156
2017-03-29 sprint
2017-03-16
2017-03-29
  • crunchstat-summary should work on arvados-cwl-runner --submit pipelines
    10472
    Bug
    1
    In Progress
    2
    0.5
    0.5
    156
    -c-a
    36
  • Reduce amount of parallelism in crunchstat-summary
    10359
    Bug
    1
    In Progress
    2
    0.5
    0.5
    156
    -c-a
    36
  • [CWL] Limit expansion of Directory inputs
    10401
    Story
    6
    In Progress
    2
    2.0
    2.0
    156
    -c-a
    36
  • [Crunch2] crunch-run uses official docker client library
    9132
    Story
    6
    In Progress
    2
    1.0
    1.0
    156
    11
    -c-a
    36
  • [Crunch] Socket timed out on send/recv operation causes pipeline failure
    4124
    Bug
    1
    In Progress
    2
    156
    -c-a
    36
  • stuck keep fuse mounts not cleared by crunch-job
    11209
    Bug
    1
    In Progress
    2
    156
    -c-a
    36
  • [API] Upgrade API server to Rails 4.2
    7709
    Feature
    2
    In Progress
    2
    2.0
    2.0
    156
    -c-a
    36
  • [SDKs] arv-get and arv-ls should use new PySDK Collection APIs
    7824
    Story
    6
    In Progress
    2
    1.0
    1.0
    156
    -c-a
    36
  • [Workbench] Delete and rename files in collections
    3821
    Story
    6
    In Progress
    2
    2.0
    2.0
    156
    -c-a
    36
  • Containers seem to run more than once, which isn't supposed to happen
    11190
    Bug
    1
    New
    1
    156
    -c-a
    36
  • Dependencies in Ubuntu 16.04 (xenial) offer to REMOVE arvados-node-manager
    11236
    Bug
    1
    New
    1
    156
    -c-a
    36
  • [DOC] add cookbook section with code snippets
    10349
    Bug
    1
    New
    1
    0.5
    0.5
    156
    -c-a
    36
  • [FUSE] Hang on simple FUSE operation and when logging in again later
    11158
    Bug
    1
    New
    1
    156
    -c-a
    36
  • Nginx config should speak JSON when returning its own response for unproxyable API requests
    11136
    Bug
    1
    New
    1
    1.0
    1.0
    156
    -c-a
    36
  • [API] Delete rows from logs table when they exceed a configured threshold
    11065
    Story
    6
    Resolved
    3
    2.0
    2.0
    156
    -c-a
    36
  • [Docs] [arvados-ws] make the arvados-ws documentation official, remove all mentions of the old puma websockets setup
    10766
    Feature
    2
    Resolved
    3
    0.5
    0.5
    156
    -c-a
    36
  • [systemd] Always restart exited services, even after 3 startup failures
    11221
    Bug
    1
    Resolved
    3
    0.5
    0.5
    156
    -c-a
    36
  • googleapiclient.errors.InvalidJsonError retrieving discovery document
    10669
    Bug
    1
    Resolved
    3
    1.0
    1.0
    156
    -c-a
    36
  • Stale squeue processes on c97qk caused by "crunch-dispatch --jobs"
    11170
    Bug
    1
    Resolved
    3
    156
    -c-a
    36
  • [Crunchv2] Option to use host networking for containers
    11255
    Feature
    2
    Resolved
    3
    0.5
    0.5
    156
    -c-a
    36
  • [Crunch2] Gather and record cloud/physical node information for each container
    10218
    Feature
    2
    Resolved
    3
    1.0
    1.0
    156
    11
    -c-a
    36
  • [Workbench] Hide the "idle/busy nodes" part of the dashboard if crunch1 APIs are disabled
    11014
    Bug
    1
    Resolved
    3
    0.5
    0.5
    156
    -c-a
    36
  • [Nodemanager] Need reason to set DOWN state
    11288
    Bug
    1
    Resolved
    3
    0.5
    0.5
    156
    -c-a
    36
  • [Node manager] backtrace on node shutdown
    11254
    Bug
    1
    Resolved
    3
    0.5
    0.5
    156
    -c-a
    36
157
2017-04-12 sprint
2017-03-30
2017-04-12
  • Support Python3 for arvados-python-client & command line utilities
    11308
    Story
    6
    New
    1
    157
    -c-a
    36
  • [Crunch2] Support stdin redirection
    8465
    Feature
    2
    New
    1
    1.0
    1.0
    157
    11
    -c-a
    36
  • [Crunch2] Provenance graph for Container Request
    10111
    Bug
    1
    New
    1
    2.0
    2.0
    157
    11
    -c-a
    36
  • [Workbench] Improve user page group memberships management
    9441
    Story
    6
    New
    1
    157
    -c-a
    36
  • [Documentation] Write a Crunch2 wiki page
    7543
    Story
    6
    New
    1
    1.0
    1.0
    157
    -c-a
    36
  • [Documentation] Write a Crunch wiki page
    7542
    Story
    6
    New
    1
    1.0
    1.0
    157
    -c-a
    36
  • [API] Fix config file race condition and improve test cases for DNS update hooks
    6304
    Bug
    1
    New
    1
    0.5
    0.5
    157
    -c-a
    36
  • Update Pipeline Optimization wiki with CWL/Crunchv2
    11285
    Story
    6
    New
    1
    157
    -c-a
    36
71
Arvados Future Sprints
2020-01-01
2020-01-02
  • [Crunch2] crunchstat-summary --container UUID should summarize container logs
    11309
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Trailing space on string pasted into search box should not cause "Oops request failed"
    11278
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Remove arv-get file download fallback
    11167
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Add ability to disable job reuse when running a workflow
    11185
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Keep] Support multiple storage tiers
    11184
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Crunch2] [Workbench] Show slurm queue position of containers submitted to slurm but not yet running
    11146
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [keep-web] configurable block cache size
    10998
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [DOC] update documentation to list ubuntu1604
    10988
    Feature
    2
    New
    1
    71
    -c-a
    36
  • Switch from goamz to aws-sdk-go
    10477
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Crunch2] [API] return a more specific 422 error message when a client calls containers#unlock without having the lock
    10705
    Bug
    1
    In Progress
    2
    71
    11
    -c-a
    36
  • [Crunch2] Propagate error messages if sbatch command succeeds but crunch-run can't run (or can't log to the Arvados API)
    10729
    Bug
    1
    New
    1
    71
    11
    -c-a
    36
  • [FUSE] Determine why bcl2fastq doesn't work with writable keep mount
    10035
    Bug
    1
    In Progress
    2
    1.0
    1.0
    71
    -c-a
    36
  • [Node Manager] Doesn't kill itself when unhandled exceptions are raised during actor setup
    8871
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Update job stats to be more useful to end user
    10679
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Better presentation of container request "mounts"
    10645
    Story
    6
    New
    1
    1.0
    1.0
    71
    11
    -c-a
    36
  • [Python SDK] Document undocumented methods in RichCollectionBase
    10650
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [FUSE] high memory consumption (possible leak) in long-running arv-mount
    10584
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Integrate CI::Reporter to provide test output in JUnit XML format
    10525
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] `arv keep docker` supports `repo:tag` image name scheme
    8333
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • Add varchar_pattern_ops to all relevant PostgreSQL UUID indexes
    10354
    Story
    6
    New
    1
    71
    -c-a
    36
  • Output glob "./" doesn't work as output from CWL workflow
    10308
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] [Workbench] Error out when unrecognized keys appear in config files
    10594
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Go programs] Error out when unrecognized keys appear in config files
    10282
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Arvados should be able to cat/zcat files in collections easily
    10191
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDK] Writable file-like interface for collections in Go SDK
    10996
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Node Manager] Support ephemeral additional storage for Azure node types that do not have sufficient instance storage
    10183
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SSO] sso server adds multiple records without checking
    10167
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Automate starting/enabling services during Workbench and API package installation
