Activity

From 03/01/2017 to 03/30/2017

03/29/2017

09:18 pm Bug #4124: [Crunch] Socket timed out on send/recv operation causes pipeline failure
well i found this from 2016-04-12 :... Nico César
07:58 pm Bug #4124: [Crunch] Socket timed out on send/recv operation causes pipeline failure
Review production cluster logs to see if this specific timeout message has been seen. If not, close this. Otherwise, ... Tom Morris
08:10 pm Task #11392 (New): Review
Tom Morris
08:10 pm Task #11391 (New): Review
Tom Morris
08:09 pm Task #11390 (New): Review
Tom Morris
08:09 pm Task #11389 (New): Review a-c-r changes
Tom Clegg
08:09 pm Task #11388 (New): Review API changes
Tom Clegg
08:08 pm Task #11385 (New): Review
Radhika Chippada
08:07 pm Task #11384 (New): Review
Radhika Chippada
08:05 pm Task #11382 (New): Review
Lucas Di Pentima
08:05 pm Task #11381 (New): Review
Lucas Di Pentima
08:04 pm Task #11379 (New): Review
Tom Clegg
08:03 pm Task #11378 (New): Warn that most users don't want --unmount-all
Tom Clegg
08:03 pm Task #11377 (New): Honor subtype arg
Tom Clegg
08:03 pm Task #11376 (New): Review
Tom Clegg
08:02 pm Task #11375 (New): Review
Tom Clegg
07:49 pm Task #11370 (New): Update cwl runner after API feature is merged
Peter Amstutz
07:40 pm Story #11365: [Workbench] Add lock button for collection display to enable rename & delete
The lock / unlock is at UI level only. For ex: if I unlock, and close the browser and reopen in a new browser, the co... Radhika Chippada
05:46 pm Story #11365 (New): [Workbench] Add lock button for collection display to enable rename & delete
Because renaming or deleting a file changes the portable data hash of a collection, we want to warn the user of the c... Tom Morris
07:35 pm Bug #11283: duplicate key value violates unique constraint "index_nodes_on_slot_number"
We can do better than this in source:services/api/app/models/node.rb... Tom Clegg
07:16 pm Task #11367 (New): Need to pass CWL tests
Peter Amstutz
07:06 pm Story #9132: [Crunch2] crunch-run uses official docker client library
Assigning to Peter to debug / fix any issues with docket client invocations. Thanks. Radhika Chippada
03:11 pm Story #9132: [Crunch2] crunch-run uses official docker client library
Yea, that might be the legitimate exit code. But the CWL test should pass, and it isn't, so it needs further investi... Peter Amstutz
12:57 am Story #9132: [Crunch2] crunch-run uses official docker client library
> I think maybe the return code from ContainerWait is not being interpreted properly
We are just returning what is...
Radhika Chippada
04:11 pm Task #11199 (Resolved): Review 10218-record-node-info
Radhika Chippada
04:10 pm Task #11265 (Resolved): Review branch 3821-collection-file-manage
Radhika Chippada
03:50 pm Story #3821 (Resolved): [Workbench] Delete and rename files in collections
Applied in changeset arvados|commit:2b27132d13fd72f29dbab2297f0d2dc1c110eed1. Radhika Chippada
03:41 pm Story #3821: [Workbench] Delete and rename files in collections
LGTM, please merge. Lucas Di Pentima
03:33 pm Story #3821: [Workbench] Delete and rename files in collections
> Could you update the rest of the routes so that instead of using the “:on => :member” style, use the newer “on: :me... Radhika Chippada
02:33 pm Story #3821: [Workbench] Delete and rename files in collections
Some comments:
* File @apps/workbench/config/routes.rb@:
** Related detail: Could you update the rest of the rout...
Lucas Di Pentima
03:50 pm Story #4594 (Resolved): [Workbench] In the collections page, provide the ability to select indivi...
Applied in changeset arvados|commit:2b27132d13fd72f29dbab2297f0d2dc1c110eed1. Radhika Chippada

03/28/2017

08:29 pm Story #9132: [Crunch2] crunch-run uses official docker client library
I'm running stuff and getting an exit code of "2" when it should be "0". I think maybe the return code from Containe... Peter Amstutz
08:17 pm Task #11353 (New): use arv-mount --unmount-all in crunch-job
Tom Clegg
08:07 pm Task #11265 (In Progress): Review branch 3821-collection-file-manage
Lucas Di Pentima
06:51 pm Story #11350 (New): [Nodemanager] Merge cloud_environment support to upstream libcloud
Fix tests so this pull request can be merged:
https://github.com/apache/libcloud/pull/969
Peter Amstutz
06:43 pm Story #11349: [Node Manager] Add status URL for node manager
See source:sdk/python/tests/keepstub.py and source:sdk/python/tests/test_keep_client.py for example of starting up a ... Tom Clegg
06:33 pm Story #11349 (New): [Node Manager] Add status URL for node manager
Implemented HTTP server which serves status URL with JSON format output
Configurable port #
Start with the data w...
Tom Morris
06:33 pm Story #3821: [Workbench] Delete and rename files in collections
Branch 3821-collection-file-manage @ commit:07e060d
* Added a "Remove selected files" option to the Selection drop...
Radhika Chippada
05:46 pm Feature #7709: [API] Upgrade API server to Rails 4.2
This LGTM, thanks! Lucas Di Pentima
05:36 pm Feature #7709: [API] Upgrade API server to Rails 4.2
Lucas Di Pentima wrote:
> * File @services/api/app/controllers/application_controller.rb@ - Line 491: Was @has_key?(...
Tom Clegg
04:59 pm Feature #7709: [API] Upgrade API server to Rails 4.2
Phew, lots of reading! Some minor comments:
* File @services/api/app/controllers/application_controller.rb@ - Line...
Lucas Di Pentima
05:34 pm Task #11292 (Resolved): Review 11209-unmount-replace
Lucas Di Pentima
05:33 pm Bug #11209: stuck keep fuse mounts not cleared by crunch-job
LGTM. All tests passing now. Lucas Di Pentima
02:13 pm Bug #11209: stuck keep fuse mounts not cleared by crunch-job
Fixed a race condition in the tests, and a problem with the refactored "standalone mode" code (evidently it's critica... Tom Clegg
04:29 pm Story #10401: [CWL] Limit expansion of Directory inputs
10401-limit-dir-expansion
* Bump cwltool version, add support for cwltool:LoadListing hint which controls expansio...
Peter Amstutz
04:02 pm Bug #11236 (Resolved): Dependencies in Ubuntu 16.04 (xenial) offer to REMOVE arvados-node-manager
Run... Javier Bértoli
02:48 pm Story #6777 (Rejected): [Documentation] recommend ruby2.1 package on debian 8
I don't think we can use the "system ruby" approach. There are some intervals when Debian ships with a version we can... Tom Clegg
02:43 pm Bug #8222 (Resolved): [SDK] "gem install arvados" fails on ruby <2.2.2 since activesupport 5.0.0 ...
arvados and arvados-cli gems decline activesupport 5 now Tom Clegg
02:19 pm Task #11340 (Resolved): Review 10401-run-upload-dir
Tom Clegg

03/27/2017

08:29 pm Bug #11257: [CWL] Fails with $schemas referencing remote resources.
Fix pending in #10401 (as part of larger pathmapper refactor) Peter Amstutz
07:33 pm Story #10401: [CWL] Limit expansion of Directory inputs
10401-run-upload-dir @ commit:7e9156a LGTM
Tom Clegg
07:17 pm Story #10401: [CWL] Limit expansion of Directory inputs
10401-run-upload-dir
Add support for uploading Directories in the "uploadfiles" method of arv-run (used by a-c-r)
Peter Amstutz
07:05 pm Task #11340 (Resolved): Review 10401-run-upload-dir
Peter Amstutz
06:35 pm Task #11264 (In Progress): Review 7709-api-rails4
Lucas Di Pentima
06:29 pm Bug #11209: stuck keep fuse mounts not cleared by crunch-job
Tom Clegg wrote:
> I figure since we'll try to mount at the literal path "/path/..." we have to assume "/path/..."...
Lucas Di Pentima
06:18 pm Feature #7709: [API] Upgrade API server to Rails 4.2
> we should do 4.2.5 because of Ubuntu16's default pg is 9.5
(Done, and in the meantime we have a workaround for thi...
Tom Clegg
06:14 pm Task #11337 (Resolved): Check ruby warnings and Rails upgrade notes
Tom Clegg
02:42 pm Task #11266 (Resolved): Review 11065-rotate-logs
Tom Clegg
02:42 pm Task #11329 (Resolved): Review 10766-install-ws
Tom Clegg
02:41 pm Task #11328 (Resolved): update Upgrading wiki
Tom Clegg

03/24/2017

08:27 pm Task #11337 (In Progress): Check ruby warnings and Rails upgrade notes
Tom Clegg
08:27 pm Task #11337 (Resolved): Check ruby warnings and Rails upgrade notes
Tom Clegg
08:03 pm Bug #11209: stuck keep fuse mounts not cleared by crunch-job
11209-unmount-replace @ commit:b7a664f09052ac048e506bed9bb48b54bc2a9bd4
* remove superfluous crunchstat import
* un...
Tom Clegg
02:12 pm Feature #7709: [API] Upgrade API server to Rails 4.2
some extra info: https://gist.github.com/nruth/a3bc1b75281109b036e4
we should do 4.2.5 because of Ubuntu16's defau...
Nico César
01:44 am Story #11308: Support Python3 for arvados-python-client & command line utilities
We appear to have suffered from serious scope creep here. Somehow we went from SDK & command line tools to almost all... Tom Morris

