Activity

From 07/23/2017 to 08/21/2017

08/18/2017

09:17 pm Bug #12055: [node manager] ec2 set tags on create
I have been trying without success to get from AWS docs which EC2 API version is the one that starts including the @T... Lucas Di Pentima
02:30 pm Bug #12055: [node manager] ec2 set tags on create
I have been working on this since yesterday afternoon.
Things accomplished:
* Accessed as root to 4xphq. Check
*...
Lucas Di Pentima
06:25 pm Story #11309: [Crunch2] crunchstat-summary --container UUID should summarize container logs
This LGTM, thanks. Lucas Di Pentima
03:18 pm Story #11309: [Crunch2] crunchstat-summary --container UUID should summarize container logs
Lucas Di Pentima wrote:
> * Failing test: @test_container (tests.test_examples.SummarizeContainer)@
Oops, updated...
Tom Clegg
05:41 pm Task #12143 (In Progress): Exercise test suite with patched llfuse
Tom Clegg
05:41 pm Task #12143 (In Progress): Exercise test suite with patched llfuse
Tom Clegg
02:54 pm Bug #12134: [arv-mount] Fix test deadlock by using new llfuse in test suite
... Tom Clegg
01:40 pm Bug #12134: [arv-mount] Fix test deadlock by using new llfuse in test suite
Tests hung on test_tmp_rewrite (tests.test_tmp_collection.TmpCollectionTest). Destroying fuse mounts had no effect, b... Tom Clegg

08/17/2017

08:50 pm Bug #12134 (In Progress): [arv-mount] Fix test deadlock by using new llfuse in test suite
Tom Clegg
06:12 pm Bug #12134: [arv-mount] Fix test deadlock by using new llfuse in test suite
Even with new llfuse, test_replace (tests.test_unmount.UnmountTest) hangs sometimes, but it wakes up if I look in /pr... Tom Clegg
03:40 pm Bug #11843 (In Progress): Timeout attempting to create job for component gatk-haplotypecaller-cra...
Need to update source:services/api/Gemfile.lock Tom Clegg
02:54 pm Story #11309: [Crunch2] crunchstat-summary --container UUID should summarize container logs
A couple comments:
* Failing test: @test_container (tests.test_examples.SummarizeContainer)@
* File @tools/crunch...
Lucas Di Pentima
01:36 pm Bug #12055: [node manager] ec2 set tags on create
Suggested test strategy:
# log in to 4xphq
# sv stop arvados-node-manager
# virtualenv nodemanager-venv
# . nod...
Peter Amstutz
01:31 pm Bug #12055: [node manager] ec2 set tags on create
apache-libcloud-0.20.2.dev4 @ commit:79ec53df225c98f9e9c5ce67e32715c91b06daeb LGTM
12055-nodemanager-ec2-tags @ co...
Peter Amstutz