    9960
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Ability to add group from Groups admin page
    10142
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL][Crunch][Crunch2] crunchrunner should ignore hidden directories when uploading to keep
    9965
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL][Crunch2][Crunch] crunchrunner should use CWL globs to output data to keep
    9964
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] Upgrade llfuse to 1.1, fix deadlock in test suite
    10805
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] arv-mount installation documentation not working
    9870
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] performance issues stat() in python
    9732
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] Undelete collections by moving them out of the TrashDirectory
    9591
    Story
    6
    New
    1
    71
    -c-a
    36
  • [keep-balance] Refuse to act when planning to delete data above an admin-specified threshold
    8179
    Story
    6
    New
    1
    71
    -c-a
    36
  • [keep-balance] Do not delete blocks referenced by collections with replication_desired=0
    9967
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench UI] Pipeline instances should have a link to view the CWL file used.
    9802
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [CWL] Creating intermediate folders in working directory (fails in cwl-runner)
    9755
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] UI should advance to new step when user submits their input
    9750
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] Secondary files entering into Arvados automatically
    9747
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [CWL] cwl-runner parses nested arrays repetively
    9588
    Bug
    1
    Resolved
    3
    71
    -c-a
    36
  • [keep-rsync] Rename "replications" to "replicas"
    9443
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [keep-balance] "Expedited delete" tool: perform garbage collection on some specific (recently deleted) collections, bypassing usual GC race protections
    9364
    Feature
    2
    New
    1
    3.0
    3.0
    71
    -c-a
    36
  • [CWL] arvados-cwl-runner should reuse the most recent run
    9362
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] Jobs crash when arvados/jobs:latest is not suitable to run CWL jobs
    9659
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch2] crunch-dispatch-slurm can't successfully dispatch work when run from a directory it can't write to
    9630
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch2] Document/fix handling of collections with non-nil expires_at field
    9278
    Story
    6
    In Progress
    2
    1.0
    1.0
    71
    11
    -c-a
    36
  • [Data manager] Verbose reporting
    8912
    Story
    6
    In Progress
    2
    0.5
    0.5
    71
    -c-a
    36
  • [Node Manager] huge virtual memory size
    8798
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Times out before API server loading active pipeline instances
    8504
    Bug
    1
    Feedback
    4
    0.5
    0.5
    71
    -c-a
    36
  • [FUSE] rmdir on CollectionDirectory sets expires_at
    9592
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] Trash directory to list, inspect, and un-trash trashed collections
    9590
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] Don't display expiring collections in regular collection listings
    9584
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] llfuse thread can stay alive after umount, hanging tests
    9457
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] Make .arvados#collection available in collection subdirectories
    9245
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [FUSE] .arvados#collection is missing or outdated after writing inside collection
    9244
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] Add timestamp to arv-mount --logfile option
    8685
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] arv-mount `by_tag` directory only shows 100 tags and tags that exist are not accessible
    8624
    Bug
    1
    New
    1
    71
    -c-a
    36
  • get rid of dependencies python-pyasn1 python-pyasn1-modules
    7977
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] arv-mount is too slow for strelka
    7747
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Aggressively throttles node creation requests when the cloud region is full
    7479
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [NodeManager] CloudNodeListMonitorActor stopped reporting, and logs are not helpful enough to diagnose
    7667
    Bug
    1
    In Progress
    2
    1.0
    1.0
    71
    -c-a
    36
  • [Deployment] Upgrading Rails packages on CentOS uninstalls them
    8371
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] PySDK fails to load CAs for SSL verification when run inside Conda
    8669
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] crunch-job can miss the final log output of a job
    8721
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] When we give up trying to write a block, the next operation on the file should fail
    8148
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Bad URL quoting/parsing in File links from the pipeline template Components tab
    9156
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Python SDK] Add a Collection method to efficiently concatenate files
    9136
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Crunch] Limit maximum wait time between retries
    8774
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Crunch] [UX] Standard excepthook to help debug job problems
    7328
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] arv-copy fails to copy a Docker image specified with repo:tag syntax
    8315
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] The "Log" tab should have an notification that the job has been queued
    8901
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Less logging of tracebacks for routine exceptions
    8894
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Bad compute node address detection on private networks
    8346
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] WebSocketClient Exception 'NoneType' object is not callable
    8388
    Bug
    1
    In Progress
    2
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] Log throttling shouldn't throttle logs from crunchstat, crunch-job
    8552
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] Add --umask, --fmask, --dmask options to control file permissions
    7831
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Bad use of RetryLoop in events.py
    9141
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDK] arvados.arvfile.readall_decompressed() does not return all blocks on a file
    7156
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] Job was repeatedly retried on same bad compute node until abandoned
    8869
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] Many tutorial instructions are wrong outside Curoverse clusters
    8387
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] No user profile should be required in the default configuration
    8830
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Docs] Document Git 1.7.10+ dependency for shell node and HTTPS Git cloning
    8778
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Docs/Workbench] Document how to clone repositories over HTTPS
    8781
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Docs/Workbench] Improve SSH agent documentation
    8775
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Hide file preview buttons when preview isn't possible with current keep-web config
    7743
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [PySDK] API client logs a warning when you create an object without an owner_uuid
    8885
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Node Manager] Broken nodes always get shut down, exempt from all node-counting considerations
    7980
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Node Manager] Shut down nodes in SLURM 'down' state
    8000
    Story
    6
    New
    1
    71
    -c-a
    36
  • [NodeManager] Use sys.exc_clear() to release exception tracebacks
    8541
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Support (ephemeral) EBS storage for AWS node types that do not have instance storage, like the M4/C4 classes.
