Activity

From 04/24/2017 to 05/23/2017

Today

07:53 pm Revision 72a4000d (arvados): 11543: Upload tool dependencies into single collection. Add test fo...
Peter Amstutz
07:53 pm Revision f60885ad (arvados): 11543: Bump version dependency on arvados-python-client.
Peter Amstutz
07:52 pm Revision df6578e9 (arvados): Merge branch '11543-uploadfile-collection' refs #11543
Peter Amstutz
07:25 pm Revision 8316594b (arvados): 11543: Upload tool dependencies into single collection. Add test fo...
Peter Amstutz
07:22 pm Revision 4a1df4f3 (arvados): 11543: arvados.command.run.uploadfiles takes optional Collection to ...
Peter Amstutz
07:08 pm Revision 81b0d721 (arvados): Merge branch 'master' into 9587-wb-trash-tab
Radhika Chippada
07:06 pm Revision 6898695e (arvados): 9587: trash tab
Radhika Chippada
06:02 pm Revision 381f8ef7 (arvados): 11543: Add test for collection per tool
Peter Amstutz
05:47 pm Revision c4d82e42 (arvados): 11543: Upload tool dependencies into single collection. Fix tests.
Peter Amstutz

05/22/2017

08:46 pm Revision 26c14294 (arvados): Change statfile in run.py to raise exception when a reference file i...
Jiayong Li
08:13 pm Revision 8645888f (arvados): 11100: Update/add tests for --intermediate-output-ttl
Peter Amstutz
06:32 pm Revision 43dbdec9 (arvados): 11100: Implement & document arv:IntermediateOutput hint.
Peter Amstutz
05:06 pm Revision dd584702 (arvados): 11100: Propagate through to runner. Use intermediate_output_ttl con...
Peter Amstutz
04:51 pm Revision 67fbf00f (arvados): 11100: a-c-r sets output_ttl and deletes intermediate collections on...
Peter Amstutz
03:41 pm Revision 2e83bfa0 (arvados): 11501: Fix some tests when trying to use the walltime method on show...
Lucas Di Pentima
03:40 pm Revision ccc2ef47 (arvados): 11501: Improved test name
Lucas Di Pentima
03:10 pm Revision 8045ed8a (arvados): Merge branch '11369-crunchv2-notes' refs #11369
Peter Amstutz
02:57 pm Revision 89bf2019 (arvados): 11369: Add migration notes about crunchv1-to-crunchv2
Peter Amstutz

05/21/2017

06:33 pm Revision b22ff624 (arvados): Merge branch '11720-govendor'
closes #11720 Tom Clegg

05/19/2017

11:36 pm Revision a9b15a2f (arvados): Merge branch '11590-log-reuse'
closes #11590 Tom Clegg
11:20 pm Revision 25fb9f53 (arvados): 9005: Skip starting unused http server in handler tests.
Tom Clegg
11:20 pm Revision 57fa190e (arvados): 9005: Add connection leak test.
Tom Clegg
11:17 pm Revision 138eedbe (arvados): Merge branch '9005-disable-keepalive'
refs #9005
refs #11726
refs #11729
Tom Clegg
11:16 pm Revision 83b73a47 (arvados): 9005: 11726: 11729: Disable http keepalive.
The previous workaround for #9005 did not account for the prefetch
feature: if a goroutine is using the HTTP client t...
Tom Clegg
10:07 pm Revision cee8f888 (arvados): 11501: A work unit running time with children was only computed calc...
childs, so if a work unit child has more children, its running time could differ. Lucas Di Pentima
09:55 pm Revision 820cd602 (arvados): 9587: project#Trash tab displays trashed collections
Radhika Chippada
08:32 pm Revision 695dee19 (arvados): 9005: Skip starting unused http server in handler tests.
Tom Clegg
08:23 pm Revision 303424c3 (arvados): Merge branch '9005-conn-leak'
refs #9005 Tom Clegg
08:06 pm Revision cad24bba (arvados): 9005: Fix missing error checks.
Tom Clegg
08:06 pm Revision 1e7d0d5f (arvados): 9005: Fix missing Close().
Tom Clegg
07:55 pm Revision 1eb8881a (arvados): 9005: Fix missing error checks.
Tom Clegg
07:55 pm Revision ccf1048d (arvados): 9005: Fix missing Close().
Tom Clegg
07:40 pm Revision 9b949e31 (arvados): Merge branch 'master' into 9587-wb-trash-tab
Radhika Chippada
07:34 pm Revision 49a9c33e (arvados): closes #11710
Merge branch '11710-container-request-show-perf' Radhika Chippada
07:34 pm Revision fe746755 (arvados): 11710: fix typo in finding children
Radhika Chippada
07:34 pm Revision d956fd4f (arvados): 11710: preload / batch retrieval of children of a container_work_unit
Radhika Chippada
07:34 pm Revision 642e5979 (arvados): 11710: fetching requesting containers
Radhika Chippada
07:05 pm Revision 23721f23 (arvados): 9005: Skip starting unused http server in handler tests.
Tom Clegg
06:30 pm Revision d7e956d1 (arvados): 11710: fix typo in finding children
Radhika Chippada
05:47 pm Revision dfe5c5a6 (arvados): 9005: Remove debug printf.
Tom Clegg
03:19 pm Revision 38a5c3e2 (arvados): Merge branch 'master' into 11710-container-request-show-perf
Radhika Chippada