08/16/2017

09:57 pm Bug #12134 (In Progress): [arv-mount] Fix test deadlock by using new llfuse in test suite
Peter's patch for the thread-cancel bug has been merged upstream, but there is no new release yet.
Instead of wait...
Tom Clegg
08:15 pm Bug #12122 (Resolved): workbench shouldn't error out when config files are missing if RAILS_GROUP...
Applied in changeset arvados|commit:6f2ce945ee9ad422c3b28fb6433e22d816dddfe1. Anonymous
07:39 pm Bug #12122: workbench shouldn't error out when config files are missing if RAILS_GROUP includes '...
The patch works but.... that entire rake task doesn't exist:... Ward Vandewege
05:06 pm Bug #12122 (Resolved): workbench shouldn't error out when config files are missing if RAILS_GROUP...
Ward Vandewege
07:58 pm Task #10379 (Closed): Review 10359-crunchstat-summary-serial
Tom Clegg
07:56 pm Task #12131 (New): Review
Peter Amstutz
07:55 pm Task #12128 (New): Review
Lucas Di Pentima
07:38 pm Task #12126 (New): API server support for delete
Peter Amstutz
07:36 pm Story #12125 (New): Client support for deleting projects
Peter Amstutz
07:09 pm Bug #6651: "This website is under heavy load" error makes a parsing error
this is a duplicate Nico César
05:04 pm Task #12066 (In Progress): Review 12055-nodemanager-ec2-tags
Peter Amstutz
04:35 pm Story #8937 (Resolved): [SDKs] Write integration test for when arv-put resumes from a cache with ...
Applied in changeset arvados|commit:51fe3482a5253d054e838fb1dcf3982f79650cee. Anonymous
03:10 pm Story #8937: [SDKs] Write integration test for when arv-put resumes from a cache with expired acc...
LGTM Peter Amstutz
04:31 pm Task #11894 (In Progress): Review 11309-crunchstat-summary-containers
Lucas Di Pentima
04:27 pm Bug #12055: [node manager] ec2 set tags on create
Updated libcloud code at commit 79ec53df - branch @apache-libcloud-0.20.2.dev4@
Updated nodemanager at commit:f2019e...
Lucas Di Pentima
03:53 pm Bug #12055: [node manager] ec2 set tags on create
I think you can do this in a one liner:... Peter Amstutz
03:42 pm Bug #12055: [node manager] ec2 set tags on create
Aha, here's an example raw request:... Peter Amstutz
03:27 pm Bug #12055: [node manager] ec2 set tags on create
I'm not sure this is correct:... Peter Amstutz
04:01 am Bug #12055: [node manager] ec2 set tags on create
Updates at commit:f5f91a293
Test run: https://ci.curoverse.com/job/developer-run-tests/416/
* Updated our @libclo...
Lucas Di Pentima
03:09 pm Task #12006 (Resolved): Review 8937-arvput-cached-tokens
Peter Amstutz
02:54 pm Bug #11850: [CWL] arv:RunInSingleContainer should take max() of ResourceRequirements of substeps
Also need to add... Jiayong Li
02:45 pm Story #11309: [Crunch2] crunchstat-summary --container UUID should summarize container logs
11309-crunchstat-summary-containers @ commit:f04ff34e47cc5ff1e625e9a5c1b1b0cbeb810d8c
Child containers are now sor...
Tom Clegg

08/15/2017

10:56 pm Story #11309: [Crunch2] crunchstat-summary --container UUID should summarize container logs
11309-crunchstat-summary-containers @ commit:dc140f2c277a7571669f5bdf492bac6448a0fba0
I added "--container UUID" a...
Tom Clegg
09:53 pm Story #11167: [Workbench] Remove arv-get file download fallback
"workbench should refuse start if keep-web is not configured" <- that's a bad idea. we have all sort of restarts and... Nico César
03:26 pm Bug #12087: [arvados-ws] Memory leak
changes have been made in puppet for qr1hi su92l d8kp5 also e51c5 but puppet is disabled, until we have a downtime ... Nico César
02:44 pm Story #8937: [SDKs] Write integration test for when arv-put resumes from a cache with expired acc...
Updates at commit:81352ba32
Test run: https://ci.curoverse.com/job/developer-run-tests/414/
Realized that as part...
Lucas Di Pentima

08/14/2017

05:05 pm Bug #12113: mandatory keep_web configuration missing from workbench install instructions
I see now that it is mentioned much much later in the install guide under http://doc.arvados.org/install/install-keep... Joshua Randall
05:02 pm Bug #12113 (New): mandatory keep_web configuration missing from workbench install instructions
It seems that one of keep_web_url or keep_web_download_url are now mandatory in order for workbench to start, but the... Joshua Randall
01:36 pm Bug #10349: [DOC] add cookbook section with code snippets
I started writing out some code snippits for operating on container requests based on the scripts at https://github.c... Peter Amstutz