    8186
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Node Manager] Minimum idle time before node is eligible for shutdown
    8551
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Node Manager] qr1hi nodemanager can't start if ulimit is in place
    8686
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Doesn't convert units when determining if a job's scratch request is satisfiable
    8084
    Bug
    1
    In Progress
    2
    0.5
    0.5
    71
    -c-a
    36
  • [API] Go code to connect to the API server database and make basic sense of it
    8565
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Go code to implement the Arvados API permissions model
    8566
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] List queries using "distinct" option return incorrect number of items_available
    8638
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Should not be necessary to host git repos on the same host as API server
    6772
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [FUSE] Listing a project directory is slow when there are many subprojects
    8189
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • [FUSE] arv-mount should detect and log any files/dirs that are still open after unmounting
    8163
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [FUSE] Reset mount-tmp to the state of another collection
    7973
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Update run-command to use arv-mount --mount-tmp instead of staging directory
    7847
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [API] Job model validates that the script exists in the repository at script_version
    7621
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Port arv-keepdocker to use the docker-py library
    9428
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] `arv keep docker` can upload an image already saved as .tar
    9045
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] `arv keep docker` can make links for an image already in a collection
    9147
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Clients can specify which auth config file to load.
    3897
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] PySDK one_task_per_input_file should support a num_retries argument
    7660
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] arv CLI program accepts "-" and "/path/to/file" as values for parameters that expect JSON (most notably the "body" parameter)
    8212
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] arv-copy continue on error
    8314
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDK] arv-copy better Git repository error reporting
    8313
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] arv-mount exits non-zero if any I/O errors were returned
    8363
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Asset pipeline does not work unless config/environments/production.rb is present at buildtime and runtime
    6753
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] CSS+images missing on login_failure.html
    7312
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] crunch-dispatch should run the bundled version of crunch-job specified by Gemfile.lock
    7880
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] [Workbench] config:check catches and reports YAML parsing errors
    8195
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SSO] [API] [Workbench] Have config:check sanity check secrets
    7323
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] [Workbench] Check for nonexistent config params during rake config:check
    7694
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [CRUNCH] Fail gracefully when arvados repo doesn't exists
    8121
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Keep] keepstore status.json should report runtime environment
    7024
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Crashes with Fiddlesticks when trying to view a pipeline instance graph copied from another cluster
    7008
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] [Fiddlesticks] Live job log should show recent history
    5846
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Doesn't explain why a job can't be cancelled
    8399
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Show all known runtime_constraints in job status pane
    8091
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Node Manager] Detect and shut down nodes that fail provisioning in Azure
    8515
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Keep] Keepstore and keepproxy support HTTP Range requests
    3734
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] [FUSE] Python SDK and arv-mount use Range requests when a caller requests part of a block that has been ejected from the cache
    8228
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [API] Job log cleaner should not clean logs when the job's log is the empty collection
    7127
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] Document that arv-copy accepts collection PDHs (ie content addresses) as arguments
    7818
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] Recursive pipeline instance arv-copy doesn't copy job objects, losing metadata
    7001
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] Unhelpful translation of script parameter outside script_parameters
    7600
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [node manager] Upgrade to libcloud 1.4+
    8999
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SSO] Template calls undefined method after fresh local accounts installation
    6868
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Unhelpful 404 stack trace when trying to arv-copy a collection without access
    7418
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [git] "git clone https://..." with a bogus token should respond 4xx, not 5xx
    6780
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Keep-store] make keep-store lookup token at runtime like keep-proxy does
    7725
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] arv-copy continues copying when a collection's content address is wrong, but warns and exits a special code
    6968
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDK] arv-copy automatically creates new repository(ies) on the destination cluster
    5676
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] Teach arv-copy to copy whole projects
    6840
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] node visibility as admin vs ordinary user does not line up
    7400
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Keep] keepproxy should log real IP address
    7120
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • ubuntu package libarvados-perl should depend on libcrypt-ssleay-perl
    7823
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] Refresh Google OAuth2 setup in SSO install guide
    8330
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Docs] Install guide keepstore runit script has bad syntax
    8348
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] RVM and passenger recipes are missing details
    7129
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Deployment] arvados-api-server-upgrade.sh should set up git_repositories_dir
    6883
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [login-sync] Sets up settings.conf
    8344
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Documentation] Various small bugs in the CLI SDK install guide
    7170
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] Various small bugs in the install guide
    7356
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] keep-web runit script depends on sudo configuration
    8349
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] Clarify PostgreSQL setup commands for Software Collections users
    8331
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Docs] Install guide missing Websockets details
    8372
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Wiki] Clean up Computation_and_Pipeline_Processing page
    8621
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs/Deployment] MUNGE, Nginx, PostgreSQL services don't start on boot on CentOS 6
    8683
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] Install guide incurs RVM's sudo wrath
    7575
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Docs] SSO install guide documents default_link_*
    8329
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Install guide explains a few different deployment options
    7342
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Documentation] FUSE documentation should note granting FUSE permissions
    7230
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Make keepproxy install guide follow nginx conventions
    6919
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] Write integration test for when arv-put resumes from a cache with expired access tokens
    8937
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Tests] Make slow tests optional (e.g., run-tests.sh --short)
    9017
    Feature
    2
    In Progress
    2
    71
    -c-a
    36
  • [Keep-web] Generate directory listings
    8784
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Many shell node instructions are wrong outside Curoverse clusters
    8386
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] view log via keep-web test fails in arvbox
    8223
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDK] "gem install arvados" fails on ruby <2.2.2 since activesupport 5.0.0 came out
    8222
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] specifying an invalid filter should result in an error
    7166
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Support numeric filter comparisons for numeric fields
    6992
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Synthetic collections include the "kind" field
    9150
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Deployment] Test distribution packages
    7184
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench/API] Does not derive key name from comments with whitespace
    8538
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] [Maybe] Update API server to support Git 1.7.2
    6922
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Mishandles stop signals
    7026
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] a node filled up its /tmp which killed slurm and docker, node unusable. Node manager did not kill the node.