05/18/2017

09:25 pm Revision d95ccc6b (arvados): 11590: Dry up log_reuse_info() calls.
Tom Clegg
08:10 pm Revision 35f06a3e (arvados): Merge branch 'master' into 9587-wb-trash-tab
Radhika Chippada
07:46 pm Revision c182087b (arvados): refs #9587
Merge branch '9587-include-trash-in-group-contents' Radhika Chippada
07:45 pm Revision 8ac17750 (arvados): 9587: add support for include_trash in groups_controller -> contents...
Radhika Chippada
07:38 pm Revision abdebdb1 (arvados): 11710: fetching requesting containers
Radhika Chippada
06:53 pm Revision 02d1074b (arvados): 11590: Add container logging tests.
Tom Clegg
06:45 pm Revision d121e087 (arvados): Merge branch '11644-mounts-api'
closes #11644 Tom Clegg
05:26 pm Revision 37003688 (arvados): 11644: Add DeviceID() to Volume interface.
Tom Clegg
05:22 pm Revision d77b362f (arvados): 11644: Unify block-index handlers. Move prefix arg to query string.
Tom Clegg
05:05 pm Revision 627fbeb0 (arvados): 11590: Log container reuse decisions.
Tom Clegg
03:42 pm Revision 55173b4f (arvados): 11710: preload / batch retrieval of children of a container_work_unit
Radhika Chippada
02:26 pm Revision df55660f (arvados): Merge branch '11590-log-reuse'
refs #11590 Tom Clegg
02:26 pm Revision 84906c71 (arvados): 11590: Clarify "job state" condition in log message.
Tom Clegg
02:21 pm Revision 865d1b22 (arvados): 11720: Add vendor/.gitignore.
Tom Clegg
01:47 am Revision 461b3f5a (arvados): 9587: add support for include_trash in groups_controller -> contents...
Radhika Chippada

05/17/2017

09:07 pm Revision b1b7a0be (arvados): 11720: Update Go dependencies.
Tom Clegg
08:48 pm Revision 37470b03 (arvados): 11720: Merge branch 'master' into 11720-govendor
Tom Clegg
08:47 pm Revision b3f88934 (arvados): Merge branch '11546-fast-lock'
closes #11546 Tom Clegg
07:26 pm Revision 513b7af1 (arvados): 11720: Control dependencies with govendor.
Tom Clegg
06:40 pm Revision f3c054cb (arvados): 11720: Control dependencies with govendor.
Tom Clegg
06:29 pm Revision a0431de2 (arvados): Merge branch 'master' into 9587-wb-trash-tab
Radhika Chippada
06:28 pm Revision 6e5079ff (arvados): closes #11580
Merge branch '11580-container-requests' Radhika Chippada
06:28 pm Revision 78390940 (arvados): 11546: Wrap lock/unlock in transactions.
Tom Clegg
06:28 pm Revision e9481fd0 (arvados): 11580: preload containers
Radhika Chippada
06:28 pm Revision 80407a6b (arvados): 11580: add container_requests index page
Radhika Chippada
05:51 pm Revision fbc576b7 (arvados): 11546: Avoid loading/saving non-essential fields in /arvados/v1/cont...
Tom Clegg
05:50 pm Revision 867c69d1 (arvados): Merge branch '11714-crunch-run-cgroup-parent' closes #11714
Peter Amstutz
05:08 pm Revision 7a4bee52 (arvados): 11714: Set CgroupParent under Resources because setting Cgroup in Ho...
doesn't work. Peter Amstutz
05:08 pm Revision f0e917d2 (arvados): Merge branch '11718-crunch-run-docker-wait' closes #11718
Peter Amstutz
04:54 pm Revision 1e5f697d (arvados): 11580: cleanup test to remove unnecessary test
Radhika Chippada
03:07 pm Revision 8347bb8e (arvados): 11714: Set CgroupParent under Resources because setting Cgroup in Ho...
doesn't work. Peter Amstutz
03:04 pm Revision 9d33e0c4 (arvados): 11718: Update crunch-run for docker client API change in ContainerWa...
Peter Amstutz
02:49 pm Revision f3d300ce (arvados): 11546: Avoid loading/saving non-essential fields in /arvados/v1/cont...
Tom Clegg
02:43 pm Revision 7a02915c (arvados): 11546: Avoid loading/saving non-essential fields in /arvados/v1/cont...
Tom Clegg
02:24 pm Revision bbb8b8ee (arvados): 11546: Avoid loading/saving non-essential fields in /arvados/v1/cont...
Tom Clegg
02:12 pm Revision dfc18fd7 (arvados): 11546: Avoid loading/saving non-essential fields in /arvados/v1/cont...
Tom Clegg
01:47 pm Revision 68089478 (arvados): 11580: @limit on container_requests index page
Radhika Chippada

