Bug #18285
Updated by Peter Amstutz over 2 years ago
peteramstutz@shell:~/arvados-tutorial/WGS-processing$ arvados-cwl-runner --project-uuid=pirca-j7d0g-n2fc6tjau3qa25z --no-wait cwl/w
gs-processing-wf.cwl yml/wgs-processing-wf-chr19.yml
INFO /usr/bin/arvados-cwl-runner 2.3.0rc3, arvados-python-client 2.3.0rc3, cwltool 3.1.20211020155521
INFO Resolved 'cwl/wgs-processing-wf.cwl' to 'file:///data/home/peteramstutz/arvados-tutorial/WGS-processing/cwl/wgs-processing-wf.
cwl'
INFO cwl/helper/bwamem-samtools-view.cwl:11:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/gather-array-vcf.cwl:15:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/gatk-applyBSQR-with-interval.cwl:10:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/gatk-baserecalibrator-with-interval.cwl:10:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/gatk-haplotypecaller-with-interval.cwl:10:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/gatk-selectvariants.cwl:10:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/gatk-splitintervals.cwl:10:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/mark-duplicates.cwl:13:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/samtools-index.cwl:13:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
...
These warnings should not be printed.