    6996
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Trying to update a collection by PDH raises a NoMethodError
    9143
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] "order" params should be rejected or used (not silently ignored) even when they reference columns missing from the "select" param
    6240
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Accept collection UUID as a job's docker_image constraint
    7695
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Finalize and document the collections/provenance and collections/used_by API calls
    9148
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Keep] keepstore should notify sysadmin about error conditions (trying harder than just log.Print())
    7232
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Remove ruby dependency from arv wrapper
    4730
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] arv-copy should not require --dst-git-repo when copying on the same cluster
    4431
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] Python Keep block-r/w errors should indicate which collection/file was unreadable/unwritable as a result
    6276
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] arv-put progress meter scales based on file size, rather than being fixed to MiB
    6387
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] arv-copy raises an unexpected backtrace on ^C
    6959
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Out of memory when using arv-copy not handled gracefully
    8065
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Recursive arv-copy should report progress of the entire copy, in addition to individual objects
    8379
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] Refactor arv-get/put/copy into the Python "arv" wrapper using common exception-handling and argument parsing
    5468
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] Ensure `arv keep put` replicates properly
    7476
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Go Keep client enforces a minimum transfer rate for proxy connections
    7477
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] [SDKs] Ensure FUSE and other SDK clients work with a default replication level != 2
    7473
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Fetch all results with the CLI `list` command
    8502
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] arv-put's default output includes both collection UUID and PDH
    8415
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] arv get (and edit) should support a flag that suppresses display of non-writable attributes like "status" and "writable_by"
    8213
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Add client-side join switches to `arv foo list`
    8501
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] GoSDK arvadosclient parameters are more transparent
    8498
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] PySDK Collection class lets you iterate files and subcollections separately
    8838
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Git credentials helper in CLI tools
    8780
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] CLI tools install tab completion aids
    8022
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] arv-copy copies all metadata associated with an object
    7394
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Can't `arv get` a collection by PDH
    9144
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Go SDK's arvadosclient and keepclient should share http.Client objects by default
    9005
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Pagination sets limit on last page, causing unintended side effects
    7385
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Copying jobs causes "SubmitIdReused" error if submit_id is not null
    6439
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Project listings act like file manager directory trees, with expanding+collapsing trees
    8562
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Remove Keep disks link?
    6920
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Ability to create a new project when creating a new pipeline instance
    8560
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] User admin interface should show which VM(s) the user can login to
    7830
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] workbench move and copy is incomplete
    7002
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] warn user when navigation will cause input text to be lost
    7003
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Pipeline template description display is difficult to read when making a pipeline template instance
    6436
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Visible blanking between partial content reloads
    6363
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Change project "Jobs and pipelines" tab to just "Pipelines"
    8486
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Add an "invert selection" button to checklists alongside "un/select all"
    8221
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [git] Should be able to clone git repositories that are shared with "anonymouspublic" without authentication
    8318
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [FUSE] With --exec, expose the mount point in an environment variable
    7990
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] arv-mount usage message shows incorrect order for [--exec ...] option
    8294
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] crunch-job does not sufficiently sanitize job parameter names when putting them in the environment
    7404
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [crunchstat-summary] jobs with tasks_per_node>1 need node size recommendations adjusted
    8151
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Keepstore] Support a portable data challenge API
    8181
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Keepstore] Don't trash/delete blocks until they appear on multiple trash lists
    8180
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Do not accept an empty SSH key as valid
    6601
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Project description styled differently based on whether or not the user can write to the project
    6571
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Keep] multiple response.Writeheader calls
    6991
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] `arv create` creates an object from an empty file
    6921
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Deployment] Update Rails package dependencies
    8327
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Add Gitolite sanity check to install guide
    8058
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Docs] file_names Collection field is undocumented
    8873
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] arvados Red Hat repo definition includes gpgkey
    8326
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Deployment] .yml.example files should be consistent
    8328
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Document installing the PySDK at a different PREFIX
    7158
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] A user with an older install may land in a page that requires the "latest" prerequisites.
    6886
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Displays content at the top of the dashboard, set by the sysadmin
    7468
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Provide an interface for the sysadmin to set Dashboard banner content
    7469
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Provide an interface to delete files from collections
    7470
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Provide a CLI tool to add files to an existing collection
    7471
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Provide a CLI tool to remove files from a collection
    7472
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Advertise anonymous token in discovery document
    7141
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] Crunchstat and arv-mount print final stats before exiting
    7845
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Pipeline template listings should include links to the scripts
    7411
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Reusing ArvadosResourceList results in inconsistent results
    7100
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [keep-web] Cache keep_services list between requests
    7595
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] CLI tools support Mac
    7439
    Story
    6
    New
    1
    71
    -c-a
    36
  • [GATK Queue] Support a mechanism to redirect stderr for children
    8773
    Story
    6
    Closed
    5
    71
    -c-a
    36
  • [Docker] API server starts before PostgreSQL is ready
    7000
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Docker] Bootstrap font fails to load in Workbench Docker image
    7007
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Docker] Fix SSO configuration in published images
    7006
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Docker] API server uses omniauth.rb for SSO configuration, not application.yml
    7005
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Docker] Workbench image doesn't serve HTTPS
    6998
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Keep] Write performance tests
    6784
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Performance] Compare Collection performance benchmarks across components
    6783
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] [Workbench] Generate debconf template from config yaml
    6782
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [FUSE][Performance] Job to md5sum 1TiB of 1MiB files in parallel is very slow
    6762
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] Add a --replication switch
    7474
    Story
    6
    New
    1
    71
    -c-a
    36
  • [DRAFT] [Workbench] More encouragement for users to send feedback
    6570
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Keep] keepstore reboots GCE host under heavy load
    6997
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • [Workbench] Provide a GUI interface to arv-copy
    6606
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Whenever `arv` has an invalid resource name argument, it should complain about that
    6599
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] [Webshell] Rough edges in web shell
    6574
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Anonymous user is listed in the "Share with users" popup when anonymous viewing is disabled, while "Share with groups" popup omits the anonymous group
    6677
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] document installation of node manager
    6635
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] webshell installation
    6649
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • Port arvados-libpam to centos
    6517
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] Add runtime option to SDKs (esp Python and arv-mount) to use a filesystem directory block cache as an alternative to RAM cache.
    3640
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [DRAFT] Provide one clear way for users to get data from an external source into Arvados
    5914
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] [API] Support "world-readable, but not world-searchable" permission on projects: "anyone with the link can view"
    6442
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] CLI SDK tools use Ruby SDK
    7099
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Allow additional curation of the public projects listing
    6405
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Deployment] [Documentation] Minimize system-wide dependencies for compute node setup
    6348
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Go SDK locator regexp (and its tests) should agree with the documented format
    6318
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Node Manager] Booting nodes shouldn't satisfy min_nodes
    6313
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Maybe] [SDKs] Support caching Keep blocks in memcached
    6311
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] Support scaling the internal block cache based on number of open files
    6310
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Public project listing should exclude subprojects
    6307
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] [Workbench] Home project should be a real object (group with group_class="project"), not current_user.
    6274
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Add social sharing buttons to public projects [and other data?]
    6175
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Propagate old search engine meta tags in sync with Open Graph data
    6174
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Make public data crawlable
    6173
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Breadcrumbs can occupy multiple rows when the screen is narrow
    6172
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Support searching collections by their collection name
    6130
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Include a mechanism to automatically trust some clients
    6642
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] walk api server installations and ensure modified_at for collections is unique + ensure modified_at is enforced to be unique at the api level.