05/16/2017

07:33 pm Revision 701b7fa8 (arvados): 11580: preload containers
Radhika Chippada
05:31 pm Revision 42f5f3a2 (arvados): 11644: Test fields in /mounts response.
Tom Clegg
05:23 pm Revision 9eff4af0 (arvados): 11644: Ensure generated UUIDs are always 27 chars.
Tom Clegg
05:22 pm Revision c4b5194c (arvados): 11644: Add volume replication level to /mounts response.
Tom Clegg
05:11 pm Revision 8cc51c76 (arvados): 11644: Replace linear search with map for looking up mounts by UUID.
Tom Clegg
05:03 pm Revision 74544f43 (arvados): 11644: Test non-empty MountUUID in trash list.
Tom Clegg
04:48 pm Revision 38de76ce (arvados): 11644: Add pull-to-mount-UUID test. Tidy up pull worker and tests.
Tom Clegg
04:37 pm Revision 027f1112 (arvados): Merge branch 'master' into 11580-container-requests
Radhika Chippada
04:36 pm Revision ac958c15 (arvados): 11580: status label display
Radhika Chippada
04:15 pm Revision 06f2f3f3 (arvados): 11580: test the /container_requests page
Radhika Chippada
02:52 pm Revision f26f70d0 (arvados): Merge branch '11693-crunch2-output-symlinks' closes #11693
Peter Amstutz
02:38 pm Revision aceb2d1e (arvados): 11693: Only check collection mounts when determining whether to call
getCollectionManifestForPath to merge files into output collection. Remove
redundant assignment of outputSuffix.
Peter Amstutz
02:32 pm Revision f5fbc488 (arvados): Merge branch '10111-collection-labels'
Closes #10111 Lucas Di Pentima
02:32 pm Revision b9b4502b (arvados): 10111: Merge branch 'master' into 10111-collection-labels
Lucas Di Pentima
01:12 pm Revision a340487a (arvados): 11693: Detect and error on symlinks pointing to locations outside th...
Peter Amstutz
12:09 am Revision a4218e78 (arvados): 11580: add container_requests index page
Radhika Chippada

05/15/2017

11:50 pm Revision 1d45ac3d (arvados): 11580: preload container / container_request objects of the parent c...
Radhika Chippada
09:35 pm Revision 50c67a3e (arvados): 11644: Accept index/pull/trash requests for a specific mount.
Tom Clegg
08:58 pm Revision 94b92f07 (arvados): 11693: Add test that error capturing output results in cancelled con...
Peter Amstutz
08:25 pm Revision eee2c470 (arvados): 11693: Add test cases for symlinks to directories and symlinks insid...
Peter Amstutz
08:08 pm Revision 795bf007 (arvados): 10111: Moved the api request related code to the controller.
Lucas Di Pentima
07:52 pm Revision 34f9129a (arvados): 11693: Add tests.
Peter Amstutz
06:06 pm Revision 1903e0e2 (arvados): 11693: Dereference symlinks to input files and add incorporate them ...
Peter Amstutz
02:19 pm Revision bbe86c4a (arvados): 11693: Mark container as cancelled if there is an error during final...
Peter Amstutz
02:11 pm Revision 953a9210 (arvados): 11644: Use storage account and bucket name as DeviceID for Azure vol...
Tom Clegg
02:10 pm Revision 209dbf15 (arvados): 11644: Use endpoint and bucket name as DeviceID for S3 volumes.
Tom Clegg
05:59 am Revision 61a88734 (arvados): 11644: Use filesystem UUID and path as DeviceID for local disk volumes.
Tom Clegg

05/12/2017

09:21 pm Revision 86907851 (arvados): 11644: Add /mounts endpoint using random mount UUIDs assigned at run...
Tom Clegg
02:45 pm Revision ed56c267 (arvados): Merge branch '11590-log-reuse'
refs #11590 Tom Clegg
02:34 pm Revision 0d5962b7 (arvados): 11590: Reword log messages.
Tom Clegg
02:29 pm Revision 2aaef36d (arvados): Merge branch '11647-no-perm-tokens'
Refs #11647 Lucas Di Pentima
02:28 pm Revision 8794708d (arvados): 11647: Merge branch 'master' into 11647-no-perm-tokens
Lucas Di Pentima
02:00 pm Revision c70fbca1 (arvados): 11647: When repacking small blocks into big ones, commit them synchr...
Lucas Di Pentima
01:57 pm Revision 86c4a20b (arvados): 11647: Test proving that when small blocks get repacked and the resu...
committed asynchronously, it doesn't get the permission token on the manifest. Lucas Di Pentima
01:03 pm Revision 3fbba807 (arvados): 10645: ApplicationController.helpers.object_for_dataclass not access...
Radhika Chippada

05/11/2017

09:27 pm Revision 75953fd3 (arvados): Merge branch '11681-str-newstr' refs #11681
Peter Amstutz
09:25 pm Revision 8c9b3ded (arvados): 11681: Return native str type from Collection.portable_data_hash() ...
Peter Amstutz
08:35 pm Revision 93e4548d (arvados): Merge branch '11681-str-newstr'
refs #11681 Tom Clegg
07:37 pm Revision 9cd1bd27 (arvados): 11681: Return native str type from KeepLocator.__str__() and Collect...
Tom Clegg
04:55 pm Revision 8cf32f39 (arvados): Merge branch 'master' into 10645-cr-display-perf
Radhika Chippada
04:54 pm Revision 7f1e7f79 (arvados): closes #10645
Merge branch '10645-cr-mounts-display' Radhika Chippada
04:54 pm Revision bc65e5b9 (arvados): Merge branch 'master' into 10645-cr-mounts-display
Radhika Chippada
03:38 pm Revision fb5d2792 (arvados): 11590: Add "reuse jobs even if conflicting outputs exist" and "log r...
Tom Clegg
03:00 pm Revision 7bb1d40e (arvados): Merge branch '11369-cwl-keepcache-ram' refs #11369
Peter Amstutz
02:19 pm Revision a309f8c5 (arvados): Merge branch '11626-crunch2-log-slurm-errors' closes #11626
Peter Amstutz
02:19 pm Revision 3fa8a8a4 (arvados): 11626: Fix log.Printf -> log.Print
Peter Amstutz
12:54 pm Revision 97d759d7 (arvados): 10645: display collection link with disposition. preload mount and c...
Radhika Chippada
12:44 pm Revision 17432c8e (arvados): 10645: link_to locator with disposition
Radhika Chippada
01:10 am Revision a795e5e0 (arvados): Be smarter about how we handle packages built in previous runs.
This commit fixes a bug: packages that were built but failed testing
will no longer be uploaded later, when a subsequ...
Ward Vandewege