03/23/2017

10:15 pm Bug #11209: stuck keep fuse mounts not cleared by crunch-job
Lucas Di Pentima wrote:
> * File @services/fuse/arvados_fuse/command.py@
> ** Line 14: Can this line be eliminated ...
Tom Clegg
06:19 pm Bug #11209: stuck keep fuse mounts not cleared by crunch-job
* File @services/fuse/arvados_fuse/command.py@
** Line 14: Can this line be eliminated because of line 15?
** Shoul...
Lucas Di Pentima
08:58 pm Story #9132: [Crunch2] crunch-run uses official docker client library
Radhika Chippada wrote:
> * What ContainerStartOptions should we use?
Empty LGTM. The options seem to be for chec...
Tom Clegg
06:48 pm Story #9132: [Crunch2] crunch-run uses official docker client library
Branch 9132-dockerclient @ commit:374dff075f0d2961b3843d952ccca9f55d972e9a
* Uses new docker client API.
* What...
Radhika Chippada
08:37 pm Story #3821 (In Progress): [Workbench] Delete and rename files in collections
Radhika Chippada
08:15 pm Feature #10766 (Resolved): [Docs] [arvados-ws] make the arvados-ws documentation official, remove...
Applied in changeset arvados|commit:8ada36c931712304c4b2c70bdcbc316b1ad2c4e2. Tom Clegg
07:22 pm Feature #10766 (In Progress): [Docs] [arvados-ws] make the arvados-ws documentation official, rem...
Tom Clegg
06:20 pm Feature #10766: [Docs] [arvados-ws] make the arvados-ws documentation official, remove all mentio...
review commit:e8cc0d73309236d6efc243371969f83808e42d30
some c&p issues I mention Tom
the documentation is fairl...
Nico César
05:48 pm Feature #10766: [Docs] [arvados-ws] make the arvados-ws documentation official, remove all mentio...
10766-install-ws @ commit:e8cc0d73309236d6efc243371969f83808e42d30
Tom Clegg
08:05 pm Story #11065 (Resolved): [API] Delete rows from logs table when they exceed a configured threshold
Applied in changeset arvados|commit:4600343d1bff7ac4f7b9f08486541444c31af8b6. Tom Clegg
07:51 pm Story #11065: [API] Delete rows from logs table when they exceed a configured threshold
LGTM Radhika Chippada
07:19 pm Story #11065: [API] Delete rows from logs table when they exceed a configured threshold
Radhika Chippada wrote:
> * “Time to keep audit logs (a row in the log table added … “ => “Time to keep audit logs (...
Tom Clegg
03:38 pm Story #11065: [API] Delete rows from logs table when they exceed a configured threshold
* “Time to keep audit logs (a row in the log table added … “ => “Time to keep audit logs (a row in the log table *is*... Radhika Chippada
07:31 pm Task #11192 (In Progress): Review 9132-dockerclient
Tom Clegg
06:55 pm Bug #11221 (Resolved): [systemd] Always restart exited services, even after 3 startup failures
Applied in changeset arvados|commit:a8378b8deaa2bbf9d2c154d9d9bb072538c288cc. Tom Clegg
05:10 pm Bug #11221: [systemd] Always restart exited services, even after 3 startup failures
review at commit:273a233818ae39e843fab0276f9e381da6645d28
Ready to merge
Nico César
05:50 pm Task #11328 (In Progress): update Upgrading wiki
Tom Clegg
05:48 pm Task #11328 (Resolved): update Upgrading wiki
Tom Clegg
05:48 pm Task #11327 (Resolved): update install docs
Tom Clegg
05:47 pm Task #11327 (Resolved): update install docs
Tom Clegg
05:48 pm Task #11329 (Resolved): Review 10766-install-ws
Tom Clegg
05:10 pm Task #11311 (Resolved): Review 11221-always-restart-services
Nico César
04:48 pm Task #11311 (In Progress): Review 11221-always-restart-services
Nico César
04:11 pm Feature #3231 (Closed): design document for websockets/event bus
Tom Clegg
04:03 pm Task #11292 (In Progress): Review 11209-unmount-replace
Lucas Di Pentima
03:20 pm Task #11267 (Resolved): Review 10669-safe-http-cache
Peter Amstutz
02:26 pm Task #11267 (In Progress): Review 10669-safe-http-cache
Peter Amstutz
03:00 pm Bug #10669 (Resolved): googleapiclient.errors.InvalidJsonError retrieving discovery document
Applied in changeset arvados|commit:1667f9860de21d29bbe32bb827db29eca62d9aeb. Tom Clegg
02:56 pm Bug #10669: googleapiclient.errors.InvalidJsonError retrieving discovery document
Peter Amstutz wrote:
> Did you try the multithreaded test_cache_crud against the regular httplib2 cache? Does the (...
Tom Clegg
02:52 pm Bug #10669: googleapiclient.errors.InvalidJsonError retrieving discovery document
Ah yes, older versions of httplib2 used just the md5 but current versions use a munged url plus md5. And yeah, I assu... Tom Clegg
02:33 pm Bug #10669: googleapiclient.errors.InvalidJsonError retrieving discovery document
For what its worth, from my cache directory:
Old filename:
qr1hi.arvadosapi.com,discovery,v1,apis,arvados,v1,rest...
Peter Amstutz
02:08 pm Bug #10669: googleapiclient.errors.InvalidJsonError retrieving discovery document
Did you try the multithreaded test_cache_crud against the regular httplib2 cache? Does the (unsafe) cache fail the t... Peter Amstutz
02:26 pm Task #11312 (Resolved): Review 11255-docker-host-networking
Peter Amstutz
02:26 pm Task #11269 (Resolved): Review 11170-stale-squeue-procs
Peter Amstutz
01:55 pm Feature #11255 (Resolved): [Crunchv2] Option to use host networking for containers
Applied in changeset arvados|commit:ae970cb115251915c0a8e1052b23acdd2ab70fee. Peter Amstutz
01:35 pm Bug #11170 (Resolved): Stale squeue processes on c97qk caused by "crunch-dispatch --jobs"
Applied in changeset arvados|commit:83203f5c739ee0b0199e76babccb60e832a0de8e. Lucas Di Pentima
01:31 pm Bug #11170: Stale squeue processes on c97qk caused by "crunch-dispatch --jobs"
Lucas Di Pentima wrote:
> Done: commit:2741b54
LGTM
Peter Amstutz
01:00 pm Task #11266 (In Progress): Review 11065-rotate-logs
Radhika Chippada
04:21 am Task #11316 (Resolved): make other components' integration tests pass
Tom Clegg

03/22/2017

10:02 pm Bug #10669: googleapiclient.errors.InvalidJsonError retrieving discovery document
10669-safe-http-cache @ commit:514cd364c3cb27b633c1368cd06d6a54927c98a8
This branch uses ~/.cache/arvados/discover...
Tom Clegg
05:19 pm Bug #10669 (In Progress): googleapiclient.errors.InvalidJsonError retrieving discovery document
Tom Clegg
09:23 pm Task #11318 (Resolved): thread- and process-safe cache
Tom Clegg
05:11 pm Task #11318 (In Progress): thread- and process-safe cache
Tom Clegg
05:11 pm Task #11318 (Resolved): thread- and process-safe cache
Tom Clegg
08:25 pm Feature #10218 (Resolved): [Crunch2] Gather and record cloud/physical node information for each c...
Applied in changeset arvados|commit:dc6c3fccb583ae98eee808addb526c45ebdbf2c6. Lucas Di Pentima
07:48 pm Feature #10218: [Crunch2] Gather and record cloud/physical node information for each container
Any reason not to combine the paths like {"df", "-m", "/", os.TempDir()}?
LogContainerRecord() should call @defer ...
Tom Clegg
07:35 pm Feature #10218: [Crunch2] Gather and record cloud/physical node information for each container
More updates: commit:a54e888
Test run: https://ci.curoverse.com/job/developer-run-tests/202/
Re-ran failed test: ht...
Lucas Di Pentima
06:18 pm Feature #10218: [Crunch2] Gather and record cloud/physical node information for each container
Updates at commit:5976c75
Test run: https://ci.curoverse.com/job/developer-run-tests/200/
Now the whole container...
Lucas Di Pentima
06:29 pm Story #7824 (In Progress): [SDKs] arv-get and arv-ls should use new PySDK Collection APIs
Lucas Di Pentima
05:28 pm Task #11319 (Resolved): Review 7709-sdk-cli-active_support
Lucas Di Pentima
05:14 pm Task #11319 (Resolved): Review 7709-sdk-cli-active_support
Tom Clegg
05:28 pm Feature #7709: [API] Upgrade API server to Rails 4.2
LGTM, please merge Lucas Di Pentima
05:14 pm Feature #7709: [API] Upgrade API server to Rails 4.2
7709-sdk-cli-active_support @ commit:2fd606b328508babad9af6c0a30c159568b525c2 Tom Clegg
05:05 pm Feature #11255: [Crunchv2] Option to use host networking for containers
flag help messages should probably just indent with tabs instead of a combination of spaces and tabs. The rest LGTM, ... Tom Clegg
04:29 pm Feature #11255: [Crunchv2] Option to use host networking for containers
11255-docker-host-networking updated:
-container-enable-networking=[default, always]
-container-network-mode=[a...
Peter Amstutz
02:45 pm Task #11316 (In Progress): make other components' integration tests pass
Tom Clegg
02:45 pm Task #11316 (Resolved): make other components' integration tests pass
Tom Clegg
02:21 pm Bug #11170: Stale squeue processes on c97qk caused by "crunch-dispatch --jobs"
Done: commit:2741b54 Lucas Di Pentima
02:09 pm Bug #11170: Stale squeue processes on c97qk caused by "crunch-dispatch --jobs"
Can we get... Peter Amstutz
01:51 pm Bug #11170: Stale squeue processes on c97qk caused by "crunch-dispatch --jobs"
New updates at commit:077878d
Test run: https://ci.curoverse.com/job/developer-run-tests/197/
I've updated the te...
Lucas Di Pentima
02:06 pm Task #11298 (Resolved): make tests pass in rails4
Tom Clegg