    6076
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Keep] Design: using Arvados to browse, and run jobs on, input data that is stored remotely (not on local Keep disks)
    5098
    Story
    6
    Closed
    5
    0.5
    0.5
    71
    -c-a
    36
  • [Keep] Use data stored remotely (not in local keepstore)
    5414
    Feature
    2
    Closed
    5
    3.0
    3.0
    71
    -c-a
    36
  • [SSO] Authenticate users with OAuth2
    6025
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Workbench] The collection information box values for content address and content size should be updated automatically after new file(s) are added via browser upload.
    6020
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] `ls` in a large home directory (4400+ items) takes too long
    6019
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [SSOs] Support authentication against multiple backend LDAP servers
    6015
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Keep] Use bufferpool in keepproxy to limit memory use when there are many concurrent PUTs
    5962
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • Slow to log-in to Workbench
    5952
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [DRAFT] [Workbench] Users can be notified about changes to important pipelines
    5949
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Workbench] Provide additional guidance to users running their first pipeline
    5947
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] "other collections have the same content" page is confusing
    5946
    Bug
    1
    New
    1
    71
    -c-a
    36
  • arv-get is slow for this collection
    5945
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • Syntax highlighting of viewing source in workbench
    5928
    Feature
    2
    Closed
    5
    71
    -c-a
    36
  • Keep errors
    5919
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • Fiddlesticks when trying to view a log file
    5923
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [SDKs] PySDK's internal decorators lose method metadata
    5907
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] collection#show performing too many unnecessary API server requests when accessing qr1hi-4zz18-zn1m6s2le7dqjfs.
    5908
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [API] crunch-dispatch should mark a job failed when its repository cannot be fetched
    5906
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Improve certificate validation in Python SDK
    5905
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Workbench] collection#show is unresponsive for a large collection
    5902
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Improve performance of large requests in parallel
    5901
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDK] Implement arvados.gettaskparam(*args) to match arvados.getjobparam(*args)
    5900
    Feature
    2
    Closed
    5
    71
    -c-a
    36
  • [FUSE] Catch and recover from any API client exceptions
    5897
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [FUSE] Ensure all I/O errors properly distinguish "not found" and other API errors
    5896
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] collections#index returns 504 Gateway Timeout
    5892
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Workbench] PipelineInstancesTest#test_Create_and_run_a_pipeline is not reliable
    5878
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Docker] Needs smarter dependency ordering when restarting existing containers
    5876
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Workbench] Mobile menus lack contrast (gray text on aubergine)
    5874
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] Run a local job using a docker image directly from the shell VM (without writing the docker image to Keep)
    5865
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [API] [DRAFT] Provide API methods for manipulating and combining collections
    5781
    Story
    6
    In Progress
    2
    2.0
    2.0
    71
    -c-a
    36
  • All clients authenticate directly against SSO server without going through API server
    5850
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Crunch] crunchstat should not report errors during normal timing races
    5523
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Relax repository name constraints to permit [-_.] -- ideally allow anything github allows
    5840
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Create new collection with selected files copy streams as well as files
    5828
    Feature
    2
    Closed
    5
    71
    -c-a
    36
  • [SDKs] [refactor] Dry up KeepService get() and put() in arvados/keep.py
    5788
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] arv keep docker --download to get image from Arvados
    4223
    Feature
    2
    In Progress
    2
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Support entering boolean script_parameters when editing a pipeline instance
    5782
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [OPS] Routinely check for stale Gemfile.lock
    5769
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Websockets subscribe API should accept a start timestamp, so clients don't have to miss any events logged between the given start time and websocket connection success.
    5767
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Link to script sources on github when repository is a github url
    5841
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] [DRAFT] Fix clock/node time reporting on Workbench pipeline page
    3989
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [OPS] Add diagnostics script for shell nodes
    5740
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Node Manager] Reuse node records after shutting down the cloud node set up with them
    5736
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Replace type-specific #index pages with generic code
    5743
    Bug
    1
    New
    1
    2.5
    2.5
    71
    -c-a
    36
  • [Workbench] Provide a guided workflow to new users who want to upload data and run a public pipeline
    6058
    Story
    6
    New
    1
    2.5
    2.5
    71
    -c-a
    36
  • [FUSE] cd/ls sometimes takes too long on su92l
    5662
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] File access sometimes takes too long on su92l
    5713
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] Document the minimum docker image / Dockerfile that can be used to run a job.
    5035
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] one_task_per_input_stream fails due to unsupported APIs. Remove it from docs, examples, and SDK.
    4696
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Missing link target in iframe error message
    5820
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Make Dashboard contents filterable
    5669
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Favorite projects, pipelines, collections
    5668
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Indicate related pipeline instances
    5667
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Link to log from pipeline and/or job summary page
    5665
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] 504 error returned when trying to create a large new collection
    5614
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Pipeline instance "Re-run with latest" button occasionally returns Not found page
    5235
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] There is no way to silence arv-put and arv-get
    5652
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [FUSE] Support efficient copy at command line
    5778
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Log Graph - Feature requests
    4835
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Improve presentation of anonymously-viewed collections (via both "sharing link" and regular copy-and-pasted Location)
    5415
    Feature
    2
    New
    1
    2.5
    2.5
    71
    -c-a
    36
  • [API] [Workbench] [Performance] Use object caching to improvement performance (such as memcache).
    5624
    Story
    6
    New
    1
    71
    -c-a
    36
  • [DRAFT] [API] Good API for accessing the old_ and new_attributes in Logs table properties column
    5560
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] PySDK test_rewrite_on_empty_file is not reliable
    5496
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] [Performance] Combining big collections should start returning a response faster (currently you can get a 502 proxy error even if the collection still combines)
    4943
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] Node went away unexpectedly during pipeline run.
    5381
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Improve SDK documentation
    5621
    Story
    6
    New
    1
    71
    -c-a
    36
  • Replace the ApiClient is_trusted attribute with a per-{user,client} flag which is set by the user when logging in with a client for the first time.
    3040
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Crunch] crunch-dispatch should use the API instead of running in the API server's rails environment.
    5162
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [API] [Workbench] Add read-only ("locked") flag to projects
    5582
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [OPS] Use packer to generate docker images for our various services
    5118
    Feature
    2
    In Progress
    2
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Workbench should support viewing VCF files
    5511
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [DRAFT] [Crunch] User can configure task retries
    5510
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Change "recent pipelines" to curated selection of "public pipelines"
    5495
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Documentation] Run an uncommitted script straight from a working directory using arv-run-pipeline-instance --run-here
    5494
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Crunch] Job logs include node-level resource usage statistics (cpu, ram, swap, etc)
    5459
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [DRAFT] [API/SSO] Use externally-defined (e.g., LDAP) groups as permission groups
    5413
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Tests] Enhance keep testing to support signed locators.