05/10/2017

11:53 pm Revision 94054d9f (arvados): Merge branch 'master' into 10645-cr-display-perf
Radhika Chippada
09:46 pm Revision f29a53da (arvados): 11669: Avoid 0.5 redundant scancel() when ctr disappears from squeue...
Tom Clegg
09:09 pm Revision 02b75a37 (arvados): The Workbench package has a build-time dependency on tzdata for
Ubuntu1604, which is not included in the default upstream docker image.
Add it to our list of dependencies.
Also twe...
Ward Vandewege
08:21 pm Revision 411109e1 (arvados): Fix Workbench package dependency.
No issue # Ward Vandewege
07:11 pm Revision 8b6d154d (arvados): Our API server and Workbench packages depend on 2 gems that compile
native objects, which require g++ to build them: event-machine and
therubyracer. For our debian-based distros, that p...
Ward Vandewege
06:58 pm Revision 303d374c (arvados): 11369: Add keep_cache to base RAM request.
Peter Amstutz
06:50 pm Revision 6ad31a32 (arvados): Merge branch '10827-checker-cwltool-update' refs #10827
Peter Amstutz
06:48 pm Revision 209c2259 (arvados): 10827: Bump cwltool & schema salad dependency.
Peter Amstutz
04:59 pm Revision c7a992a2 (arvados): 10827: Bump cwltool & schema salad dependency.
Peter Amstutz
04:56 pm Revision a5c53dce (arvados): closes #10112
Merge branch '10112-workflow-show' Radhika Chippada
04:55 pm Revision 62a0bbe9 (arvados): Merge branch 'master' into 10112-workflow-show
Radhika Chippada
04:47 pm Revision 776885d3 (arvados): 10645: preload child crs and they containers
Radhika Chippada
03:45 pm Revision a7bd5fa6 (arvados): 10112: preload collections
Radhika Chippada
03:43 pm Revision ddbe4fd3 (arvados): 10827: Don't track file mutations.
Peter Amstutz
03:31 pm Revision 7162967c (arvados): 10827: Fix imports
Peter Amstutz
03:16 pm Revision 32d28ed5 (arvados): 10827: Bump cwltool & schema salad dependency.
Peter Amstutz
03:08 pm Revision 4644e14f (arvados): 10827: Add --validate, --print-dot and --enable-dev options (pass th...
existing cwltool functionality). Peter Amstutz
02:23 pm Revision c22bd855 (arvados): Merge branch '11629-groups-contents-memory'
refs #11629
refs #11458
Tom Clegg
02:22 pm Revision 96b33e5a (arvados): 11629: Fix ambiguous column reference.
Tom Clegg

05/09/2017

08:37 pm Revision 94568859 (arvados): Merge branch '11634-bundler-cache'
closes #11634 Tom Clegg
08:33 pm Revision ba917d72 (arvados): Merge branch '11629-groups-contents-memory'
closes #11629 Tom Clegg
08:33 pm Revision f8675ad4 (arvados): 11626: Log sbatch errors where the user can see them. Fix tests so ...
Peter Amstutz
08:08 pm Revision 40ce7856 (arvados): Add libgnutls28-dev and python3-dev to install package list to satisfy
run-tests.sh dependencies. refs #11308 Peter Amstutz
07:49 pm Revision 4bc2f36b (arvados): Merge branch '11308-collection-keys'
refs #11308 Tom Clegg
07:31 pm Revision 47f29d75 (arvados): 11308: Fix modes not tested in test case.
Tom Clegg
07:30 pm Revision 8e0303a5 (arvados): 11308: collection.keys() supports indexing for python2 callers.
Tom Clegg
03:29 pm Revision 4c1d34ee (arvados): 10112: use show_text_with_locators partial to display the various at...
Radhika Chippada
02:35 pm Revision 79aeb557 (arvados): Merge branch 'master' into 10112-workflow-show
Radhika Chippada
02:31 pm Revision 8ee2f839 (arvados): refs #10645
Merge branch '10645-cr-mounts-display' Radhika Chippada
02:28 pm Revision 537ff1df (arvados): 10645: added comment
Radhika Chippada
11:35 am Revision 4e32a5d0 (arvados): Merge branch 'master' into 10645-cr-mounts-display
Radhika Chippada
11:33 am Revision 2c60e150 (arvados): 10645: refactor the display of text with locators into a partial
Radhika Chippada
01:58 am Revision dd69c4ba (arvados): 10645: collection links in command
Radhika Chippada
01:21 am Revision 575b2f04 (arvados): 10645: regexp for keep_locator_in_json format
Radhika Chippada

