendor_bundle/ruby/2.5.0/gems/activesupport-5.2.4.5/lib/active_support/dependencies.rb:291:in `block in require' /var/www/arvados-api/shared/vendor_bundle/ruby/2.5.0/gems/activesupport-5.2.4.5/lib/active_support/dependencies.rb:257:in `load_dependency' /var/www/arvados-api/shared/vendor_bundle/ruby/2.5.0/gems/activesupport-5.2.4.5/lib/active_support/dependencies.rb:291:in `require' /var/www/arvados-api/current/vendor/cache/arvados-81725af5d5d2/sdk/ruby/lib/arvados.rb:11:in `<top (required)>' /var/www/arvados-api/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:23:in `require' /var/www/arvados-api/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:23:in `block in require_with_bootsnap_lfi' /var/www/arvados-api/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/loaded_features_index.rb:92:in `register' /var/www/arvados-api/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:22:in `require_with_bootsnap_lfi' /var/www/arvados-api/shared/vendor_bundle/ruby/2.5.0/gems/bootsnap-1.4.7/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:31:in `require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:81:in `block (2 levels) in require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:76:in `each' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:76:in `block in require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:65:in `each' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:65:in `require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler.rb:114:in `require' /var/www/arvados-api/current/config/application.rb:38:in `block in <top (required)>' /var/www/arvados-api/current/config/application.rb:28:in `suppress_warnings' /var/www/arvados-api/current/config/application.rb:36:in `<top (required)>' /var/www/arvados-api/current/config/environment.rb:6:in `require_relative' /var/www/arvados-api/current/config/environment.rb:6:in `<top (required)>' config.ru:7:in `require' config.ru:7:in `block in <main>' /var/www/arvados-api/shared/vendor_bundle/ruby/2.5.0/gems/rack-2.2.3/lib/rack/builder.rb:125:in `instance_eval' /var/www/arvados-api/shared/vendor_bundle/ruby/2.5.0/gems/rack-2.2.3/lib/rack/builder.rb:125:in `initialize' config.ru:1:in `new' config.ru:1:in `<main>' /usr/share/passenger/helper-scripts/rack-preloader.rb:101:in `eval' /usr/share/passenger/helper-scripts/rack-preloader.rb:101:in `preload_app' /usr/share/passenger/helper-scripts/rack-preloader.rb:189:in `block in <module:App>' /usr/lib/ruby/vendor_ruby/phusion_passenger/loader_shared_helpers.rb:390:in `run_block_and_record_step_progress' /usr/share/passenger/helper-scripts/rack-preloader.rb:188:in `<module:App>' /usr/share/passenger/helper-scripts/rack-preloader.rb:30:in `<module:PhusionPassenger>' /usr/share/passenger/helper-scripts/rack-preloader.rb:29:in `<main>' Bundler Error Backtrace: (Bundler::GemRequireError) /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:84:in `rescue in block (2 levels) in require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:80:in `block (2 levels) in require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:76:in `each' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:76:in `block in require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:65:in `each' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler/runtime.rb:65:in `require' /var/lib/gems/2.5.0/gems/bundler-1.17.3/lib/bundler.rb:114:in `require' /var/www/arvados-api/current/config/application.rb:38:in `block in <top (required)>' /var/www/arvados-api/current/config/application.rb:28:in `suppress_warnings' /var/www/arvados-api/current/config/application.rb:36:in `<top (required)>' /var/www/arvados-api/current/config/environment.rb:6:in `require_relative' /var/www/arvados-api/current/config/environment.rb:6:in `<top (required)>' config.ru:7:in `require' config.ru:7:in `block in <main>' /var/www/arvados-api/shared/vendor_bundle/ruby/2.5.0/gems/rack-2.2.3/lib/rack/builder.rb:125:in `instance_eval' /var/www/arvados-api/shared/vendor_bundle/ruby/2.5.0/gems/rack-2.2.3/lib/rack/builder.rb:125:in `initialize' config.ru:1:in `new' config.ru:1:in `<main>' /usr/share/passenger/helper-scripts/rack-preloader.rb:101:in `eval' /usr/share/passenger/helper-scripts/rack-preloader.rb:101:in `preload_app' /usr/share/passenger/helper-scripts/rack-preloader.rb:189:in `block in <module:App>' /usr/lib/ruby/vendor_ruby/phusion_passenger/loader_shared_helpers.rb:390:in `run_block_and_record_step_progress' /usr/share/passenger/helper-scripts/rack-preloader.rb:188:in `<module:App>' /usr/share/passenger/helper-scripts/rack-preloader.rb:30:in `<module:PhusionPassenger>' /usr/share/passenger/helper-scripts/rack-preloader.rb:29:in `<main>' </pre> I've also attached the passenger error file for workbench1 and api. Versions: <pre> ii arvados-api-server 2.2.0~dev20210524183021-1 ii arvados-workbench 2.2.0~dev20210524183021-1 </pre> Workbench ruby and gems: <pre> workbench.ce8i5:~# ruby --version ruby 2.5.1p57 (2018-03-29 revision 63029) [x86_64-linux-gnu] </pre> <pre> workbench.ce8i5:/var/www/arvados-workbench/current# bundle exec gem list *** LOCAL GEMS *** actioncable (5.2.4.5) actionmailer (5.2.4.5) actionpack (5.2.4.5) actionview (5.2.4.5) activejob (5.2.4.5) activemodel (5.2.4.5) activerecord (5.2.4.5) activerecord-nulldb-adapter (0.3.9) activestorage (5.2.4.5) activesupport (5.2.4.5) addressable (2.7.0) andand (1.3.3) angularjs-rails (1.3.15) arel (9.0.0) arvados (1.5.0.pre20200114202620) arvados-google-api-client (0.8.7.4) autoparse (0.3.3) autoprefixer-rails (9.5.1.1) bootsnap (1.4.7) bootstrap-sass (3.4.1) bootstrap-tab-history-rails (0.1.0) bootstrap-x-editable-rails (1.5.1.1) builder (3.2.4) bundler (1.17.3) byebug (11.0.1) capistrano (2.15.9) capybara (2.5.0) childprocess (0.9.0) cliver (0.3.2) coffee-rails (4.2.2) coffee-script (2.4.1) coffee-script-source (1.12.2) commonjs (0.2.7) concurrent-ruby (1.1.8) crass (1.0.6) deep_merge (1.2.1) docile (1.3.1) erubi (1.10.0) execjs (2.7.0) extlib (0.9.16) faraday (0.15.4) ffi (1.10.0) flamegraph (0.9.5) globalid (0.4.2) googleauth (0.9.0) headless (1.0.2) highline (2.0.2) httpclient (2.8.3) i18n (0.9.5) jquery-rails (4.3.3) json (2.3.0) jwt (1.5.6) launchy (2.4.3) less (2.6.0) less-rails (4.0.0) libv8 (3.16.14.19 x86_64-linux) lograge (0.10.0) logstash-event (1.2.02) loofah (2.9.0) mail (2.7.1) marcel (0.3.3) memoist (0.16.2) metaclass (0.0.4) method_source (1.0.0) mime-types (3.2.2) mime-types-data (3.2019.0331) mimemagic (0.3.8) mini_mime (1.0.2) mini_portile2 (2.5.1) minitest (5.10.3) mocha (1.8.0) morrisjs-rails (0.5.1.2) msgpack (1.3.3) multi_json (1.15.0) multipart-post (2.1.1) net-scp (2.0.0) net-sftp (2.1.2) net-ssh (5.2.0) net-ssh-gateway (2.0.0) nio4r (2.5.7) nokogiri (1.11.5 x86_64-linux) npm-rails (0.2.1) oj (3.7.12) os (1.1.1) passenger (6.0.2) piwik_analytics (1.0.2) poltergeist (1.5.1) public_suffix (4.0.5) racc (1.5.2) rack (2.2.3) rack-mini-profiler (1.0.2) rack-test (1.1.0) rails (5.2.4.5) rails-controller-testing (1.0.4) rails-dom-testing (2.0.3) rails-html-sanitizer (1.3.0) rails-perftest (0.0.7) railties (5.2.4.5) rake (13.0.3) raphael-rails (2.1.2) rb-fsevent (0.10.3) rb-inotify (0.10.0) RedCloth (4.3.2) ref (2.0.0) request_store (1.4.1) responders (2.4.1) retriable (1.4.1) ruby-debug-passenger (0.2.0) ruby-prof (0.17.0) rubyzip (1.3.0) rvm-capistrano (1.5.6) safe_yaml (1.0.5) sass (3.7.4) sass-listen (4.0.0) sassc (2.0.1) sassc-rails (2.1.0) selenium-webdriver (3.141.0) signet (0.11.0) simplecov (0.16.1) simplecov-html (0.10.2) simplecov-rcov (0.2.3) sprockets (3.7.2) sprockets-rails (3.2.2) sshkey (2.0.0) themes_for_rails (0.5.1) therubyracer (0.12.3) thor (1.1.0) thread_safe (0.3.6) tilt (2.0.9) tzinfo (1.2.9) uglifier (2.7.2) websocket-driver (0.7.3) websocket-extensions (0.1.5) xpath (2.1.0) </pre> API ruby and gems: <pre> api.ce8i5:/tmp# ruby --version ruby 2.5.1p57 (2018-03-29 revision 63029) [x86_64-linux-gnu] </pre> <pre> api.ce8i5:/var/www/arvados-api/current# bundle exec gem list *** LOCAL GEMS *** actioncable (5.2.4.5) actionmailer (5.2.4.5) actionpack (5.2.4.5) actionview (5.2.4.5) activejob (5.2.4.5) activemodel (5.2.4.5) activerecord (5.2.4.5) activestorage (5.2.4.5) activesupport (5.2.4.5) acts_as_api (1.0.1) addressable (2.7.0) andand (1.3.3) arel (9.0.0) arvados (1.5.0.pre20200114202620) arvados-google-api-client (0.8.7.4) autoparse (0.3.3) bootsnap (1.4.7) builder (3.2.4) bundler (1.17.3) byebug (11.0.1) capistrano (2.15.9) concurrent-ruby (1.1.8) crass (1.0.6) erubi (1.10.0) execjs (2.7.0) extlib (0.9.16) factory_bot (5.0.2) factory_bot_rails (5.0.1) faraday (0.15.4) ffi (1.9.25) globalid (0.4.2) googleauth (0.9.0) hashie (3.6.0) highline (2.0.1) httpclient (2.8.3) i18n (0.9.5) jquery-rails (4.3.3) json (2.3.0) jwt (1.5.6) launchy (2.4.3) libv8 (3.16.14.19 x86_64-linux) listen (3.2.1) lograge (0.10.0) logstash-event (1.2.02) loofah (2.9.0) mail (2.7.1) marcel (0.3.3) memoist (0.16.2) metaclass (0.0.4) method_source (1.0.0) mimemagic (0.3.8) mini_mime (1.0.2) mini_portile2 (2.5.1) minitest (5.10.3) mocha (1.8.0) msgpack (1.3.3) multi_json (1.14.1) multi_xml (0.6.0) multipart-post (2.1.1) net-scp (2.0.0) net-sftp (2.1.2) net-ssh (5.2.0) net-ssh-gateway (2.0.0) nio4r (2.5.7) nokogiri (1.11.5 x86_64-linux) oauth2 (1.4.1) oj (3.9.2) omniauth (1.4.3) omniauth-oauth2 (1.5.0) optimist (3.0.0) os (1.0.1) passenger (6.0.2) pg (1.1.4) power_assert (1.1.4) public_suffix (4.0.3) racc (1.5.2) rack (2.2.3) rack-test (1.1.0) rails (5.2.4.5) rails-controller-testing (1.0.4) rails-dom-testing (2.0.3) rails-html-sanitizer (1.3.0) rails-observers (0.1.5) rails-perftest (0.0.7) railties (5.2.4.5) rake (13.0.3) rb-fsevent (0.10.3) rb-inotify (0.9.10) ref (2.0.0) request_store (1.4.1) responders (2.4.1) retriable (1.4.1) ruby-prof (0.15.9) rvm-capistrano (1.5.6) safe_yaml (1.0.5) sass (3.5.5) sass-listen (4.0.0) sass-rails (5.0.7) signet (0.11.0) simplecov (0.7.1) simplecov-html (0.7.1) simplecov-rcov (0.2.3) sprockets (3.7.2) sprockets-rails (3.2.2) sshkey (2.0.0) test-unit (3.3.1) themes_for_rails (0.5.1) therubyracer (0.12.3) thor (1.1.0) thread_safe (0.3.6) tilt (2.0.8) tzinfo (1.2.9) uglifier (2.7.2) websocket-driver (0.7.3) websocket-extensions (0.1.5) </pre>