03/21/2017

06:45 pm Bug #11278: Trailing space on string pasted into search box should not cause "Oops request failed"
This failure is happening in /pipeline_instances and project#show pages as well. Radhika Chippada
05:48 pm Story #6053 (Resolved): [Workbench] [Performance] Dashboard display is sluggish
Now the collections and links are retrieved in one call. And the redundant nodes calls are eliminated. Radhika Chippada
05:23 pm Bug #4923 (Resolved): [Workbench] Editable "name" column is presented but not actually available ...
For object types with no name column, such as Humans and Specimens, the column no longer displays the editable option... Radhika Chippada
05:13 pm Feature #11255: [Crunchv2] Option to use host networking for containers
11255-docker-host-networking @ commit:bfd73917834d89e9e8c55b6bb4e05912741fbf8a
I think the flag docs should say "f...
Tom Clegg
04:33 pm Feature #11255 (In Progress): [Crunchv2] Option to use host networking for containers
Peter Amstutz
04:56 pm Task #11312 (In Progress): Review 11255-docker-host-networking
Tom Clegg
04:33 pm Task #11312 (Resolved): Review 11255-docker-host-networking
Peter Amstutz
04:52 pm Bug #4041 (Resolved): [SDKs] arv pipeline_instance --help should work even if api server is not r...
Now "arv pipeline_instance --help" displays help information even when the API server is not running. Radhika Chippada
04:39 pm Story #3462 (Closed): [Workbench] We need a name for the drop-down menu with email address.
The UI changed since this ticket creation and we now use a User icon for this menu and address it as such. Radhika Chippada
03:40 pm Story #11065: [API] Delete rows from logs table when they exceed a configured threshold
11065-rotate-logs @ commit:37e995fb7423b2b353c599e2a1b00bda7c29ee6f Tom Clegg
08:00 am Story #11065 (In Progress): [API] Delete rows from logs table when they exceed a configured thres...
Tom Clegg
03:06 pm Task #11311 (Resolved): Review 11221-always-restart-services
Tom Clegg
02:46 pm Bug #11309 (New): [Crunch2] crunchstat-summary --container UUID should summarize container logs
Tom Clegg
08:00 am Feature #7709 (In Progress): [API] Upgrade API server to Rails 4.2
Tom Clegg
08:00 am Task #11298 (In Progress): make tests pass in rails4
Tom Clegg
08:00 am Task #11297 (Resolved): update bundle
Tom Clegg
06:08 am Story #11308 (New): Support Python3 for arvados-python-client & command line utilities
Python 3 has been available for many years and the Python 2/3 migration is reaching its final stages. As a first ste... Tom Morris

03/20/2017

11:41 pm Bug #11170: Stale squeue processes on c97qk caused by "crunch-dispatch --jobs"
Updates at commit:79e53c0
Test run: https://ci.curoverse.com/job/developer-run-tests/196/
Lucas Di Pentima
07:32 pm Bug #11170: Stale squeue processes on c97qk caused by "crunch-dispatch --jobs"
@squeue_jobs@ and @scancel@ should use the block form of @IO.popen()@ so that it is closed automatically. See @stdou... Peter Amstutz
07:02 pm Bug #11170: Stale squeue processes on c97qk caused by "crunch-dispatch --jobs"
Updated at branch @11170-stale-squeue-procs@ - commit:f31475d
Test run: https://ci.curoverse.com/job/developer-run-t...
Lucas Di Pentima
08:08 pm Feature #11255 (New): [Crunchv2] Option to use host networking for containers
Peter Amstutz
07:39 pm Feature #11255 (In Progress): [Crunchv2] Option to use host networking for containers
Peter Amstutz
05:22 pm Feature #10218: [Crunch2] Gather and record cloud/physical node information for each container
Is it necessary to split JSON into multiple lines rather than just writing it as one chunk? If we write it as one chu... Tom Clegg
03:47 pm Task #11199 (In Progress): Review 10218-record-node-info
Tom Clegg
02:20 pm Feature #7709: [API] Upgrade API server to Rails 4.2
So far, the most annoying part has been making the websocket tests (or server?) work. Switching to arvados-ws and aba... Tom Clegg
02:14 pm Bug #3224: [Workbench] Search box on collections page should use infinite scroll instead of (brok...
The collections page is linked from the dashboard ("all collections" button).
All of the bugs noted still exist to...
Tom Clegg
01:31 pm Bug #11071: [Workbench] qr1hi performance tests are broken
I updated the table above:... Nico César

03/19/2017

01:20 am Task #11298 (Resolved): make tests pass in rails4
Tom Clegg
01:19 am Task #11297 (In Progress): update bundle
Tom Clegg
01:19 am Task #11297 (Resolved): update bundle
Tom Clegg

03/18/2017

06:28 am Bug #11296 (New): [arv-put] bad progress indicator
/usr/bin/arv-put 0.1.20170309224426
The progress indicator for my upload currently looks like:
$ time arv-put -...
Tom Morris

03/17/2017

08:59 pm Bug #11170 (In Progress): Stale squeue processes on c97qk caused by "crunch-dispatch --jobs"
Lucas Di Pentima
08:41 pm Task #11292 (Resolved): Review 11209-unmount-replace
Tom Clegg
08:41 pm Bug #11209: stuck keep fuse mounts not cleared by crunch-job
11209-unmount-replace @ commit:5752685c137c5e37e13845f5328e9a3930fa3100
This should let us replace the @"mount|awk...
Tom Clegg
08:41 pm Feature #10218: [Crunch2] Gather and record cloud/physical node information for each container
Updates in branch @10218-record-node-info@ at commit:b30e81e
Test run: https://ci.curoverse.com/job/developer-run-te...
Lucas Di Pentima
08:40 pm Bug #11288 (Resolved): [Nodemanager] Need reason to set DOWN state
Applied in changeset arvados|commit:de283bd8dd383a4177bb714212cf7c59f38a23d8. Peter Amstutz
05:22 pm Bug #11288 (Resolved): [Nodemanager] Need reason to set DOWN state
Slurm expects a reason when setting node to DOWN:... Peter Amstutz
06:15 pm Feature #11100: [CWL] Intermediary collection handling can be specified
* Add a "output_ttl" on container request which means output will have trash_at and delete_at set now + output_ttl (a... Peter Amstutz
04:56 pm Task #11268 (Resolved): Review 11014-hide-node-status
Lucas Di Pentima
01:25 am Task #11268 (In Progress): Review 11014-hide-node-status
Radhika Chippada
02:50 pm Bug #11014 (Resolved): [Workbench] Hide the "idle/busy nodes" part of the dashboard if crunch1 AP...
Applied in changeset arvados|commit:47178c71032b476e34fd0c6b10065e1b96a568f1. Lucas Di Pentima
02:21 pm Bug #11014: [Workbench] Hide the "idle/busy nodes" part of the dashboard if crunch1 APIs are disa...
Thanks for the comments, all addressed at commit:bf03dd4
Test run: https://ci.curoverse.com/job/developer-run-test...
Lucas Di Pentima
02:40 am Bug #11014: [Workbench] Hide the "idle/busy nodes" part of the dashboard if crunch1 APIs are disa...
* Rather than executing “PipelineInstance.api_exists?” multiple times, can we declare a variable such as “show_node_s... Radhika Chippada
02:12 pm Story #11285 (New): Update Pipeline Optimization wiki with CWL/Crunchv2
update https://dev.arvados.org/projects/arvados/wiki/Pipeline_Optimization with CWL references instead of pipeline te... Bryan Cosca
01:57 pm Bug #11283 (New): duplicate key value violates unique constraint "index_nodes_on_slot_number"
this is part of a 2.6G log file: ... Nico César

03/16/2017

08:57 pm Task #11271 (Resolved): Review 11254-nodemanager-no-actor
Peter Amstutz
08:40 pm Task #11271 (In Progress): Review 11254-nodemanager-no-actor
Tom Clegg
08:55 pm Bug #11254 (Resolved): [Node manager] backtrace on node shutdown
Applied in changeset arvados|commit:996b635700d7270229200a56d2c2b9f7c96a84fb. Peter Amstutz
08:39 pm Bug #11254: [Node manager] backtrace on node shutdown
11254-nodemanager-no-actor @ commit:2c69d49 LGTM
...although I'd say the duplicated conditions here were already a...
Tom Clegg
08:28 pm Bug #4124: [Crunch] Socket timed out on send/recv operation causes pipeline failure
I don't know if we ever updated our default puppet configuration.
We've seen some unexplained SLURM timeouts on so...
Peter Amstutz
07:13 pm Bug #11014: [Workbench] Hide the "idle/busy nodes" part of the dashboard if crunch1 APIs are disa...
Re-ran the tests here: https://ci.curoverse.com/job/developer-run-tests/192/
Lucas Di Pentima
06:22 pm Bug #11014: [Workbench] Hide the "idle/busy nodes" part of the dashboard if crunch1 APIs are disa...
Updates on branch @11014-hide-node-status@ at commit:73dbf5b
Tests run at: https://ci.curoverse.com/job/developer-ru...
Lucas Di Pentima
02:48 pm Bug #11014 (In Progress): [Workbench] Hide the "idle/busy nodes" part of the dashboard if crunch1...
Lucas Di Pentima
04:52 am Bug #11278 (New): Trailing space on string pasted into search box should not cause "Oops request ...
String was "170302-e00504-0041-bhh5ytalxx "
Deleting the trailing space causes this search to work
Tom Morris
01:43 am Bug #9588 (Resolved): [CWL] cwl-runner parses nested arrays repetively
This is no longer an issue. Jiayong Li