05/08/2017

10:56 pm Revision 5a649613 (arvados): 10645: test update
Radhika Chippada
10:43 pm Revision e49882e5 (arvados): 10645: display PDHs in command as clickable collections.
Radhika Chippada
09:34 pm Revision 78408743 (arvados): 10645: display keep locator in mounts as pdh/file_name
Radhika Chippada
08:04 pm Revision 08e9c6af (arvados): Merge branch '11638-limit-conns'
closes #11638 Tom Clegg
08:04 pm Revision c4a0f7a7 (arvados): 11638: Log a warning if Postgres pool size is unlimited.
Tom Clegg
07:14 pm Revision 75a76c08 (arvados): 10645: Tweak so that left column is col-md-6 (instead of col-md-5). ...
full width part to be col-md-12. Move "priority" back to right hand column. Peter Amstutz
07:02 pm Revision 3652f3ed (arvados): 11638: Add PostgresPool config option, and default application_name
Tom Clegg
06:21 pm Revision 4cacfe7a (arvados): 11629: Apply memory limits to job/pipeline "components" fields.
Tom Clegg
06:19 pm Revision 541d4760 (arvados): 9587: Trash tab added to projects controller.
Lucas Di Pentima
06:17 pm Revision 3f285d4c (arvados): 11629: Fix items_available in groups#contents response.
Tom Clegg
05:59 pm Revision aa6a63fb (arvados): 10645: L&F improvements
Radhika Chippada
04:42 pm Revision ee434dea (arvados): Merge branch 'master' into 10645-cr-mounts-display
Radhika Chippada
04:06 pm Revision 9bf79049 (arvados): Merge branch '11308-python3'
refs #11308 Tom Clegg
04:05 pm Revision 8976780c (arvados): 11308: Merge branch 'master' into 11308-python3
Tom Clegg
02:52 pm Revision b29ca38e (arvados): 10111: When dealing with output collection nodes, render the specifi...
Lucas Di Pentima
02:31 pm Revision b20770d7 (arvados): 10111: Refactored the graph creation code to minimize the amount of ...
Lucas Di Pentima
02:07 pm Revision f21a495d (arvados): 11634: Prevent bundler from trying to use/update system gem cache.
Tom Clegg
01:59 pm Revision 3b11d2b5 (arvados): 11634: Fix whitespace.
Tom Clegg
01:18 pm Revision b58953e9 (arvados): 10645: improve location regex usage
Radhika Chippada

05/05/2017

09:11 pm Revision 26d7e180 (arvados): 11626: Don't run scancel if the job is already gone from the queue. ...
Peter Amstutz
07:35 pm Revision d4eead35 (arvados): 10645: table width 100%
Radhika Chippada
07:30 pm Revision cb109bfd (arvados): 11629: Limit database reads for all list responses, not just index.
Tom Clegg
07:30 pm Revision 74d98b5f (arvados): 10112: add Definition tab to workflow page
Radhika Chippada
05:38 pm Revision 5cd02331 (arvados): Merge branch 'master' into 10112-workflow-show
Radhika Chippada
05:30 pm Revision 7ea93a3e (arvados): Merge branch 'master' into 10645-cr-mounts-display
Radhika Chippada
05:29 pm Revision 50a1f829 (arvados): 10645: corrections to test fixture
Radhika Chippada
04:05 pm Revision 3b4325c2 (arvados): closes #8019
Merge branch '8019-crunchrun-log-throttle' Radhika Chippada
04:02 pm Revision 007d2919 (arvados): Merge branch 'master' into 8019-crunchrun-log-throttle
Radhika Chippada
03:54 pm Revision f389a552 (arvados): 8019: Make flush channel buffered again (because we want to be able ...
Fix "> crunchLogBytesPerEvent" to ">= crunchLogBytesPerEvent" for consistency. Peter Amstutz
03:12 pm Revision d23bc7c1 (arvados): 10645: small style updates
Radhika Chippada
02:43 pm Revision 4259263d (arvados): 10111: On output collections, name the collection node after the out...
Lucas Di Pentima
01:49 pm Revision e0182378 (arvados): 10111: Fix integration test
Lucas Di Pentima
01:44 pm Revision 1bfda34f (arvados): Merge branch 'master' into 10645-cr-mounts-display
Radhika Chippada
01:32 am Revision 4218f742 (arvados): Merge branch 'master' into 10645-cr-mounts-display
Radhika Chippada
01:31 am Revision 2516e999 (arvados): 10645: mount inputs display
Radhika Chippada

05/04/2017

09:37 pm Revision 39755f76 (arvados): 10111: Better labels on collection on the provenance graph.
Lucas Di Pentima
06:30 pm Revision 6fd54bd2 (arvados): Merge branch '10111-cr-prov-regression-fixes'
Refs #10111 Lucas Di Pentima
06:26 pm Revision e42bf966 (arvados): 10111: Flipped arrow between the cr and its childs cr.
Lucas Di Pentima
05:32 pm Revision e4f03346 (arvados): 8019: uncomment the test statement
Radhika Chippada
05:17 pm Revision a4a8d41f (arvados): 10111: Only add cr input collections by PDH.
Lucas Di Pentima
05:02 pm Revision f10431fe (arvados): 8019: Use tl.stopping channel instead of tl.flush to signal Close. U...
Tom Clegg
03:42 pm Revision 11208178 (arvados): 10111: Skip log outputs from the provenance graph.
Container request's outputs are now added to the graph by their PDHs so that they connect with the CR childs inputs. Lucas Di Pentima
03:16 pm Revision ffb304af (arvados): 11308: Merge branch 'master' into 11308-python3
Tom Clegg
03:09 pm Revision 5ca261ee (arvados): 11308: Fix bytes vs. strings from recent merge.
Tom Clegg
01:01 am Revision dd0786de (arvados): We stopped building packages for Ubuntu 12.04, it is now officially ...
No issue # Ward Vandewege

