Idea #18100
Updated by Peter Amstutz over 2 years ago
The clinical user process: # * Create patient record, provide default anonymized id ** Patient data is imported from Redcap ahead of time (separate batch process) id should be padded to 6 (?) places with zeros # Clinician decides * Enter biopsy information * Enter sample information (hasn’t been sequenced yet) (mostly done) ** Sample info (patient id) ** Collection date ** Tissue type ** Time point ** other stuff (check other SOW) ** Option to associate with a biopsy batch id * Information will be sent for copied to a redcap submission that goes to the sequencing core # Navigate ** TBD, might submit from browser using redcap.js, maybe have a "submit to redcap" button that copies data entered into Arvados to redcap submission. Also * When creating the initial study, ability to set patient / biopsy # Add each biopsy sample (DNA tumor / DNA normal / RNA) id prefix, store it as a property of the study project, when suggesting a patient id, use prefix from study to which the patient is being added.