03/15/2017

11:13 pm Task #3718 (Closed): Hash out desired API with science team
Tom Morris
11:13 pm Task #3957 (Closed): crunch-job uses num_retries support in Perl SDK
Tom Morris
11:12 pm Task #3956 (Closed): Add num_retries arguments throughout Perl SDK
Tom Morris
11:12 pm Task #3060 (Closed): List of shared folders should say who owns each one (or description)
Tom Morris
11:12 pm Task #3058 (Closed): Suggest "what to do next" when viewing a new/empty folder
Tom Morris
11:12 pm Task #2645 (Closed): Generate "ready to ingest" message on the event bus
Tom Morris
11:12 pm Task #2633 (Closed): Implement TLS support internally
Tom Morris
11:12 pm Task #2636 (Closed): Test SSL support
Tom Morris
11:09 pm Task #5031 (Closed): Review/feedback
Tom Morris
11:04 pm Task #7726 (Closed): Review 7724-scoped-token
Tom Morris
10:54 pm Task #8846 (Closed): Review
Tom Morris
10:53 pm Task #9533 (Closed): Review 4753-websocket-test-port
Tom Morris
10:53 pm Task #2806 (Closed): Delete active and success attributes from pipeline_instance
Tom Morris
10:43 pm Task #3458 (Closed): Review 3452-put-collection-in-project
Tom Morris
10:27 pm Task #8955 (Closed): Review 8952-node-manager-safer-slurm-shutdown-check-wip
Tom Morris
08:13 pm Bug #10669 (New): googleapiclient.errors.InvalidJsonError retrieving discovery document
Tom Morris
08:12 pm Bug #10669 (Duplicate): googleapiclient.errors.InvalidJsonError retrieving discovery document
Tom Morris
08:12 pm Bug #9521 (Duplicate): Corrupt discovery document should be handled better
Tom Morris
08:10 pm Task #11272 (New): Review
Lucas Di Pentima
08:10 pm Task #11271 (Resolved): Review 11254-nodemanager-no-actor
Peter Amstutz
08:10 pm Task #11269 (Resolved): Review 11170-stale-squeue-procs
Lucas Di Pentima
08:07 pm Task #11268 (Resolved): Review 11014-hide-node-status
Radhika Chippada
08:07 pm Task #11267 (Resolved): Review 10669-safe-http-cache
Tom Clegg
08:07 pm Task #11266 (Resolved): Review 11065-rotate-logs
Tom Clegg
08:07 pm Task #11265 (Resolved): Review branch 3821-collection-file-manage
Radhika Chippada
08:07 pm Task #11264 (In Progress): Review 7709-api-rails4
Tom Clegg
08:07 pm Task #11263 (New): Review
Tom Clegg
08:06 pm Bug #11254 (In Progress): [Node manager] backtrace on node shutdown
Tom Morris
08:03 pm Bug #11254 (Resolved): [Node manager] backtrace on node shutdown
Fixed slurmd in the compute nodes and it is working ok now. Javier Bértoli
06:53 pm Bug #11254: [Node manager] backtrace on node shutdown
The backtrace looks like an unintended side effect of #10846.
On further research, we determined the underlying re...
Peter Amstutz
03:45 pm Bug #11254 (Resolved): [Node manager] backtrace on node shutdown
After upgrading c97qk to Xenial, trying to run a test job https://workbench.c97qk.arvadosapi.com/pipeline_instances/c... Javier Bértoli
07:43 pm Feature #11255: [Crunchv2] Option to use host networking for containers
summon Nico before discussing implementing Nico César
03:50 pm Feature #11255 (Resolved): [Crunchv2] Option to use host networking for containers
Docker bridge networking has bugs on certain kernels. Add a flag to crunch-run to instruct containers to use host ne... Peter Amstutz
07:35 pm Story #9132: [Crunch2] crunch-run uses official docker client library
Please take over 9132-dockerclient
* Replace API calls to equivalent ones, see https://godoc.org/github.com/docker...
Peter Amstutz
07:31 pm Bug #11261: [API] full text search on pipeline_instances table is extremely slow (wrong index?)
... Tom Clegg
07:30 pm Bug #11261: [API] full text search on pipeline_instances table is extremely slow (wrong index?)
Copied from #11071:
Version query:...
Tom Clegg
07:29 pm Bug #11261 (New): [API] full text search on pipeline_instances table is extremely slow (wrong ind...
Tom Clegg
07:26 pm Bug #11260 (New): [API] "arv group contents" produces a 404 error (seems to POST instead of GET?)
Tom Clegg
07:23 pm Bug #11071: [Workbench] qr1hi performance tests are broken
Version query:... Tom Clegg
04:55 pm Bug #11071: [Workbench] qr1hi performance tests are broken
I searched using "hash" in our staging environment, and I saw about 10% improvement for the first page.
Before:
...
Radhika Chippada
07:21 pm Story #11259 (Duplicate): [VG][myBRCA] Update status API at beginning and end of sample run
Tom Morris
07:13 pm Story #11259 (Duplicate): [VG][myBRCA] Update status API at beginning and end of sample run
Tom Morris
06:54 pm Bug #11257 (New): [CWL] Fails with $schemas referencing remote resources.
Workflows with external http resources listed in $schemas get into trouble with the code to find and upload local dep... Peter Amstutz
05:37 pm Bug #11237: python-arvados-python-client depends on old versions of packages
This pin comes from commit:ec3ff9b4 "Pin google-api-python-client and oauth2client versions to deal with incompatabil... Tom Clegg
05:20 pm Task #11141 (Resolved): Review 6520-nodemanager-docs
Peter Amstutz
03:31 pm Story #11251: [Tests] Make workbench integration tests finish faster (at least in Jenkins)
IMO we should be fixing slow/redundant test cases before we give up and make the test pipeline/server fatter. It look... Tom Clegg
03:23 am Story #11251: [Tests] Make workbench integration tests finish faster (at least in Jenkins)
Branch 11251-split-wb-integration-tests takes an initial stab at using minutest --exclude option.
This branch inte...
Radhika Chippada
03:19 am Story #11251: [Tests] Make workbench integration tests finish faster (at least in Jenkins)
Similar to workbench_units, workbench_functionals, workbench_integration, it would be helpful if we further split wor... Radhika Chippada
01:29 am Story #11251 (New): [Tests] Make workbench integration tests finish faster (at least in Jenkins)
Radhika Chippada
03:11 pm Task #11205 (Resolved): Review branch 11071-fts-perf-test
Radhika Chippada
02:54 pm Bug #11209: stuck keep fuse mounts not cleared by crunch-job
The "fuse bug":https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=632258 seems to be related to a double-mounted mount... Tom Clegg
11:15 am Bug #11209: stuck keep fuse mounts not cleared by crunch-job
When I run `umount -f` to clear the problem, it has always been as root. Never tried running it as any other user. Joshua Randall
02:41 pm Story #9589: [Workbench] Update collection interface for collections with non-nil trash_at
* Do we want to support "Move collection" option for an expiring collection?
* Do we want to support "Copy to proj...
Radhika Chippada
12:15 am Bug #4124: [Crunch] Socket timed out on send/recv operation causes pipeline failure
Peter - please review whether the recommended message timeout has already been incorporated and close this out. Thx Tom Morris

03/14/2017

11:52 pm Bug #4886 (Closed): [Docker] Web upload stuck at "upload in progress"
Sorry this lingered so long, but the code base has change so much since this was reported that it'd be impossible to ... Tom Morris
11:41 pm Bug #8371: [Deployment] Upgrading Rails packages on CentOS uninstalls them
Javier - can you please review the current state of this and either close or update? Thanks! Tom Morris
08:05 pm Bug #11071 (Resolved): [Workbench] qr1hi performance tests are broken
Applied in changeset arvados|commit:b1aa6c85c3db947f0963b1bddb2784c115f5c97d. Radhika Chippada
07:59 pm Bug #11071: [Workbench] qr1hi performance tests are broken
> Do you think that the line at services/api/app/controllers/arvados/v1/groups_controller.rb:99 could be improved in ... Radhika Chippada
07:26 pm Bug #11071: [Workbench] qr1hi performance tests are broken
This lgtm. Only one little question: Do you think that the line at @services/api/app/controllers/arvados/v1/groups_co... Lucas Di Pentima
03:04 pm Bug #11071: [Workbench] qr1hi performance tests are broken
Tests @ https://ci.curoverse.com/job/developer-run-tests/186/ Radhika Chippada
07:56 pm Bug #11186 (Duplicate): Priority 0 state shouldn't be labeled "Ready"
See #11250 Peter Amstutz
06:29 pm Bug #11186: Priority 0 state shouldn't be labeled "Ready"
Suggest "Stopped" Peter Amstutz
07:15 pm Story #11123 (Resolved): Add node manager to install guide
Applied in changeset arvados|commit:449d780f0a470f67d1a28fe1459a8bab79562069. Peter Amstutz
04:02 pm Story #11123: Add node manager to install guide
Made some updates, if you want to take another quick look: 6520-nodemanager-docs Peter Amstutz
03:10 pm Story #11123: Add node manager to install guide
Yeap. My bad, probably run the wrong @git diff@ when checking which files needed to review.
Now, ignoring my last...
Javier Bértoli
02:57 pm Story #11123: Add node manager to install guide
Javier Bértoli wrote:
> Question, in *doc/install/install-keepstore.html.textile.liquid*: does it make sense to docu...
Peter Amstutz
06:30 pm Story #11250 (New): [Workbench] Better user-facing terms for container states
* When a container is in the slurm queue, its state is displayed as "Locked". This is confusing to users who don't a... Peter Amstutz
06:18 pm Feature #11249 (New): [SDKs] Writable collection files returned by Go SDK should be seekable
The reading+seeking and writing code need to be reconciled so OpenFile and Create return an object that can read, wri... Tom Clegg
05:29 pm Feature #10664 (Duplicate): arv-keepdocker should upload images with image:tag
Tom Clegg
03:37 pm Task #11205 (In Progress): Review branch 11071-fts-perf-test
Lucas Di Pentima
03:21 pm Task #11141 (Feedback): Review 6520-nodemanager-docs
Javier Bértoli