05/03/2017

09:56 pm Revision 8ed7b6dd (arvados): closes #11522
Merge branch '11522-remove-user-storage-report-page' Radhika Chippada
09:08 pm Revision d66c9f93 (arvados): Merge branch 'master' into 10112-workflow-show
Radhika Chippada
08:55 pm Revision f682de56 (arvados): closes #11250
Merge branch '11250-container-state-display' Radhika Chippada
08:37 pm Revision 787e77b3 (arvados): 11522: remove link to users storage page in users activity page.
Radhika Chippada
08:20 pm Revision 8dd7e323 (arvados): 11250: when a container's priority is zero and in Queued state, show...
Radhika Chippada
06:37 pm Revision c3aa32a8 (arvados): 10645: rename file
Radhika Chippada
06:24 pm Revision 8de338d1 (arvados): Merge branch 'master' into 10645-cr-mounts-display
Radhika Chippada
06:20 pm Revision 3c4b14cf (arvados): Merge branch '11369-log-sizes' refs #11369
Peter Amstutz
06:15 pm Revision 1586823b (arvados): Merge branch 'master' into 10112-workflow-show
Radhika Chippada
04:59 pm Revision c64d7e1d (arvados): Merge branch '11469-volume-tmp' refs #11469
Peter Amstutz
04:48 pm Revision 1885991d (arvados): Merge branch '11369-dispatch-mem' refs #11369
Peter Amstutz
04:48 pm Revision 00175738 (arvados): Merge branch '11369-cwl-crunch2-capacity' refs #11369
Peter Amstutz
02:49 pm Revision 65616466 (arvados): 11469: Add test for changed tmp mounting behavior.
Peter Amstutz
02:20 pm Revision e24a892b (arvados): Merge branch '11606-rails4-no-munge'
closes #11606 Tom Clegg
02:20 pm Revision fa0ccc4c (arvados): 11308: Stop test suite if api etc. cannot be started.
Tom Clegg
01:52 pm Revision 35dde402 (arvados): 11469: All {kind: tmp} mounts set up under host tempdir, don't try t...
Docker volumes. Peter Amstutz
01:41 pm Revision 3f8f2a9b (arvados): 11369: Fix tests. Tweak test fixture to include a mounts entry with...
Peter Amstutz
01:35 pm Revision fe29b56a (arvados): 11369: Log node sizes at startup. Fix setting of scratch disk size.
Peter Amstutz
04:24 am Revision 43a6204d (arvados): 10645: add test for container_request display with input mounts
Radhika Chippada
03:17 am Revision 7f9839be (arvados): 11369: Containers API: Add capacity to tmp and output mounts. Also ...
Peter Amstutz
03:13 am Revision 2bfa9d38 (arvados): 11369: Containers API: Add capacity to tmp and output mounts. Also ...
Peter Amstutz
02:53 am Revision 10441f4b (arvados): 11369: Fix tests. Tweak test fixture to include a mounts entry with...
Peter Amstutz
02:21 am Revision 9350a056 (arvados): 11369: RAM request includes keep cache RAM. Add request for temp disk.
Peter Amstutz
01:59 am Revision dd908b53 (arvados): 11369: Log node sizes at startup. Fix setting of scratch disk size.
Peter Amstutz
01:05 am Revision 23825c0b (arvados): Merge branch 'master' into 10645-cr-mounts-display
Radhika Chippada

05/02/2017

08:03 pm Revision e54bce82 (arvados): 8019: need to check and write log if things are closing down
Radhika Chippada
05:02 pm Revision 607fe087 (arvados): 11308: Merge branch 'master' into 11308-python3
Conflicts:
sdk/python/arvados/arvfile.py
sdk/python/arvados/commands/put.py
sdk/python/tests/test_collections.py
Tom Clegg
03:44 pm Revision fca805a1 (arvados): Merge branch '11185-wb-disable-reuse'
Closes #11185 Lucas Di Pentima
03:39 pm Revision 974799e0 (arvados): 11606: Disable deep_munge behavior. Rename test so it runs in test s...
Tom Clegg
03:24 pm Revision 613155d5 (arvados): Merge branch '11579-arvput-follow-symlinks'
Closes #11579 Lucas Di Pentima
02:56 pm Revision be4852ec (arvados): 11185: Merge branch 'master' into 11185-wb-disable-reuse
Lucas Di Pentima
02:55 pm Revision fe45b1b6 (arvados): 11579: Merge branch 'master' into 11579-arvput-follow-symlinks
Lucas Di Pentima
02:52 pm Revision 18f3b51a (arvados): 11579: Added assertion on test to check for file symlinks to be copi...
Don't treat a PathDoesNotExist exception as an abnormal termination, just log the proper error message, and quit. Lucas Di Pentima
01:43 am Revision 6f62739b (arvados): 10645: container request mounts display
Radhika Chippada