08/11/2017

08:58 pm Story #11309 (In Progress): [Crunch2] crunchstat-summary --container UUID should summarize contai...
Tom Clegg
08:38 pm Story #9668 (Resolved): [Crunch2] [Workbench] Select a Javascript client framework for future dev...
Tom Clegg
06:05 pm Story #11545 (Resolved): Create a CWL stress test for node manager
Applied in changeset arvados|commit:10402f74ccdae453ae353c389a02c0415adcf1e7. Peter Amstutz
05:57 pm Task #11757 (Resolved): Review 11545-stress-test
Peter Amstutz
05:46 pm Bug #12107 (New): [API] jobs.create should not do slow git operations
It's typical for jobs.create to take ~6 seconds, with the database only accounting for about 75ms.
Our "copy commi...
Tom Clegg
03:30 pm Story #8937: [SDKs] Write integration test for when arv-put resumes from a cache with expired acc...
Lucas Di Pentima wrote:
> Updates at commit:7049888ba
> Test run: https://ci.curoverse.com/job/developer-run-tests/...
Peter Amstutz
03:19 pm Bug #10035 (Resolved): [FUSE] Determine why bcl2fastq doesn't work with writable keep mount
This works now & is used in production. Peter Amstutz
03:15 pm Bug #12100 (Resolved): Update cwltool for secondaryFile handling changes
Applied in changeset arvados|commit:33f91bb5a4ed93e9cadf21920526daa53351dbea. Peter Amstutz

08/10/2017

09:31 pm Story #8937: [SDKs] Write integration test for when arv-put resumes from a cache with expired acc...
Updates at commit:7049888ba
Test run: https://ci.curoverse.com/job/developer-run-tests/413/
Made suggested change...
Lucas Di Pentima
08:01 pm Story #8937: [SDKs] Write integration test for when arv-put resumes from a cache with expired acc...
Looking at _cache_is_valid
* Instead of splitting the manifest into lines, could you use re.MULTILINE to find the ...
Peter Amstutz
07:55 pm Task #12006 (In Progress): Review 8937-arvput-cached-tokens
Peter Amstutz
02:11 pm Bug #12055 (In Progress): [node manager] ec2 set tags on create
Lucas Di Pentima
01:35 pm Story #11167 (Resolved): [Workbench] Remove arv-get file download fallback
Applied in changeset arvados|commit:d0a4adabafa4d132ab2333338c941acc57ca82fb. Lucas Di Pentima
11:58 am Story #11167: [Workbench] Remove arv-get file download fallback
I've tried removing it (commit:3224524c1a2d6790322448565cb5a16ea0bcb874) and some tests started to fail: https://ci.c... Lucas Di Pentima
01:32 pm Task #11937 (Resolved): Review 11167-wb-remove-arvget
Lucas Di Pentima

08/09/2017

11:47 pm Story #8937: [SDKs] Write integration test for when arv-put resumes from a cache with expired acc...
Updates at commit:7b93dc26e
Test run: https://ci.curoverse.com/job/developer-run-tests/409/
* Updated @arv-put@ c...
Lucas Di Pentima
02:19 pm Story #8937 (In Progress): [SDKs] Write integration test for when arv-put resumes from a cache wi...
Lucas Di Pentima
08:37 pm Task #12001 (Resolved): Review 11925-nodemanager-watchdog-test
Peter Amstutz
07:51 pm Bug #12100 (Resolved): Update cwltool for secondaryFile handling changes
Peter Amstutz
06:58 pm Task #12094 (Resolved): Review 12093-cwl-project-uuid
Peter Amstutz
06:21 pm Task #12094 (In Progress): Review 12093-cwl-project-uuid
Tom Clegg
06:12 pm Task #12094 (Resolved): Review 12093-cwl-project-uuid
Peter Amstutz
06:55 pm Bug #12093 (Resolved): arvados-cwl-runner doesn't propogate --project-uuid to submitting container
Applied in changeset arvados|commit:651e87d8d97edebd8d3cd0325dbd15d6dac0cd1c. Peter Amstutz
06:52 pm Bug #12093: arvados-cwl-runner doesn't propogate --project-uuid to submitting container
Tom Clegg wrote:
> LGTM.
>
> A more general comment: The test suite seems heavy on the copy-paste. Why do all the...
Peter Amstutz
06:30 pm Bug #12093: arvados-cwl-runner doesn't propogate --project-uuid to submitting container
LGTM.
A more general comment: The test suite seems heavy on the copy-paste. Why do all these test cases have "exce...
Tom Clegg
05:21 pm Bug #12093 (In Progress): arvados-cwl-runner doesn't propogate --project-uuid to submitting conta...
Peter Amstutz
06:38 pm Bug #12078 (Resolved): [crunch1] [crunch-job] Perl error "API method ... failed: hash- or arrayre...
Tom Clegg
05:10 pm Story #11167: [Workbench] Remove arv-get file download fallback
IIRC this change means "include ActionController::Live" isn't needed any more in CollectionsController.
LGTM, than...
Tom Clegg
01:45 pm Bug #12087 (Resolved): [arvados-ws] Memory leak
Applied in changeset arvados|commit:e4a35f3914481226a2a4ff57618bc486839aa2ea. Tom Clegg
01:39 pm Bug #12087: [arvados-ws] Memory leak
LGTM. Peter Amstutz
01:43 pm Task #12088 (Resolved): Review 12087-ws-busy-loop
Tom Clegg
01:37 pm Task #12088 (In Progress): Review 12087-ws-busy-loop
Peter Amstutz