    5428
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] Add Python version test 2.7 <= sys.version_info < 3
    5137
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • Job failure due to 'arv-put' 'ConnectionError'?
    5515
    Bug
    1
    Feedback
    4
    71
    -c-a
    36
  • [Docs] Note apt key information in Python package READMEs
    5127
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDK] CLI tools should catch socket errors like "Connection refused"
    5327
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] arv-put --description X --properties P should set respective attrs on new collection.
    5201
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Testing] Make run-tests.sh able to run only unit tests or integration tests (or both)
    5254
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Testing] Add a new unit-test-only build step to the build pipeline, before the current test step that runs integration tests
    5255
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] Contain all job/task containers in a memory-limiting cgroup
    5540
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Node Manager] add one integration test for node manager
    5267
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] arv keep put blows up when trying to put a danging symlink
    4957
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [OPS] Write a wrapper script that calls packer to generate customized docker images for a new installation (with IP ranges, hostnames, etc preseeded)
    5119
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Documentation] Fix Go SDK comments so they look reasonable in godoc
    5451
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] arv-run-pipeline-instance should accept project and title parameters
    5138
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Show footer with date last updated
    5245
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] API token provided in query string should not be ignored just because the session already has a token.
    3625
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Tests] Provide a docker image, based on puppet/packer process, that can run the entire test suite quickly.
    5439
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [DRAFT] [Workbench] Improve provenance/used-by graphs so they are legible even for large pipelines / long provenance trails
    5387
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [DRAFT] [Workbench] Improve display of pipelines and jobs
    5384
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • Improvements to sortable log viewer
    3022
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Enable users to share with any other user
    5297
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Documentation] arvados VM simulator, demonstrating how it looks to use Arvados from CLI
    5382
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [DRAFT] [Workbench] Browse change history for records
    5316
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Docker] Auto setup as much as possible for new users
    5284
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDK] Go KeepClient offers a "read block" API that recovers from transmission errors by attempting alternate servers.
    5391
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Buttons should have consistent ctrl-click and right-click behavior
    5541
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docker] Make API server root URL in discovery document easier to resolve
    5147
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Additional settings for ssh/config from Manage Account page
    5307
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Extend Sharing tab to collections
    5296
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Tests] Implement long-running keepstore services in run-tests, similar to what api got in #3021
    5260
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Tests] Reduce dependency on integration tests
    5259
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Public project page should encourage visitors to try using Arvados themselves
    5193
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Pipeline re-run dialog should offer docker image choices (latest/same), similar to script version choices
    5237
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Use sphinx to render for Python SDK docs
    5214
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Tests] Add crunch-job functional tests to the CI suite
    4254
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] CLI tools fail or warn when current working directory is gone
    5134
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [DRAFT] [API] Enrich supported dataclass values for pipeline templates
    5142
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] User can trash and un-trash items
    5032
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] arv-get should support getting multiple files by shell glob
    5139
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Crunch] Use uncommitted code in a git work tree to run a dockerized crunch job in a VM (using crunch-job or arv-run-pipeline-instance --run-jobs-here)
    5133
    Feature
    2
    New
    1
    2.5
    2.5
    71
    -c-a
    36
  • [Crunch] arv-run-pipeline-instance --run-jobs-here cannot run jobs with local script path in script_version.
    4048
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] Refactor run-command so it can be used as an SDK by scripts in a git tree
    4561
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] CLI tools support project paths in addition to uuids
    5097
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [FUSE] Provide a unique mount subtype
    5036
    Bug
    1
    In Progress
    2
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] improve error reporting for failed AJAX calls
    4938
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Suppress "ajax failed" error messages when ajax fails due to browser navigation event.
    3691
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Deployment] Switchyard should behave correctly when one SSH key has access to multiple VMs using different usernames.
    4989
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] File access on keep mount giving I/O error
    3948
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Tests] Eliminate system globals in test suites
    5233
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] after file upload, the files tab should refresh immediately (overriding the 15 second throttle)
    4770
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] Improve metadata created by arv-put
    3311
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [API] Prohibit leaving jobs in an inconsistent state (e.g., state=queued with non-null log or output)
    5026
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] CLI tests should be better isolated from user configuration
    4821
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Workbench provenance graph tabs appear empty when graph is very large
    4805
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Docker] fix @_NOT_FOUND_@ hack in config.rb
    5068
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Replace schizophrenic generic "groups" page with "roles" page that only creates/lists groups with group_class="role".
    5076
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Keep] Keepstore queries API server to verify tokens
    3532
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Merge "user agreement" and "required profile fields" into a single page
    4744
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Crunch] Automatically restart jobs after internal/intermittent errors
    5064
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Docker] Make it easy to add data from the host system to containers
    5025
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Pilot material design theme
    5007
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Make pipeline rerun UI more like jobs'
    5094
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Node Manager] EC2 driver creates nodes configured to terminate on shutdown
    5065
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Node Manager] Don't reuse node table records
    4129
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] When showing a shared project, do not include "Home" in breadcrumbs.
    3573
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] Choose worker nodes where the desired docker image is already available.
    4935
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Tests] When comparing pipelines, the graph should highlight the differences by using different colors for pipeline A/B/both.
    4358
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Page for downloading collections with anonymous sharing link does not have any styling.
    5021
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation/FUSE] Document '.arvados#collection' in shell VM keep mount
    4906
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] `arv keep docker` should pipe the data directly to Keep instead of store-and-forward, and provide some progress feedback up front in any case.
    5033
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Make "Compute and job status" pane update dynamically
    4881
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] File upload should start immediately, not wait for user to press "Start"
    5020
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] In search dialog, the preview panel on right should get cleared when the selection container (on the left side) is cleared.
    4921
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] Quick turnaround time when updating a docker image in order to re-run a job
    4833
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] When using "Run pipeline" button at the top of project A, the pipeline template chooser should start out showing project A, not "All projects".
    4841
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Editable "name" column is presented but not actually available for "other" objects such as Human and Specimen.
    4923
    Bug
    1
    Resolved
    3
    71
    -c-a
    36
  • [SDKs] [DRAFT] arv-get with just one locator argument should download the entire collection
    4952
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Collection content hash should stay up-to-date (e.g., while uploading files)
    4771
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] run-command should show helpful error message when task.foreach argument is not a list
    4726
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Discovery doc should fix its incorrect "list" method description to be identical to "index"
    4767
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Run-command docs should remind user how & why to exit non-zero on failure.