03/13/2017

06:48 pm Bug #11209 (In Progress): stuck keep fuse mounts not cleared by crunch-job
Tom Clegg
06:48 pm Bug #11209: stuck keep fuse mounts not cleared by crunch-job
Normally crunch-job frees up mount points using @fusermount -u -z@ but for some reason it isn't working here:
<pre...
Tom Clegg
04:55 pm Bug #11226: [SDK] Python client tries to cache discovery document at the same local path regardle...
Tom Morris wrote:
> I take it this got instagroomed while I was gone.
>
> Does this mean that #10669 is fixed (an...
Peter Amstutz
04:19 pm Bug #11226: [SDK] Python client tries to cache discovery document at the same local path regardle...
I take it this got instagroomed while I was gone.
Does this mean that #10669 is fixed (and can be closed) as well?
Tom Morris

03/11/2017

07:23 pm Bug #11238: job_task creation fails with ApiError - HttpError 422 - ActiveRecord::StatementInvali...
I've followed the directions at https://blog.dob.sk/2012/05/19/fixing-pg_dump-invalid-memory-alloc-request-size/ to c... Joshua Randall

03/10/2017

10:16 pm Story #8773 (Closed): [GATK Queue] Support a mechanism to redirect stderr for children
Tom Clegg
10:15 pm Bug #7000 (Closed): [Docker] API server starts before PostgreSQL is ready
Tom Clegg
10:15 pm Bug #7007 (Closed): [Docker] Bootstrap font fails to load in Workbench Docker image
Tom Clegg
10:15 pm Bug #7006 (Closed): [Docker] Fix SSO configuration in published images
Tom Clegg
10:15 pm Bug #7005 (Closed): [Docker] API server uses omniauth.rb for SSO configuration, not application.yml
Tom Clegg
10:15 pm Bug #6998 (Closed): [Docker] Workbench image doesn't serve HTTPS
Tom Clegg
10:10 pm Bug #5949 (Closed): [DRAFT] [Workbench] Users can be notified about changes to important pipelines
Tom Clegg
10:07 pm Feature #5828 (Closed): [Workbench] Create new collection with selected files copy streams as wel...
Tom Clegg
10:07 pm Bug #5850 (Closed): All clients authenticate directly against SSO server without going through AP...
Tom Clegg
10:04 pm Bug #5876 (Closed): [Docker] Needs smarter dependency ordering when restarting existing containers
Tom Clegg
10:04 pm Bug #5878 (Closed): [Workbench] PipelineInstancesTest#test_Create_and_run_a_pipeline is not reliable
Tom Clegg
10:04 pm Bug #5892 (Closed): [Workbench] collections#index returns 504 Gateway Timeout
Tom Clegg
10:04 pm Bug #5897 (Closed): [FUSE] Catch and recover from any API client exceptions
Tom Clegg
10:03 pm Feature #5900 (Closed): [SDK] Implement arvados.gettaskparam(*args) to match arvados.getjobparam(...
Tom Clegg
10:02 pm Bug #5905 (Closed): [SDKs] Improve certificate validation in Python SDK
Tom Clegg
10:01 pm Bug #5908 (Closed): [Workbench] collection#show performing too many unnecessary API server reques...
Tom Clegg
10:01 pm Bug #5923 (Closed): Fiddlesticks when trying to view a log file
Tom Clegg
10:01 pm Bug #5919 (Closed): Keep errors
Tom Clegg
10:01 pm Feature #5928 (Closed): Syntax highlighting of viewing source in workbench
Tom Clegg
10:01 pm Bug #5945 (Closed): arv-get is slow for this collection
Tom Clegg
10:00 pm Bug #6019 (Closed): [FUSE] `ls` in a large home directory (4400+ items) takes too long
Tom Clegg
10:00 pm Bug #6025 (Closed): [SSO] Authenticate users with OAuth2
Tom Clegg
10:00 pm Story #5098 (Closed): [Keep] Design: using Arvados to browse, and run jobs on, input data that is...
Tom Clegg
10:00 pm Feature #5414 (Closed): [Keep] Use data stored remotely (not in local keepstore)
Tom Clegg
06:39 pm Story #4443 (Closed): [DRAFT] [Workbench] Tour Guide Dax follows you around for a while, showing ...
Tom Clegg
06:38 pm Story #4284 (Closed): [Crunch] Add unit and functional tests to crunchstat test suite
Tom Clegg
06:38 pm Bug #4123 (Closed): [API] move Job script/repository/docker validations from controller to model
Tom Clegg
06:36 pm Bug #4120 (Closed): [Workbench] [obsolete?] Pipeline state can be failed even though every job is...
Tom Clegg
06:35 pm Feature #3803 (Closed): [SDKs] Add a rate limiting feature to arv-put and arv-get (like rsync's b...
Tom Clegg
06:34 pm Story #3696 (Closed): [Workbench] Improve log viewer to more effectively expose relevant informat...
Tom Clegg
06:34 pm Feature #3987 (Closed): [Docker] Run a 5-second diagnostic suite after bringing up docker contain...
Tom Clegg
06:34 pm Bug #3910 (Closed): [SDKs] Client libraries should retry failed API requests after errors like Ga...
Tom Clegg
06:34 pm Feature #3955 (Closed): [Workbench] Render runtime-formatted timestamps as "8:00 am" or "Sep 23" ...
Tom Clegg
06:33 pm Feature #3923 (Closed): [Workbench] Use web notifications to alert user when pipelines finish
Tom Clegg
06:32 pm Story #3511 (Closed): [Documentation] Present an efficient pattern for developing a pipeline temp...
Tom Clegg
06:31 pm Story #3701 (Closed): [Workbench] Show current user's compute node usage over time
Tom Clegg
06:31 pm Story #3446 (Closed): [Workbench] Sort by name before uuid in search results.
Tom Clegg
06:30 pm Bug #3352 (Closed): [SDK] After ^C, arv-put sometimes exits but leaves processes/threads behind t...
Tom Clegg
06:30 pm Bug #3134 (Closed): [Workbench] Deleting a job in a project doesn't show delete wipe animation, i...
Tom Clegg
06:30 pm Bug #3166 (Closed): [Workbench] Generic "attributes" tab renders uuid as a link to the object, wi...
Tom Clegg
06:30 pm Bug #3483 (Closed): [Keep] Keep uses appropriate HTTP status codes for failed DELETE requests
Tom Clegg
06:29 pm Bug #3262 (Closed): [Documentation] Describe how to run tramp in emacs.
Tom Clegg
04:04 pm Bug #11238: job_task creation fails with ApiError - HttpError 422 - ActiveRecord::StatementInvali...
... Joshua Randall
03:36 pm Bug #11238: job_task creation fails with ApiError - HttpError 422 - ActiveRecord::StatementInvali...
These appear to be the corresponding log from the api server production.log (there does not appear to be any mention ... Joshua Randall
02:47 pm Bug #11238 (New): job_task creation fails with ApiError - HttpError 422 - ActiveRecord::Statement...
For some reason some of our jobs are failing with an API server error indicating a postgres statement was invalid bec... Joshua Randall
02:38 pm Task #11233 (Resolved): Review
Peter Amstutz

03/09/2017

10:13 pm Bug #11237: python-arvados-python-client depends on old versions of packages
When updating an Ubuntu 16.04 host, @python-arvados-python-client@ complains that the available versions are not suit... Javier Bértoli
10:08 pm Bug #11237 (New): python-arvados-python-client depends on old versions of packages
Javier Bértoli
09:41 pm Bug #11236 (Resolved): Dependencies in Ubuntu 16.04 (xenial) offer to REMOVE arvados-node-manager
Performing a dist-upgrade on an Ubuntu 16.04 (xenial) host offers to **REMOVE** @arvados-node-manager@
* Sources l...
Javier Bértoli
09:22 pm Bug #4344 (Resolved): [SDK] can't make an anonymous token from the cli
This works, but you have to say @"owner_uuid":"X"@, not @"user":"X"@. Tom Clegg
09:17 pm Bug #3999 (Closed): [Workbench] Pipeline timing number oddities
Tom Clegg
09:17 pm Bug #3855 (Closed): [SDK] New keep mount is very slow on initial usage
Tom Clegg
09:17 pm Bug #4132 (Closed): [Workbench] Add unit test infrastructure (and some examples) for JavaScript a...
Tom Clegg
09:16 pm Feature #3333 (Closed): [DRAFT] [Docker] Make local Docker install more useful for development
Tom Clegg
09:16 pm Bug #3847 (Resolved): [SDK] --project-uuid switch behaves strangely without = (seen in arv-keepdo...
Seems to have been fixed, although I don't see where/when.... Tom Clegg
08:14 pm Bug #5036: [FUSE] Provide a unique mount subtype
LGTM. Peter Amstutz
07:56 pm Bug #5036 (In Progress): [FUSE] Provide a unique mount subtype
Tom Clegg
07:56 pm Bug #5036: [FUSE] Provide a unique mount subtype
5036-arv-mount-type @ commit:fa8c5cdb36fa89af92087d6465b207d65ffc9618 adds a "--subtype FOO" arg, which makes the fil... Tom Clegg
07:50 pm Bug #11226 (Resolved): [SDK] Python client tries to cache discovery document at the same local pa...
Applied in changeset arvados|commit:82697fea93b1c87cdee27d2b9a76c1b7ac07497e. Peter Amstutz
03:49 pm Bug #11226: [SDK] Python client tries to cache discovery document at the same local path regardle...
+1 Peter Amstutz
03:48 pm Bug #11226: [SDK] Python client tries to cache discovery document at the same local path regardle...
Suggest we
# pass cache_discovery=False to google-api-client so we get back to what we thought we were doing, i.e., ...
Tom Clegg
03:45 pm Bug #11226: [SDK] Python client tries to cache discovery document at the same local path regardle...
Also want to do one of:
a) continue to use httplib2 caching, which is apparently not multithread/multiprocess safe...
Peter Amstutz
03:38 pm Bug #11226: [SDK] Python client tries to cache discovery document at the same local path regardle...
https://github.com/google/google-api-python-client/pull/127
I think we can use the @cache_discovery@ option to bui...
Peter Amstutz
03:55 pm Task #11233 (Resolved): Review
Peter Amstutz