08/08/2017

08:31 pm Story #11167: [Workbench] Remove arv-get file download fallback
Updates at commit:02a0ac50b
Test run: https://ci.curoverse.com/job/developer-run-tests/408/
Using @curl@ from the...
Lucas Di Pentima
07:22 pm Bug #12093 (Resolved): arvados-cwl-runner doesn't propogate --project-uuid to submitting container
Bryan Cosca
06:54 pm Task #12092 (New): [arv-mount] Add support Trashed event for projects
Tom Morris
06:52 pm Task #12091 (New): [Workbench] Add Projects tab to trash page
- Can the user navigate the project hierarchy for the projects which are in the trash? Tom Morris
06:35 pm Feature #12090 (New): Collections/data access API
Support operations like
* list files/dirs in collection
* add file/dir to collection
* write/truncate an existing ...
Tom Clegg
06:29 pm Story #12089 (New): Javascript SDK
Desired facilities:
* Upload a local file ("File":https://developer.mozilla.org/en-US/docs/Web/API/File or "FileRead...
Tom Morris
05:09 pm Task #12088 (Resolved): Review 12087-ws-busy-loop
Tom Clegg
05:09 pm Bug #12087 (In Progress): [arvados-ws] Memory leak
12087-ws-busy-loop @ commit:b61a80b93308582b91e89561dc373a1ea33658a9
Tom Clegg
04:57 pm Bug #12087: [arvados-ws] Memory leak
SIGQUIT revealed many (thousands?) of goroutines like this... Tom Clegg
04:06 pm Bug #12087: [arvados-ws] Memory leak
One way for a goroutine to get stuck in a busy loop is to read from a closed channel (which returns immediately) and ... Tom Clegg
04:01 pm Bug #12087 (Resolved): [arvados-ws] Memory leak
arvados-ws process caught using 40GB rss, 48GB virt, ~75% cpu.
debug.json:...
Tom Clegg

08/07/2017

10:11 pm Story #11167: [Workbench] Remove arv-get file download fallback
Updates at commit:57647945b08a74bab02fed6adf947eb9adb8321f
Test run: https://ci.curoverse.com/job/developer-run-test...
Lucas Di Pentima
04:05 pm Feature #3829 (Duplicate): [Crunch] Email notification when pipeline finishes, depending on user ...
Tom Morris
03:49 pm Bug #12078 (In Progress): [crunch1] [crunch-job] Perl error "API method ... failed: hash- or arra...
Tom Clegg
02:46 pm Bug #12082 (New): [SDKs] Improve wording of Keep error messages in Python SDK
This is what we have:
arvados.errors.KeepReadError: failed to read 33b13624f658eef3a4e5da5bcae81487+67108864+A8d00...
Tom Clegg

08/05/2017

04:07 pm Bug #11136: Nginx config should speak JSON when returning its own response for unproxyable API re...
The linked #6651 contains one recipe for fixing this. Tom Morris

