Story #18100

Updated by Peter Amstutz about 1 month ago

The clinical user process:

# * Create patient record, provide default anonymized id
Patient data is imported from Redcap ahead of time (separate batch process) id should be padded to 6 (?) places with zeros
# Clinician decides * Enter biopsy information
* Enter sample information (hasn’t been sequenced yet) (mostly done)
** Sample info (patient id)
** Collection date
** Tissue type
** Time point
** other stuff (check other SOW)
** Option to associate with
a biopsy batch id
* Information
will be sent for copied to a redcap submission that goes to the sequencing core
# Navigate ** TBD, might submit from browser using redcap.js, maybe have a "submit to redcap" button that copies data entered into Arvados to redcap submission.


* When creating the initial study, ability to set
patient / biopsy
# Add each biopsy sample (DNA tumor / DNA normal / RNA)
id prefix, store it as a property of the study project, when suggesting a patient id, use prefix from study to which the patient is being added.