05/01/2017

09:05 pm Revision 4d012b23 (arvados): 11579: Removed feature about not uploading a symlinked dir twice.
When using --no-follow-links parameter, symlinked files will be also ignored.
Updated tests.
Lucas Di Pentima
07:58 pm Revision c6452ff3 (arvados): 11185: Removed newly added completed-acr fixture and modified the al...
to be able to use it on the tests.
Change the reset_form() JS function to something more specific to this usage, to a...
Lucas Di Pentima
06:03 pm Revision ed375727 (arvados): Merge branch '10988-document-ubuntu1604-support'
closes #10988 Tom Clegg
06:02 pm Revision 70166077 (arvados): 10988: Remove apt.arvados.org repo priority: we no longer publish/re...
Tom Clegg
06:02 pm Revision fb72bf49 (arvados): 10988: Document our Ubuntu 16.04 support.
Ward Vandewege
05:29 pm Revision 5d00ecb0 (arvados): Merge branch 'master' into origin-8019-crunchrun-log-throttle
Peter Amstutz
04:44 pm Revision d2ebb8fe (arvados): Merge branch '11469-volume-tmp' refs #11469
Peter Amstutz
04:43 pm Revision fea486f9 (arvados): Crunch script doesn't fail in file/directory literals that don't hav...
Peter Amstutz
02:36 pm Revision 8266a4cc (arvados): 11549: Crunch script doesn't fail in file/directory literals that do...
Peter Amstutz
02:02 pm Revision 43d1a5d0 (arvados): 11469: Docker-managed volumes go in "Volumes" not "Binds".
Peter Amstutz

04/28/2017

09:04 pm Revision 059a62b5 (arvados): 11183: In docker-compose test, wait for checks only on head node.
Tom Clegg
07:52 pm Revision 87f40ab7 (arvados): 11183: Fix "just setup" test.
Tom Clegg
07:18 pm Revision d694a717 (arvados): 11185: Addressed several requests:
* Added '...' to 'Re-run' button's title to indicate it will show a dialog.
* Corrected comment.
* Added javascript c...
Lucas Di Pentima
06:50 pm Revision 712968da (arvados): 8019: Rework partial line throttling. Fix sending flush when buffer...
so it does not block. Peter Amstutz
05:39 pm Revision 1522e9dc (arvados): 11183: Rearrange source tree
Tom Clegg
05:12 pm Revision 1883fbbd (arvados): 11183: Add "arvados-admin setup"
Tom Clegg
05:12 pm Revision a328dd7d (arvados): 11183: Start API server
Tom Clegg
05:12 pm Revision 887ca969 (arvados): 11183: Add "setup -wait" flag
Tom Clegg
05:12 pm Revision 957ec5ff (arvados): 11183: Less noise while waiting for health checks.
Tom Clegg
05:12 pm Revision 55466cec (arvados): 11183: Avoid reusing httpclient via vault config to prevent "protoco...
Tom Clegg
05:12 pm Revision ff310f43 (arvados): 11183: Fix setup-already-done check.
Tom Clegg
05:12 pm Revision fb08faf4 (arvados): 11183: More consul setup.
Tom Clegg
04:59 pm Revision e56ae6aa (arvados): Merge branch '11537-keepproxy-loop'
closes #11537 Tom Clegg
03:25 pm Revision 59b27bcb (arvados): 11579: Check if paths exist, raise meaningful exception if not.
Added test for this case. Lucas Di Pentima
02:40 pm Revision e39a7d57 (arvados): Merge branch '11549-cwl-smarter-mounts' closes #11549
Peter Amstutz
02:07 pm Revision 72900c01 (arvados): 11537: Add Via header to proxied keepstore requests.
Propagate keepclient PUT error messages to caller. Tom Clegg
02:07 pm Revision 88a25d41 (arvados): 11537: Add Via header to get/head/post/put responses.
Tom Clegg

04/27/2017

08:55 pm Revision 6a7edde0 (arvados): Merge branch '7709-rails-observers'
refs #7709 Tom Clegg
08:51 pm Revision 41a7f391 (arvados): 7709: Add rails-observers gem so plugins can use it.
Tom Clegg
08:15 pm Revision e289b9ad (arvados): 11579: Explicitly following links on test.
Lucas Di Pentima
08:12 pm Revision 3843210b (arvados): 11579: Tests added.
Lucas Di Pentima
07:51 pm Revision b92089c1 (arvados): 11579: Added symlinked dir traversal as the default behavior.
Added flag to disable this and ignore symlinked dirs: --no-follow-links. Lucas Di Pentima
07:44 pm Revision 3acd5d7f (arvados): 8019: partial line throttling etc
Radhika Chippada
07:24 pm Revision baa1c3db (arvados): 11537: Add Via header to get/head/post/put responses.
Tom Clegg
06:29 pm Revision f7c0c213 (arvados): 11537: Add Via header to get/head/post/put responses.
Tom Clegg
06:24 pm Revision f5f5de0a (arvados): 11549: Fix container requests so it doesn't mount each file individu...
instead mount common collections/subdirectories. Peter Amstutz
06:05 pm Revision e8317521 (arvados): 11549: Test that containers don't mount each file individually, inst...
common collections/subdirectories. Peter Amstutz
05:03 pm Revision e6201e51 (arvados): 11537: Add Via header to proxied keepstore requests.
Propagate keepclient PUT error messages to caller. Tom Clegg
04:59 pm Revision 318c4900 (arvados): Merge branch '7709-api-rails4'
closes #7709 Tom Clegg
04:54 pm Revision f517c989 (arvados): 11579: Test proving the bug: arv-put does not follow symlinks.
Lucas Di Pentima
03:42 pm Revision 65da2332 (arvados): 11185: When re-run, the default behaviour is to copy reuse disabled....
the user to enable reuse.
Updated tests.
Lucas Di Pentima
02:51 pm Revision fb2fd7c8 (arvados): 11537: Add Via header to proxied keepstore requests.
Propagate keepclient PUT error messages to caller. Tom Clegg
01:55 pm Revision 8c948701 (arvados): 11185: Now we only have one "Re-run" button that will give the user ...
Updated test. Lucas Di Pentima