    4579
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] arv-put should assume --no-resume when --raw is given
    4669
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Tests] Diagnostics suite tests that live logs are displayed while jobs are running.
    4635
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Prompt user when logging in to a client for the first time.
    4692
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [DRAFT] [Workbench] Prevent CSRF and XSS attacks
    4690
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Search box on collections page should use infinite scroll instead of (broken) page number links
    3224
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Create and edit pipeline templates
    3490
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Projects dropdown should have a free text filter box
    4647
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] crunch-dispatch's Bundler environment infects non-Docker jobs
    4750
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Remove success and running attributes from job data model, since we are now using the state attribute.
    4729
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Websocket client should only subscribe to events about relevant objects, not all events.
    4700
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Show more (earlier) log entries for a running job
    4530
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Documentation] Introduce compute workflow / pipeline concepts in user guide
    4566
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Documentation] Best practices for getting the most out of job re-use
    4508
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Documentation] Set of introductory tutorials each focused on accomplishing a simple task
    4531
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Documentation] Tutorial for adding a crunch script wrapper for an existing tool that is already hosted on github.
    3223
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Sortable column headings (filename, size) in collections#show
    4460
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Disable auto-refresh on tabs with infinite-scroll or editable content.
    3387
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] Do more error-checking and show more diagnostic info when installing a Docker image
    4494
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] CLI tool to view real time logs from running jobs/pipelines, much like the Log tab of the Workbench PipelineInstance#show page
    3980
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] "Add data from another project" modal supports regex filtering
    4808
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] Option to watch logs (instead of exiting) when queuing a job or pipeline instance using arv job create, arv pipeline run, etc.
    4503
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] "Download" / "Save as" button for provenance graph
    4642
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Reveal log collection ID in pipeline/job summary and job Log tab
    3928
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Project show page should have buttons to add objects besides Collections
    3284
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [API] API method and CLI shortcut for refreshing the signatures on some block locators (without creating a collection)
    4650
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Display portable data hash, parent project, file count in Collection tables
    4393
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Job detail page should show the job status when the job is not running or has completed running (button that shows 'queued', 'not ready', 'failed', 'complete', etc)
    4539
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Arvados clients can use standard OAuth2 protocol instead of custom token handling mechanism
    4919
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Each active job/pipeline on the dashboard should show how many worker nodes are allocated to it.
    4427
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Job view should include the relevant component name(s) from each pipeline where the job was used
    4289
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Pipelines that are in New or Ready state should show up somewhere on the dashboard, (e.g., in "Active pipelines" or "Recent pipelines" table).
    4514
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Make duplicate name error message more user-friendly
    4394
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Provide feedback on dashboard to indicate that NodeManager is booting a node.
    4446
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] "arv recent [objectType]" lists recently modified objects
    4502
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Crunch] Pipelines should not fail immediately after one job failure, but continue running as much as possible
    4302
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [OPS] Improve and automate non-shared VM configuration
    4500
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Report a Problem" menu item does not like being opened in a new tab/window.
    4452
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Don't show empty projects/collections when using the chooser dialog to select pipelines, files, etc.
    4516
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Tests] Websockets should work out of the box in test/development modes, even when using an ssh tunnel and a self-signed certificate.
    3101
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [API] websocket clients should not put API tokens in path or query string
    3037
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [API] [Workbench] Site-wide regex searching
    4442
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Add a "docker images" page to Workbench that lists available docker images
    3125
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [API] [SDKs] Include provenance information for uploaded Collections
    4404
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] [API] "Manage" permission should be sufficient to delete subprojects
    4182
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Order by Collections "Name" column puts "folders" (collections containing files) at the top
    4350
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] When editing a template in arv-edit and faced with a parse error, when trying again, it should automatically take you to the line/column of the error
    4349
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [API] API method and interface to check if a bugfix is deployed on a cluster
    4175
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [OPS] Implement new deploy procedure
    2897
    Feature
    2
    In Progress
    2
    3.0
    3.0
    71
    -c-a
    36
  • [SDKs] arv create needs --project-uuid and --name parameters for appropriate classes
    4343
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Docker] Fix supervisor.conf to supervise services instead of running init.d start script and hoping everything is OK
    4324
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] run_command should use SDK's retry support
    4009
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] as admin user, permission denied canceling a job (started by another user)
    4273
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] default .ssh/config instructions should specify cluster name
    4265
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [DRAFT] [SDKs] arv-keepdocker should be smarter about caching the image to upload
    4438
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] Email notification when pipeline finishes, depending on user prefs flag
    3829
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Project chooser dialog should have a "create new project" button.
    3226
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Documentation] Update and expand user/tutorials/tutorial-keep-mount.html to show practical ways of finding data via FUSE mount.
    4237
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [API] Jobs that sit in the front of the queue for a long time without running should be cancelled
    4256
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDK] Make arv keep docker smarter about storing docker layers, thus making uploads of changed images (much) faster
    4193
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDK] arv-copy collection copy performance
    4309
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] Implement "arv keep less" and "arv keep check" natively instead of hoping whless and whcheck are installed.
    4255
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [API] Link model validation allows only Users and Groups to get can_read, can_write, can_manage
    4118
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Keep] "Shared" directory in arv-mount doesn't show non-project groups that own projects
    4191
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Users activity page link is gone for non-admin users with read-only admin permissions. Users activity page only shows own activity for non-admin users with read-only admin permissions.
    4116
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] api server docker_images endpoint
    4288
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] arvados.collection.Manifest classes for manipulating collection manifests
    4137
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [API] Non-admin users should see all nodes with crunch_worker_state busy/idle, regardless of ping age.
    3976
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] CLI 'arv pipeline run --run-pipeline-here' should change instance state from 'ready' (or 'not running'?) to 'RunningOnClient'
    3974
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] [refactor] JavaScript refactoring
    4128
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] pipeline instance that is RunningOnClient should be rendered as Running, not Ready.
    3834
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] After cloning a pipeline instance, the new instance should not have any cancelled jobs/components
    3973
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] arv pipeline_instance --help should work even if api server is not running / reachable.
    4041
    Bug
    1
    Resolved
    3
    0.5
    0.5
    71
    -c-a
    36
  • [SDK] Command line tool to manipulate collection manifests
    4030
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Command-line diagnostic suite reveals problems on a shell VM (e.g., arv-mount, SDK version skew)
    3964
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [API] Discovery document schema does not include generated fields like job dependencies
    3817
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Install man pages for CLI tools (auto generate from the --help content)
    3892
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Rearrange collection chooser to show a preview (file list) inline instead of in a separate preview pane. See [[Workbench UI images]]
    3298
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDK] arv-put supports --ignore-symlinks
    3815
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Discovery document schema should include whether field on resource is writable or read-only.