08/04/2017

06:41 pm Bug #12078: [crunch1] [crunch-job] Perl error "API method ... failed: hash- or arrayref expected"
... Tom Clegg
06:32 pm Bug #12078: [crunch1] [crunch-job] Perl error "API method ... failed: hash- or arrayref expected"
12078-perl-bool-params @ commit:64b837f87103a59efb6d4dac2b8dfa3c7c40c09a
Tom Clegg
06:19 pm Bug #12078: [crunch1] [crunch-job] Perl error "API method ... failed: hash- or arrayref expected"
debian:8 perl v5.20.2 libjson-perl 2.61-1... Tom Clegg
02:22 pm Bug #12078: [crunch1] [crunch-job] Perl error "API method ... failed: hash- or arrayref expected"
There were successful API calls:... Tom Clegg
01:16 pm Bug #12078 (Resolved): [crunch1] [crunch-job] Perl error "API method ... failed: hash- or arrayre...
Test pipeline fails on first job. Pipeline log ends with... Tom Clegg
01:52 pm Bug #11925: [Nodemanager] Fix unit tests
Updates @ commit:597b742a6 LGTM.
Some tests at @test_daemon.py@ are failing once in a while, the rest seem to be r...
Lucas Di Pentima

08/03/2017

07:37 pm Bug #12077 (New): Subprojects tab has wrong Description column
If I add a description for a subproject, the listing on the Subprojects tab just contains the single word "Project" f... Tom Morris
01:19 pm Bug #11925: [Nodemanager] Fix unit tests
Another systemic issue:
Python mocks seem to be unreliable when shadowing builtin functions (like time.time()) wit...
Peter Amstutz

08/02/2017

08:07 pm Bug #12073 (New): [Node manager] Clean up stale arvados node records
If a node goes away without node manager doing clean_arvados_node(), it will remain in the nodes table tying up a slo... Peter Amstutz
07:48 pm Task #12069 (New): Review
Lucas Di Pentima
07:45 pm Bug #12057 (Resolved): [node manager] boot nodes for jobs marked (Priority)
Applied in changeset arvados|commit:962a6b5be87305054a87b665dcc85d144840bb98. Peter Amstutz
05:30 am Bug #12057: [node manager] boot nodes for jobs marked (Priority)
Does this mean that #11545 is in progress? Tom Morris
05:28 am Bug #12057 (In Progress): [node manager] boot nodes for jobs marked (Priority)
Tom Morris
07:40 pm Task #12067 (New): Instrumentation
Peter Amstutz
07:40 pm Task #12066 (In Progress): Review 12055-nodemanager-ec2-tags
Peter Amstutz
07:33 pm Task #12065 (New): Review
Peter Amstutz
07:18 pm Bug #11925: [Nodemanager] Fix unit tests
... Peter Amstutz
07:03 pm Bug #11925 (In Progress): [Nodemanager] Fix unit tests
Peter Amstutz
04:50 pm Bug #11925: [Nodemanager] Fix unit tests
11925-nodemanager-watchdog-test @ commit:0ac98ea67157ab1a6d92b02e59b8491d90dd1f79
Fixes flaky tests in test_compu...
Peter Amstutz
03:47 pm Bug #11925: [Nodemanager] Fix unit tests
Some structural reasons for failing node manager tests:
# Tests were written with the assumption that certain comm...
Peter Amstutz
06:55 pm Bug #10584: [FUSE] high memory consumption (possible leak) in long-running arv-mount
* Look at user interaction history with keep
* Track metrics
* Instrumentation to report memory usage / ownership
Peter Amstutz
06:48 pm Task #11827 (Resolved): Review
Tom Clegg
06:46 pm Bug #12010 (Closed): [keep-web] tests hang
Tom Clegg
03:48 pm Bug #12010: [keep-web] tests hang
Tried & failed to reproduce this locally using --repeat 32 and high system load. Haven't seen it on Jenkins again.
Tom Clegg
06:37 pm Story #11997 (Resolved): [Spike] Investigate CI packaging improvements
Tom Clegg
01:58 pm Bug #12058: [node manager] failing test
Yesterday I run the unit tests on my local environment, and didn't got the test @test_unsatisfiable_jobs@ to fail.
O...
Lucas Di Pentima
01:43 pm Bug #12061 (New): [Node manager] Fix flaky integration tests
test_probe_quota failed - https://ci.curoverse.com/job/run-tests-services-nodemanager/515/consoleText
test_single_no...
Tom Clegg
01:34 pm Story #11545 (In Progress): Create a CWL stress test for node manager
Peter Amstutz
05:40 am Bug #12055: [node manager] ec2 set tags on create
I'm pretty sure that this is a duplicate and that someone (Lucas?) was already working on fixing it, but I'll add it ... Tom Morris