04/26/2017

09:11 pm Revision 8a1a20bc (arvados): 11537: Add Via header to proxied keepstore requests.
Tom Clegg
06:56 pm Revision b075d1be (arvados): Merge branch '10111-cr-provenance-graph'
Closes #10111 Lucas Di Pentima
06:55 pm Revision 8c5f2973 (arvados): 10111: Merge branch 'master' into 10111-cr-provenance-graph
Lucas Di Pentima
06:29 pm Revision edfc619e (arvados): 10111: Replaced graph edges names: cr->child & mounts->input.
Lucas Di Pentima
06:25 pm Revision 90209af8 (arvados): Merge branch '11305-migrate-docker19-doc'
Documentation for the migration process from Docker 1.9 or less to Docker 1.10+
Docker changed the format of the im...
Nico César
04:28 pm Revision 88c241d7 (arvados): 10111: If there is no cwl.input.json object as part of a CR mount li...
Lucas Di Pentima
04:15 pm Revision ac3bafbc (arvados): 10112: add Run button to workflow#show page
Radhika Chippada
03:24 pm Revision 5deec2e7 (arvados-dev): Merge branch 'master' of git.curoverse.com:arvados-dev
Git sync user
03:23 pm Revision 07723cdd (arvados-dev): Remove old tapestry test file, it has been moved to the Tapestry
repository.
No issue #
Ward Vandewege
02:33 pm Revision 137ebf94 (arvados): 7709: Merge branch 'master' into 7709-api-rails4
Tom Clegg
02:03 pm Revision fed8ee00 (arvados): 11185: On re-run without reuse, assign 'false' to CR.use_existing. A...
Lucas Di Pentima
11:56 am Revision 260e85a9 (arvados): 10111: Only include those mounts that are declared on the cwl input ...
Removed trailing spaces. Lucas Di Pentima
02:04 am Revision e7b46691 (arvados): 11185: Added "Re-run without reuse" button to the completed CR page,...
copies the CR modifying the arvados-cwl-runner arguments to avoid container
reuse.
Expanded related test.
Lucas Di Pentima

04/25/2017

08:43 pm Revision c5c09df3 (arvados): 8019: load log throttling config params during NewContainerRunner
Radhika Chippada
07:26 pm Revision 30146198 (arvados): 10111: Added "child" CRs to the graph, and removed container image a...
Lucas Di Pentima
07:05 pm Revision 455f862a (arvados): 8019: rateLimit method signature
Radhika Chippada
06:08 pm Revision 8622b46a (arvados): Merge branch 'master' into 8019-crunchrun-log-throttle
Radhika Chippada
06:06 pm Revision 4344941f (arvados): 8019: load rate limiting config parameters from discovery document o...
Radhika Chippada
05:22 pm Revision 95e2bdda (arvados): Merge branch '11544-bad-collection-id-500'
closes #11544 Tom Clegg
05:01 pm Revision 629557aa (arvados): 11544: Return 404 instead of 500 for malformed collection IDs.
Tom Clegg
03:58 pm Revision f2f8340b (arvados): Merge branch '11507-deleted-bufferblocks' refs #11507
Peter Amstutz
01:37 pm Revision ad7294ed (arvados): 11507: Move repack_writes() method from ArvadosFile to BufferBlock.
Peter Amstutz
05:14 am Revision 3ef580c4 (arvados): 7709: Merge branch 'master' into 7709-api-rails4
Conflicts:
services/api/db/structure.sql
Tom Clegg
03:50 am Revision 4ccbea9e (arvados): 10111: Tests added
Lucas Di Pentima

04/24/2017

09:21 pm Revision 9dabca0e (arvados): 8019: more testing
Radhika Chippada
08:42 pm Revision 6e577058 (arvados): 8019: add tests and address issues identified
Radhika Chippada
08:07 pm Revision c043e133 (arvados): 10111: Merge branch 'master' into 10111-cr-provenance-graph
Lucas Di Pentima
07:30 pm Revision 93c92875 (arvados): 10111: Added provenance graph for container requests.
Lucas Di Pentima
06:57 pm Revision bf5d77ba (arvados): Fix panic in test case (overwriting a locked sync.Mutex with an unlo...
No issue # Tom Clegg
06:05 pm Revision 04bd6b08 (arvados): Merge branch '11517-no-count-logs'
refs #11517 Tom Clegg
06:02 pm Revision 840b855f (arvados): 11517: Add test for count=none.
Tom Clegg
06:00 pm Revision 1220e218 (arvados): 11517: Skip database reset in some workbench unit tests.
Reduces unit test suite time by half. Tom Clegg
05:42 pm Revision 17b80c32 (arvados): 11517: Comment with_count() method
Tom Clegg
05:02 pm Revision 9905d124 (arvados): 11305: added kernel and module dependency for docker migration in doc
refs #11305 Nico César
02:05 pm Revision fd65e0be (arvados): Merge branch 'master' into 8019-crunchrun-log-throttle
Radhika Chippada
02:04 pm Revision 35c25727 (arvados): 11517: Use count=none when retrieving logs.
Tom Clegg
12:43 pm Revision a93d95d8 (arvados): we need the tagged image to do this
Nico César
 

Also available in: Atom