03/08/2017

07:31 pm Bug #11226 (Resolved): [SDK] Python client tries to cache discovery document at the same local pa...
The Python SDK instructs httplib2 to cache the discovery document in @~/.cache/arvados/discovery@. However, the goog... Peter Amstutz
06:43 pm Task #11225 (In Progress): Update cwltool
Peter Amstutz
06:43 pm Task #11225 (In Progress): Update cwltool
Peter Amstutz
04:18 pm Bug #4748 (Closed): [API] Explain why there are 21 jobs with log = ""
Tom Clegg
04:17 pm Bug #4451 (Closed): [Workbench] Fiddlesticks when rerunning pipeline with edited template
Tom Clegg
04:16 pm Bug #4416 (Closed): [Workbench] "Manage" permission should be sufficient to edit project's name/d...
Tom Clegg
04:15 pm Bug #4440 (Closed): [Documentation] "Writing a Crunch script" is mysterious
Tom Clegg
04:15 pm Bug #4529 (Closed): [SDKs] Ensure Python and Go SDKs in a given situation always choose either pr...
Tom Clegg
04:14 pm Bug #4488 (Closed): [SDKs] arvados.keep.KeepClient.KeepService should know whether it is a proxy
Tom Clegg
04:12 pm Bug #4335 (Closed): [Crunch] Improve node startup speed. 15 min is too slow.
Tom Clegg
04:11 pm Bug #4218 (Closed): [Keep] Improve speed of /index requests
Tom Clegg
04:11 pm Story #4238 (Closed): [Documentation] Show how to run a pipeline instance without using a template.
Tom Clegg
04:10 pm Story #4305 (Closed): [Node Manager] Investigate and try to address RAM use
Tom Clegg
04:10 pm Bug #3688 (Closed): [API] User should be able to delete a project even though dependent logs exist
Tom Clegg
04:09 pm Story #3820 (Closed): [Crunch] Jobs need code from multiple git repositories
Tom Clegg
04:09 pm Feature #4131 (Closed): [Workbench] Support incremental loading of long job logs, using Range req...
Tom Clegg
04:09 pm Feature #4090 (Closed): Add code coverage report for workbench javascript
Tom Clegg
04:08 pm Story #4424 (Closed): [Keep] [DRAFT] Use stronger hash algorithm (such as SHA-2) for Keep blocks
Moved to [[Changing Keep hash algorithm]] Tom Clegg
04:06 pm Story #11123: Add node manager to install guide
Question, in *doc/install/install-keepstore.html.textile.liquid*: does it make sense to document the runit process, a... Javier Bértoli
03:52 pm Task #11141 (In Progress): Review 6520-nodemanager-docs
Peter Amstutz
03:01 pm Task #11224 (In Progress): Update API usage
Peter Amstutz
03:01 pm Task #11224 (In Progress): Update API usage
Peter Amstutz
02:20 pm Feature #10218 (In Progress): [Crunch2] Gather and record cloud/physical node information for eac...
Lucas Di Pentima
02:14 pm Bug #3624: [API] Remove redundant "updated_at" column
You know, we still have a redundant update_at column... Peter Amstutz