08/01/2017

07:02 pm Story #12060 (New): [CWL] Run directly from git
Goal: have arvados-cwl-runner execute CWL files from a git branch as written, avoiding the "packing" step.
Executi...
Peter Amstutz
05:46 pm Bug #11925: [Nodemanager] Fix unit tests
I don't know if it's related, but I'm seeing this test fail almost every run:... Lucas Di Pentima
01:31 pm Bug #11925: [Nodemanager] Fix unit tests
11925-nodemanager-watchdog-test @ commit:f313294f95e55f595ace70e2a614557c0428f2da
The fix (adding an extra wait to...
Peter Amstutz
05:45 pm Bug #12058 (New): [node manager] failing test
... Peter Amstutz
05:33 pm Bug #12057: [node manager] boot nodes for jobs marked (Priority)
Peter Amstutz wrote:
> 12057-nodemanager-priority @ commit:43afe5cf4364c64b5022f912eaba2240c7cb0999
LGTM
Tom Clegg
05:33 pm Bug #12057: [node manager] boot nodes for jobs marked (Priority)
12057-nodemanager-priority @ commit:43afe5cf4364c64b5022f912eaba2240c7cb0999 Peter Amstutz
04:54 pm Bug #12057 (Resolved): [node manager] boot nodes for jobs marked (Priority)
While running the node manager stress test, I noticed the following behavior from slurm:... Peter Amstutz
01:44 pm Task #11759 (Resolved): Review 7475-nodemgr-unsatisfiable-job-comms
Peter Amstutz
01:42 pm Bug #12055 (In Progress): [node manager] ec2 set tags on create
https://issues.apache.org/jira/browse/LIBCLOUD-930
ec2 node_create(ex_metadata) uses TagSpecification.N &rarr; htt...
Peter Amstutz

07/31/2017

06:29 pm Bug #11158 (Resolved): [FUSE] Hang on simple FUSE operation and when logging in again later
Peter Amstutz
02:55 pm Story #7475 (Resolved): [Node manager] Better communication when job is unsatisfiable
Applied in changeset arvados|commit:c0e203e7f3e9e40736eac63cbe440d5e46e379c0. Lucas Di Pentima

07/29/2017

03:05 pm Story #7475: [Node manager] Better communication when job is unsatisfiable
Sorry, I thought I tested it before pushing.
Updated at commit:3e46aaf64
Test run: https://ci.curoverse.com/job/d...
Lucas Di Pentima
02:15 pm Story #12037 (Resolved): [CWL] Pass conformance for v1.0.1
Applied in changeset arvados|commit:386e1eefaac2021805f73732b10e9f543c221593. Peter Amstutz
01:40 pm Task #12040 (Resolved): Review 12037-cwl-v1.0.1
Lucas Di Pentima