03/07/2017

10:23 pm Story #3812 (Closed): [SDKs] Clients should warn when they're expecting a newer API server
Tom Clegg
10:22 pm Bug #4756 (Rejected): [API] Add migration to change collection uuids to portable_data_hash in old...
Tom Clegg
10:03 pm Bug #3954 (Closed): [API] permission_to_update should prohibit all changes to content-addressable...
Tom Clegg
10:03 pm Bug #4003 (Closed): [Crunch] crunch-dispatch errors that relate to a specific job should be avail...
Tom Clegg
10:03 pm Bug #3831 (Closed): [Crunch] inconsistent find_or_create behavior in pipeline runner vs job
Tom Clegg
10:02 pm Bug #3556 (Closed): [Documentation] Avoid using the term "parallel" when referring to Crunch conc...
Tom Clegg
10:01 pm Feature #3768 (Closed): [SDKs] Speculatively pre-fetch data blocks while reading from a collection.
Tom Clegg
10:01 pm Bug #3789 (Closed): [API] Pipeline template (temporarily?) disappears after move to project
Tom Clegg
10:00 pm Bug #3810 (Closed): [Crunch] run-command should bail when $(file) expands to a nonexistent path
Tom Clegg
09:59 pm Story #3795 (Closed): [Crunch/SDKs] Tasks need more retry support
Tom Clegg
09:59 pm Feature #3633 (Closed): [Workbench] Compare pipeline templates, similar to the existing pipeline ...
Tom Clegg
09:59 pm Story #3347 (Closed): [Crunch] Run dev (and real) jobs using a syntax as close as possible to "py...
Tom Clegg
09:58 pm Bug #3470 (Closed): [Workbench] Ajax updated pages don't interact correctly with browser history.
Tom Clegg
09:58 pm Story #3157 (Closed): [Workbench] Admin button to download user list as CSV
Tom Clegg
09:57 pm Bug #3418 (Rejected): [Crunch] crunch-job ignores task sequence
Tom Clegg
09:57 pm Feature #3329 (Closed): [Docker] Loose ends in local docker install
Tom Clegg
09:56 pm Bug #3386 (Closed): [Documentation] Crunch script can exit 111 to indicate transient failure (i.e...
Tom Clegg
09:56 pm Support #2870 (Closed): Write up PGP data curation plan
Tom Clegg
09:56 pm Bug #3624 (Closed): [API] Remove redundant "updated_at" column
Tom Clegg
09:55 pm Feature #3095 (Closed): [Workbench] Add "run" button to each pipeline template in project view
Tom Clegg
09:43 pm Bug #10669: googleapiclient.errors.InvalidJsonError retrieving discovery document
Discovery doc retrieval is done by google-api-client. We ask it to use httplib2's built-in cache mechanism.
Unfort...
Tom Clegg
09:30 pm Bug #11222 (New): Docker load time on compute node is too long
using a-c-r --local, it took 10 minutes to load a 3GB Docker image... Bryan Cosca
09:16 pm Bug #11221: [systemd] Always restart exited services, even after 3 startup failures
11221-always-restart-services @ commit:273a233818ae39e843fab0276f9e381da6645d28 Tom Clegg
09:06 pm Bug #11221 (Resolved): [systemd] Always restart exited services, even after 3 startup failures
Currently, when postgresql is unavailable for ~300ms when arvados-ws is trying to start (which is normal for a bottin... Tom Clegg
08:45 pm Bug #3115 (Resolved): [API] Retrieving a nonexistent keep disk as an admin should not create a ne...
Applied in changeset arvados|commit:533a50bbcee4ece451a65e87066563a5b33ef150. Tom Clegg
08:03 pm Story #3043 (Resolved): [SDKs] Add Go SDK page to doc site with examples similar to Python etc
Tom Clegg
08:03 pm Story #3045 (Closed): [Workbench] Generalize "re-run this job" button
Tom Clegg
08:02 pm Bug #3097 (Closed): [Crunch] Pass script_parameters on stdin instead of JOB_PARAMETER_* environme...
Tom Clegg
08:02 pm Story #3017 (Closed): [Workbench] When comparing pipeline instances, show/highlight the differing...
Tom Clegg
08:02 pm Story #2932 (Closed): Pipeline has default name from pipeline template ("instance of X") and star...
Tom Clegg
08:02 pm Bug #3159 (Closed): Display of the "Add a new keep disk" button in the keep disks page in incorre...
Tom Clegg
08:00 pm Story #2661 (Closed): Security audit
Tom Clegg
08:00 pm Feature #3895 (Closed): set up dev ci server
Tom Clegg
07:59 pm Story #4599 (Closed): [Crunch] crunch-job should not retry tasks after its SLURM allocation is re...
Tom Clegg
07:53 pm Feature #6312 (Resolved): [Workbench] Use download service instead of passing Keep data through R...
Tom Clegg
07:52 pm Feature #7709: [API] Upgrade API server to Rails 4.2
Release notes: http://guides.rubyonrails.org/ Peter Amstutz
07:38 pm Feature #8801 (Duplicate): [Crunch] log free disk space before task starts
Tom Morris
07:37 pm Feature #8196 (Duplicate): [Crunch] Jobs should log the hardware of their compute node(s)
Tom Morris
07:31 pm Bug #4222 (Closed): [Keep] Rename -enforce-permissions to -bypass-read-permissions with default=f...
Tom Morris
07:30 pm Bug #3555 (Closed): [API] Rename nondeterministic to impure
Tom Morris
07:28 pm Feature #6191 (Resolved): Propagate stderr from all srun uses (e.g., clean-tmp and docker-install...
Tom Clegg
07:13 pm Story #4101 (Rejected): Workbench tests: app/controllers/projects_controller.rb
Tom Clegg
07:13 pm Story #4100 (Rejected): Workbench tests: app/helpers/application_helper.rb
Tom Clegg
07:12 pm Story #4099 (Rejected): Workbench tests: app/helpers/pipeline_instances_helper.rb
Tom Clegg
07:12 pm Story #4098 (Rejected): Workbench tests: app/controllers/pipeline_instances_controller.rb
Tom Clegg
07:12 pm Story #4097 (Rejected): Workbench tests: app/controllers/users_controller.rb
Tom Clegg
07:12 pm Story #4096 (Rejected): Workbench tests: app/helpers/provenance_helper.rb
Tom Clegg
07:12 pm Story #4095 (Rejected): Workbench tests: app/controllers/groups_controller.rb
Tom Clegg
07:12 pm Story #4094 (Rejected): Workbench tests: app/controllers/jobs_controller.rb
Tom Clegg
07:12 pm Story #4093 (Rejected): Workbench tests: app/helpers/vcf_pipeline_helper.rb
Tom Clegg
07:12 pm Story #4092 (Rejected): Workbench tests: app/helpers/jobs_helper.rb
Tom Clegg
07:11 pm Bug #6086 (Closed): [API] Creating new job sometimes takes too long
Tom Clegg
07:10 pm Story #6407 (Closed): [Workbench] Collection file trees are collapsible
Tom Clegg
06:59 pm Bug #10350 (Resolved): [Documentation] Update /api/authentication.html with correct information
Fixed in #10346 Peter Amstutz
06:57 pm Bug #9702 (Closed): [Crunch2] Five CWL conformance tests are failing with Crunch2
Closing this as it no longer reflects the current state of CWL on crunch v2.
The latest conformance test results c...
Peter Amstutz
06:55 pm Story #9132 (In Progress): [Crunch2] crunch-run uses official docker client library
Peter Amstutz
06:53 pm Task #8845 (Resolved): Diagnose
Parent ticket is resolved. Peter Amstutz
06:47 pm Task #7601 (Resolved): Review 6358-put-rendezvous
Parent ticket is resolved. Peter Amstutz
06:47 pm Task #6299 (Resolved): Review
Parent ticket is resolved. Peter Amstutz
06:46 pm Task #5680 (Resolved): Async dispatch hooks from CWL engine
CWL is supported an Arvados. Peter Amstutz
06:45 pm Task #5449: Update examples to use new Python Collection SDK and add deprecation notes to old APIs
Workflow examples using CWL don't involve the SDK.
Pipeline examples that use the Python SDK are already marked as...
Peter Amstutz
06:41 pm Feature #4223: [SDKs] arv keep docker --download to get image from Arvados
I still find myself wanting this feature occasionally, although we may want to abandon this particular branch. Peter Amstutz
06:39 pm Task #5681 (Closed): Task dispatch from CWL job runner
arvados-cwl-runner doesn't use job_tasks (which are specific to crunch v1).
Peter Amstutz
06:37 pm Task #5679 (Resolved): CWL job runner framework
CWL is supported on Arvados. Peter Amstutz
06:32 pm Task #2637 (Closed): Add support for filters to generic create API
Parent ticket closed. Peter Amstutz
06:31 pm Task #2628 (Closed): Write wiki page design for simple joins in REST API
Not currently planned. Peter Amstutz
06:31 pm Task #3884 (Closed): Review 3605-improved-dashboard
Revisit dashboard in future tickets. Peter Amstutz
06:30 pm Task #4703 (Resolved): Work on CWL draft 1 spec for tools
CWL supported on Arvados.
Peter Amstutz
06:30 pm Story #11139 (Resolved): [Node manager] Expected MemTotal for each cloud node size
Applied in changeset arvados|commit:4812b5639cfaf724540786fcd331aaa227635c77. Lucas Di Pentima
06:07 pm Story #11139: [Node manager] Expected MemTotal for each cloud node size
Thanks, LGTM Peter Amstutz
05:59 pm Story #11139: [Node manager] Expected MemTotal for each cloud node size
Updates & master branch merge at commit:101e3227b25c16874fa73660bfd7e338fbfe0da2
Tests: https://ci.curoverse.com/job...
Lucas Di Pentima
02:54 pm Story #11139: [Node manager] Expected MemTotal for each cloud node size
Can you add a test that shows that changing the configuration parameter changes the server calculator.
Can you add...
Peter Amstutz
06:29 pm Task #4686 (Resolved): Example wrapping bcbio sub-tool using CWL tool description
bcbio generates CWL that runs on Arvados. Peter Amstutz
06:29 pm Task #4613 (Resolved): Workbench template for generating UI
Workbench generates input form for CWL workflows. Peter Amstutz
06:28 pm Task #4612 (Resolved): Start writing user guide page
CWL support in Arvados is documented. Peter Amstutz
06:27 pm Task #4575 (Resolved): Review 4035-pipeline-support-cwl-tool
CWL is supported in Arvados. Peter Amstutz
06:27 pm Task #4420 (Resolved): Support user+pass database managed locally by SSO server
Implemented commit:49ab94b9d8d2c6e85c22b0e19171255af66db5e2 Peter Amstutz
06:25 pm Task #4146 (Closed): Fix crunch-job
Parent ticket closed. Peter Amstutz
06:24 pm Bug #4028 (Closed): [Crunch] Task stdout appearing in job logs should be labeled "stdout" instead...
Seems unlikely this will be fixed.
Crunch v2 logs distinguish between stdout and stderr.
Peter Amstutz
06:23 pm Task #4144 (Resolved): Use num_retries on regular collection writer instead of robust_put
Was implemented in commit:1281ecab8f2396739ee9232c36796e46cd551426
Also run-command is nearing end-of-life as it i...
Peter Amstutz
06:20 pm Task #3887 (Closed): Fix tests
Revisit dashboard / workbench design in future tickets. Peter Amstutz
06:20 pm Feature #3605 (Closed): [Workbench] improved dashboard page
Will dashboard design in future tickets. Peter Amstutz
06:18 pm Task #3324 (Closed): Build new docker image, run on qr1hi with test data
Bcbio now generates CWL to run on Arvados. Uses upstream bcbio Docker image. Peter Amstutz
06:17 pm Feature #3319 (Closed): [Sample Pipelines] Run monolithic bcbio pipeline on tiny dataset. Package...
Bcbio now generates CWL to run on Arvados. Peter Amstutz
06:16 pm Task #2648 (Closed): Write tests
No longer applicable due to closing of original ticket. Peter Amstutz
06:15 pm Task #2649 (Closed): Assign collection to project
Obsolete by arv-put --project-uuid Peter Amstutz
06:15 pm Task #3230 (Closed): Support bcbio parallelization framework
bcbio generates CWL files which are runnable on Arvados. Peter Amstutz
06:14 pm Task #2647 (Closed): Put files from staging directory into Keep
Obsoleted by enabling arv-put to upload directly to Keep via keepproxy. Peter Amstutz
06:14 pm Task #2643 (Closed): "Ready to ingest" endpoint (in /actions controller?)
Obsoleted by enabling arv-put to write directly to Keep using keepproxy. Peter Amstutz
06:13 pm Feature #2176 (Closed): API server supports atomic find_or_create operation
Containers API uses a different approach. Does not have compelling use case in other APIs. Peter Amstutz
06:12 pm Story #2627 (Closed): Write design for joins in API
Currently no plans to do this. Peter Amstutz
06:07 pm Task #11200 (Resolved): Review 11139-nodemanager-mem-scale-factor
Peter Amstutz
02:46 pm Task #11200 (In Progress): Review 11139-nodemanager-mem-scale-factor
Peter Amstutz
03:57 pm Bug #11220 (New): [SDKs] Fix misleading arv-mount/pysdk error messages by removing obsolete "fetc...
Current error message:... Tom Clegg
03:54 pm Bug #9435 (Resolved): keep-balance failing when a small page of collections has the same modified...
In #9998 keep-balance started using count="none" and accommodating multiple pages of identical timestamps, so this sh... Tom Clegg
03:48 pm Story #6830 (Resolved): [API] [keep-balance] Option to return unsigned manifests from collections...
This was implemented in #9998. Tom Clegg
03:39 pm Bug #11190: Containers seem to run more than once, which isn't supposed to happen
... Tom Clegg
03:15 pm Bug #11166 (Resolved): [Crunch2] crunchrun.go should avoid name collisions when creating log coll...
Applied in changeset arvados|commit:a1b0149879593df786807afbefb26d4687ebe161. Tom Clegg
03:01 pm Bug #11166: [Crunch2] crunchrun.go should avoid name collisions when creating log collections
11166-log-name-collision @ commit:cb0b666f86ce87d35667e8e23e3775b703a37841 Tom Clegg
02:45 pm Bug #11166: [Crunch2] crunchrun.go should avoid name collisions when creating log collections
LGTM. Peter Amstutz
02:46 pm Task #11196 (Resolved): Review 11166-log-name-collision
Peter Amstutz
02:27 pm Task #11196 (In Progress): Review 11166-log-name-collision
Peter Amstutz