07/28/2017

09:14 pm Story #12037: [CWL] Pass conformance for v1.0.1
All conformance tests now worked for me.
LGTM, thanks!
Lucas Di Pentima
07:54 pm Story #12037: [CWL] Pass conformance for v1.0.1
So the issue is that it is missing a Docker image tagged arvados/jobs:latest, compounded by the a logging bug that ob... Peter Amstutz
03:32 pm Story #12037: [CWL] Pass conformance for v1.0.1
Adding environment information.
@pip freeze@ returns:...
Lucas Di Pentima
02:11 pm Story #12037: [CWL] Pass conformance for v1.0.1
Attaching log files from a failed conformance test run on my arvbox setup Lucas Di Pentima
01:07 pm Story #12037: [CWL] Pass conformance for v1.0.1
You need to cd in to the "v1.0" directory before you paste the command line.
Peter Amstutz
08:01 pm Task #11191 (Resolved): Review 11158-fuse-projects
Peter Amstutz
06:19 pm Task #12001 (In Progress): Review 11925-nodemanager-watchdog-test
Lucas Di Pentima
05:49 pm Bug #11925: [Nodemanager] Fix unit tests
The WatchdogActorTest still fails for me in my dev env, as before (this is the only nodemanager test that always fail... Radhika Chippada
01:53 pm Bug #11925: [Nodemanager] Fix unit tests
11925-nodemanager-watchdog-test @ commit:97bb15198ff6071d656d461b27e1055d84826d36 Peter Amstutz
05:25 pm Bug #12051 (New): lost job log
for https://workbench.e51c5.arvadosapi.com/pipeline_instances/e51c5-d1hrv-prpopnuyn8u43ej 55001604176962 interpretati... Bryan Cosca
04:33 pm Bug #11158: [FUSE] Hang on simple FUSE operation and when logging in again later
LGTM
-Happened to notice "if new_name" should probably also be changed to "if new_name is not None" here in fusedi...
Tom Clegg
03:30 pm Feature #11906 (Resolved): Basic authenticated http health check ("ping") for each system service
Applied in changeset arvados|commit:dfc4c2c74dc7a31ff0c0d307846b7e9525fdcf0e. Radhika Chippada
03:26 pm Feature #11906: Basic authenticated http health check ("ping") for each system service
Reviewed updates at commit:8ae04f9f4d252a99985d7ac047413318d2f1068b for @nodemanager@. Looks good to me, thanks! Lucas Di Pentima
03:26 pm Task #12049 (Resolved): Review branch 11906-nodemanager-ping
Lucas Di Pentima
01:07 pm Task #12049 (In Progress): Review branch 11906-nodemanager-ping
Lucas Di Pentima

07/27/2017

11:05 pm Task #12049 (Resolved): Review branch 11906-nodemanager-ping
Radhika Chippada
09:27 pm Story #12037: [CWL] Pass conformance for v1.0.1
Reviewing updates at commit:0c817f2f9
Followed guide on https://dev.arvados.org/issues/11948#note-4 to run conform...
Lucas Di Pentima
05:38 pm Bug #12047: CWL should check yml to make sure pdh's exist
samir had the chr2vcf missing a b
"inputvcf": {
"class": "File",
"location": "keep:b7c09923c1aad2fe0e4...
Bryan Cosca
05:36 pm Bug #12047 (New): CWL should check yml to make sure pdh's exist
Changing the name because this pipeline shouldn't have run in the first place if one letter was off in the pdh. Bryan Cosca
05:34 pm Bug #12047 (Closed): CWL should check yml to make sure pdh's exist
samir said he missed one letter in the pdh. Bryan Cosca
05:27 pm Bug #12047 (New): CWL should check yml to make sure pdh's exist
https://workbench.e51c5.arvadosapi.com/jobs/e51c5-8i9sb-tll53ooc5fb8bn8
a script parameter is "keep:7c09923c1aad2f...
Bryan Cosca
05:33 pm Task #12040 (In Progress): Review 12037-cwl-v1.0.1
Lucas Di Pentima
04:39 pm Story #11167: [Workbench] Remove arv-get file download fallback
Lucas, a couple more comments in the meantime:
* application.default.yml => can you add “.com” to the test config ...
Radhika Chippada
03:29 pm Story #7475: [Node manager] Better communication when job is unsatisfiable
... Peter Amstutz
02:53 pm Story #11997 (In Progress): [Spike] Investigate CI packaging improvements
Tom Clegg
02:51 pm Task #11998 (Resolved): Review branch 11995-collecion-filetypes
Radhika Chippada
02:51 pm Task #12041 (Resolved): Review branch 11906-keep-web-ping
Radhika Chippada
01:21 pm Task #12041 (In Progress): Review branch 11906-keep-web-ping
Tom Clegg
02:24 pm Bug #11158: [FUSE] Hang on simple FUSE operation and when logging in again later
11158-fuse-projects commit:26e095318c7c368089ea368e6e4854b62a6c7830
Based on findings in note 16:
* Reverted ch...
Peter Amstutz
01:54 pm Task #12043 (Resolved): Review branch 11906-arv-git-httpd-ping
Lucas Di Pentima
01:28 pm Task #12043 (In Progress): Review branch 11906-arv-git-httpd-ping
Lucas Di Pentima
01:54 pm Feature #11906: Basic authenticated http health check ("ping") for each system service
Updates at commit:dc929c778 - branch @11906-arv-git-httpd-ping@ LGTM, please merge. Lucas Di Pentima