03/06/2017

10:38 pm Story #11139: [Node manager] Expected MemTotal for each cloud node size
Updates on @11139-nodemanager-mem-scale-factor@ branch at commit:b6423b5
Test run: https://ci.curoverse.com/job/deve...
Lucas Di Pentima
08:58 pm Bug #11166 (In Progress): [Crunch2] crunchrun.go should avoid name collisions when creating log c...
Tom Clegg
08:24 pm Task #11212 (Resolved): use ensure_unique_name flag or timestamp
Tom Clegg
03:37 pm Task #11212 (Resolved): use ensure_unique_name flag or timestamp
Tom Clegg
04:20 pm Story #11171: [Nodemanager] Packaging for compute node setup scripts
relevant modules in puppet:
arvados-compute-and-crunch-dispatch-dependencies
arvados-compute-dependencies
arvado...
Nico César
03:35 pm Bug #11138 (Resolved): Protection against running new style docker 1.10+ image on old docker host
Applied in changeset arvados|commit:a4a3227c634d8cfd54a23205be727e910032cbe9. Tom Clegg
02:09 pm Bug #11138: Protection against running new style docker 1.10+ image on old docker host
Thanks! LGTM. Lucas Di Pentima
02:10 pm Task #11197 (Resolved): Review 11138-docker-load-fail
Lucas Di Pentima

03/03/2017

09:50 pm Bug #11168 (Resolved): [API] Use JSON instead of YAML for serialized fields in database
Applied in changeset arvados|commit:660a6143ecf1e777f33bd84183ba9e821e1d7a8e. Tom Clegg
09:23 pm Bug #11168: [API] Use JSON instead of YAML for serialized fields in database
commit:07e4083ea451913b988d77e8e4c926da8ad844a4
"Double-decode serialized fields if database was mangled by downgr...
Tom Clegg
06:22 pm Bug #11168: [API] Use JSON instead of YAML for serialized fields in database
... Peter Amstutz
05:02 pm Bug #11168: [API] Use JSON instead of YAML for serialized fields in database
... Peter Amstutz
04:59 pm Bug #11168: [API] Use JSON instead of YAML for serialized fields in database
... Peter Amstutz
04:45 pm Bug #11168: [API] Use JSON instead of YAML for serialized fields in database
Hold on, now I'm having trouble starting the API server in arvbox. I don't know if something is just corrupted/confu... Peter Amstutz
04:30 pm Bug #11168: [API] Use JSON instead of YAML for serialized fields in database
LGTM @ commit:594e00f Peter Amstutz
05:43 am Bug #11168: [API] Use JSON instead of YAML for serialized fields in database
> I notice that a couple of places have been switched to use SafeJSON, but they still have @require 'oj'@. The speci... Tom Clegg
09:44 pm Bug #11138: Protection against running new style docker 1.10+ image on old docker host
Lucas Di Pentima wrote:
> On line 428: Could it be that "docker load" fails for some reason, and the printed message...
Tom Clegg
07:59 pm Bug #11138: Protection against running new style docker 1.10+ image on old docker host
On line 428: Could it be that "docker load" fails for some reason, and the printed message still say that it exited w... Lucas Di Pentima
06:06 am Bug #11138: Protection against running new style docker 1.10+ image on old docker host
11138-docker-load-fail uses @docker inspect@ (before and after @docker load@) to assure that @docker run aaa123@ will... Tom Clegg
04:31 pm Task #11195 (Resolved): Review 11168-serialize-json
Peter Amstutz
04:22 pm Task #11197 (In Progress): Review 11138-docker-load-fail
Lucas Di Pentima
06:10 am Task #11207 (Resolved): Make docker_install_script more robust
Tom Clegg

03/02/2017

11:06 pm Bug #11071: [Workbench] qr1hi performance tests are broken
Branch 11071-fts-perf-test @ commit:cad4856 takes a stab at using count='none' for full text search in workbench.
...
Radhika Chippada
09:08 pm Bug #11209 (In Progress): stuck keep fuse mounts not cleared by crunch-job
crunch-job attempts to unmount any fuse filesystems that are mounted under $CRUNCH_TMP but it attempts to do so only ... Joshua Randall
08:48 pm Story #11177: [GA4GH] Participate in interoperability challenge
https://www.synapse.org/#!Synapse:syn8080249/wiki/415165 Peter Amstutz
05:43 pm Story #11177 (Resolved): [GA4GH] Participate in interoperability challenge
Peter Amstutz
05:43 pm Task #11193 (Resolved): Submit writeup
Peter Amstutz
03:48 pm Bug #11138 (In Progress): Protection against running new style docker 1.10+ image on old docker host
Tom Clegg
03:48 pm Task #11207 (In Progress): Make docker_install_script more robust
Tom Clegg
03:48 pm Task #11207 (Resolved): Make docker_install_script more robust
Tom Clegg
03:42 pm Bug #11168: [API] Use JSON instead of YAML for serialized fields in database
11168-serialize-json @ commit:766ddd6
I notice that a couple of places have been switched to use SafeJSON, but the...
Peter Amstutz
02:45 pm Story #11139 (In Progress): [Node manager] Expected MemTotal for each cloud node size
Lucas Di Pentima
02:33 pm Task #11195 (In Progress): Review 11168-serialize-json
Peter Amstutz

03/01/2017

09:24 pm Bug #11168: [API] Use JSON instead of YAML for serialized fields in database
11168-serialize-json @ commit:d7c84d69bb62d61bc671b2d5e0ad4ed42dbeb7c0 Tom Clegg
09:06 pm Bug #11168 (In Progress): [API] Use JSON instead of YAML for serialized fields in database
Tom Clegg
09:01 pm Task #11205 (Resolved): Review branch 11071-fts-perf-test
Radhika Chippada
08:51 pm Task #11200 (Resolved): Review 11139-nodemanager-mem-scale-factor
Lucas Di Pentima
08:51 pm Task #11199 (Resolved): Review 10218-record-node-info
Lucas Di Pentima
08:51 pm Task #11198 (New): Review
Peter Amstutz
08:51 pm Task #11197 (Resolved): Review 11138-docker-load-fail
Tom Clegg
08:51 pm Task #11196 (Resolved): Review 11166-log-name-collision
Tom Clegg
08:51 pm Task #11195 (Resolved): Review 11168-serialize-json
Tom Clegg
08:50 pm Task #11194 (New): Review
Peter Amstutz
08:49 pm Task #11193 (Resolved): Submit writeup
Peter Amstutz
08:49 pm Task #11192 (In Progress): Review 9132-dockerclient
Peter Amstutz
08:48 pm Task #11191 (New): Review
Peter Amstutz
08:45 pm Bug #11071 (In Progress): [Workbench] qr1hi performance tests are broken
Tom Morris
08:43 pm Bug #10729: [Crunch2] Propagate error messages if sbatch command succeeds but crunch-run can't ru...
We can also try running "srun" with the same flags, since it is more likely to return useful errors from the subproce... Peter Amstutz
08:37 pm Bug #11190 (New): Containers seem to run more than once, which isn't supposed to happen
Example: tb05z-dz642-eie1eal1059y9bb Tom Clegg
08:28 pm Bug #11166: [Crunch2] crunchrun.go should avoid name collisions when creating log collections
Should be a matter of using the ensure_unique_name flag. Tom Clegg
05:58 pm Bug #11166: [Crunch2] crunchrun.go should avoid name collisions when creating log collections
We've been seeing CR logs with messages like this:... Lucas Di Pentima
08:24 pm Task #11119 (Resolved): Review 7995-keep-balance-docs
Tom Clegg
08:22 pm Task #11164 (Resolved): Review 9277-container-output
Peter Amstutz
08:22 pm Bug #10585 (Resolved): crunch doesn't end jobs when their arv-mount dies
Tom Clegg
08:11 pm Bug #10035 (In Progress): [FUSE] Determine why bcl2fastq doesn't work with writable keep mount
Peter Amstutz
08:11 pm Bug #10035 (Resolved): [FUSE] Determine why bcl2fastq doesn't work with writable keep mount
Peter Amstutz
08:11 pm Feature #6520 (Resolved): [Node Manager] [Crunch2] Take queued containers into account when compu...
Peter Amstutz
08:10 pm Feature #10764 (Resolved): [arvados-ws] Write unit tests
Applied in changeset arvados|commit:2db0c3a44d8f12e3a566c796bdecaa1de150b155. Tom Clegg
02:14 pm Feature #10764: [arvados-ws] Write unit tests
10764-ws-tests
commit:f36162457a771824059fefa098a3ffb89c59263f
https://ci.curoverse.com/job/developer-run-tests/180/
Tom Clegg
08:09 pm Bug #9437 (Resolved): keep-balance doesn't seem to be reducing replication level of blocks
Tom Clegg
08:03 pm Task #11112 (Resolved): unit tests
Tom Clegg
08:03 pm Bug #11186 (Duplicate): Priority 0 state shouldn't be labeled "Ready"
Peter Amstutz
07:28 pm Bug #8113 (Resolved): "Download the full log" in log tab should show the log in the browser, not ...
Tom Clegg
07:00 pm Story #10401 (In Progress): [CWL] Limit expansion of Directory inputs
Peter Amstutz
06:24 pm Story #11185 (New): [Workbench] Add ability to disable job reuse when running a workflow
* Either "re-run container request" button should present a dialog box asking the user if they want job reuse or not,... Tom Morris
05:41 pm Bug #8685: [FUSE] Add timestamp to arv-mount --logfile option
Nico - can you please expand/update the description for this. Tom Morris
05:37 pm Bug #8624: [FUSE] arv-mount `by_tag` directory only shows 100 tags and tags that exist are not ac...
Assigning to Peter for triage/grooming Tom Morris
03:37 pm Task #11108 (Resolved): Review 11015-crunch-run-output-upload
Radhika Chippada
02:14 pm Task #11118 (Resolved): Review 10777-die-if-arv-mount-dies
Tom Clegg
 

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