07/26/2017

09:19 pm Feature #11906: Basic authenticated http health check ("ping") for each system service
I pushed a commit removing the func and servemux, and calling the health handler's ServeHTTP() directly instead.
T...
Tom Clegg
05:51 pm Feature #11906: Basic authenticated http health check ("ping") for each system service
Branch 11906-keep-web-ping @ commit:1af8267a0d11ad9f986aec5ec7853299f3cfeb0e implements /_health/ping for keep-web.
...
Radhika Chippada
08:32 pm Task #12043 (Resolved): Review branch 11906-arv-git-httpd-ping
Radhika Chippada
08:09 pm Story #11167: [Workbench] Remove arv-get file download fallback
Updates at commit:2918ed81152a1fe8607f433e36dceddc1cb78f74
Test run: https://ci.curoverse.com/job/developer-run-test...
Lucas Di Pentima
06:13 pm Bug #11850: [CWL] arv:RunInSingleContainer should take max() of ResourceRequirements of substeps
Suggested behavior:
* The toplevel workflow may have a resource requirement which may be an expression or a consta...
Peter Amstutz
05:49 pm Task #12041 (Resolved): Review branch 11906-keep-web-ping
Radhika Chippada
05:13 pm Task #12040 (Resolved): Review 12037-cwl-v1.0.1
Peter Amstutz
02:46 pm Story #12037 (In Progress): [CWL] Pass conformance for v1.0.1
Peter Amstutz
02:46 pm Story #12037 (Resolved): [CWL] Pass conformance for v1.0.1
Peter Amstutz

07/25/2017

07:49 pm Story #4442 (Resolved): [API] [Workbench] Site-wide regex searching
Full text search meets the bulk of this need. Tom Morris
06:51 pm Story #12032: Allow projects to be deleted (ie placed in the trash can)
Implementation thoughts:
* Add is_trashed flag to groups (projects)
* Permission graph (recursive view) needs an is...
Tom Clegg
06:39 pm Story #12032 (New): Allow projects to be deleted (ie placed in the trash can)
As a user, I would like deleted projects to be placed in the Trash rather than cluttering my Home project and when th... Tom Morris
02:22 pm Feature #12028 (New): Be able to create a new collection based on a subdirectory in workbench
Right now you can only click on files to create a new collection, users should also be able to click on directories. Bryan Cosca

07/24/2017

09:24 pm Bug #12026 (New): crunchstat-summary gives invalid min_cores recommendation
This recommendation doesn't make sense from a couple of points of view:
### Summary for cwl-runner (su92l-8i9sb-ll...
Tom Morris
09:02 pm Bug #11850: [CWL] arv:RunInSingleContainer should take max() of ResourceRequirements of substeps
Taking into account https://dev.arvados.org/issues/11850#note-10, I think the rule should be rephrased as follows.
...
Jiayong Li
06:58 pm Task #12021 (Resolved): Review branch 11906-keepproxy-ping
Lucas Di Pentima
06:16 pm Task #12021 (Resolved): Review branch 11906-keepproxy-ping
Radhika Chippada
06:57 pm Feature #11906: Basic authenticated http health check ("ping") for each system service
Updates at commit:91f976b99d4e7f00d2c1fbfee75812c3b1b780c6 - branch @11906-keepproxy-ping@ LGTM, thanks! Lucas Di Pentima
02:53 pm Bug #12020 (New): [Tests] Flaky test in Python SDK tests.test_events.WebsocketTest.test_subscribe...
... Tom Clegg
02:11 pm Story #11167: [Workbench] Remove arv-get file download fallback
I didn't spend much time looking at the updates, but here are a couple initial comments.
* collections_controller ...
Radhika Chippada
02:10 pm Task #11937 (In Progress): Review 11167-wb-remove-arvget
Radhika Chippada
 

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