    3818
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [API] [refactor] Move system_group, system_user, etc to class methods in Group and User
    3622
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDK] Show the Workbench URI for the job when running a job or pipeline from the command line
    3365
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Improve chooser preview for collections, and add previews for objects that don't have any yet (pipeline instances, templates, jobs, projects)
    3445
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Link to OFTC web chat on version/bugreport modal
    3279
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • "Choose folder" dialog when running a pipeline displays folders you can't write to
    3437
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Clean up exception raise/rescue usage, use 4xx and 5xx appropriately
    3416
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDK] Show the API server URI for the new pipeline instance when running a pipeline from the command line.
    3355
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Can see job information but cannot access output collection
    3391
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docker] use local docker install for additional testing
    3336
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Tests] Non-destructive test script suitable for running on a production VM/server in order to verify correct operation of basic features.
    3163
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Crunch] Queued and running jobs do not get cancelled when a pipeline instance gets cancelled.
    3165
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Progress bar not fully green when all jobs/tasks complete successfully
    3073
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] resolve race condition in displaying logs from newly-completed jobs
    3164
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Moving a pipeline instance from a private project to a shared project does not also effectively share the component jobs.
    3172
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDK] Keep clients (e.g., arv-put and crunch-job) ask API to refresh blob signatures if expiry times are sooner than ETA of collection.create
    3199
    Story
    6
    New
    1
    3.0
    3.0
    71
    -c-a
    36
  • "Dump core" option when running a job (or every job in a pipeline): save the state of a failed task's container before tearing it down.
    3179
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [API] Support query of "properties" field on objects
    4019
    Story
    6
    New
    1
    5.0
    5.0
    71
    -c-a
    36
  • AJAX behaves strangely if login token expires
    3086
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Docs] Update Arvados permissions model in docs
    3711
    Story
    6
    In Progress
    2
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Pipelines started from the CLI should set status to "Paused" when aborted
    3978
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Good Collection API for Python SDK
    4823
    Feature
    2
    In Progress
    2
    1.0
    1.0
    71
    -c-a
    36
  • [workbench] Enable in-browser preview for text files in collections
    5375
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Display duration on pipeline instance listings
    5646
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Provide more feedback about when a queued job is likely to start.
    4456
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Add search filter to "/links" page
    5793
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Support "display_order" (integer) key for pipeline template components. Obey when rendering pipeline summary/details in Workbench.
    2992
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Validate that selected columns are selectable, and return an error if not
    5738
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Should validate that a job's repository actually exists before rendering the link to avoid fiddlesticks
    5913
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Re-connect to websockets when the connection drops; use "last_log_id" so nothing is missed.
    4706
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Display timestamps in user's local timezone using class="localized-time"
    3629
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Docs] Fix flow of Rails servers' install guides
    8332
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
131
Interpretation automation
2020-06-23
2020-06-30
  • Incorporate coverage info from get-evidence dataset_reports in publication statistics
    9027
    Feature
    2
    New
    1
    131
    -c-a
    31
  • Arvados job: download data from remote site into Keep
    8707
    Feature
    2
    In Progress
    2
    1.0
    1.0
    131
    -c-a
    31
  • Trigger an arvados job to retrieve the data and import it into Keep
    8689
    Feature
    2
    In Progress
    2
    1.0
    1.0
    131
    -c-a
    31
  • Check for finished download/processing jobs
    8697
    Feature
    2
    In Progress
    2
    1.0
    1.0
    131
    -c-a
    31
  • When UserFile data is updated, if it has a suitable data type, submit report-generator jobs
    8698
    Feature
    2
    New
    1
    2.0
    2.0
    131
    -c-a
    31
  • Arvados job/pipeline generates ClinVar HTML report from VCF
    8701
    Feature
    2
    Closed
    5
    2.0
    2.0
    131
    -c-a
    31
  • Arvados job/pipeline generates GET-Evidence HTML report from VCF
    8700
    Feature
    2
    Closed
    5
    2.0
    2.0
    131
    -c-a
    31
  • Add report status/links to "show user_files" page
    8699
    Feature
    2
    Resolved
    3
    1.0
    1.0
    131
    -c-a
    31
  • Accept authenticated API calls from data providers to add datasets to a public profile
    8688
    Feature
    2
    Resolved
    3
    2.0
    2.0
    131
    -c-a
    31
  • Check UserFiles too when checking for Datasets that are ready to publish
    8710
    Bug
    1
    Closed
    5
    0.5
    0.5
    131
    -c-a
    31
72
Deferred
2020-12-30
2020-12-31
  • [Workbench] Report HTTP error instead of sending 0-byte file when error fetching from keep
    6754
    Bug
    1
    New
    1
    1.0
    1.0
    72
    -c-a
    36
  • [Node Manager] Add max_node_per_user config
    5768
    Feature
    2
    New
    1
    0.5
    0.5
    72
    -c-a
    36
  • [Workbench] Remove ActiveRecord dependency
    5471
    Story
    6
    Rejected
    6
    72
    -c-a
    36
  • [Workbench] reports "oops, request failed" rendering projects with very large collections
    5045
    Bug
    1
    New
    1
    72
    -c-a
    36
  • [API] Make user.send_profile_created_notification detect preference changes better
    4991
    Bug
    1
    New
    1
    1.0
    1.0
    72
    -c-a
    36
  • [Crunch] "stdbuf": executable not found in $PATH
    4977
    Bug
    1
    New
    1
    72
    -c-a
    36
  • [Crunch] port crunch-job to python
    4011
    Feature
    2
    New
    1
    3.0
    3.0
    72
    -c-a
    36
  • [Workbench] Should be able to browse "home project" of other users that are readable by you.
    3589
    Bug
    1
    New
    1
    72
    -c-a
    36
  • [API] Add migration to change collection uuids to portable_data_hash in old job script_parameters
    4756
    Bug
    1
    Rejected
    6
    2.0
    2.0
    72
    -c-a
    36
  • [Metadata] As an adminstrator, I want to specify a required ontology for a given data type for a defined class of users
    4217
    Feature
    2
    New
    1
    72
    -c-a
    36
  • [Workbench] Hard to find user agreement after it has been signed
    3257
    Bug
    1
    In Progress
    2
    0.5
    0.5
    72
    -c-a
    36
  • [Workbench] Render textile markup in description fields
    3299
    Story
    6
    New
    1
    1.0
    1.0
    72
    -c-a
    36
  • [Sample clients] Ingestor utility responds to "ready to ingest" events by copying the specified files from staging directory to Keep and storing the collection in the specified group.
    2523
    Story
    6
    Rejected
    6
    3.0
    3.0
    72
    -c-a
    36
  • [SDKs] Python SDK Keep client can enable "HEAD before PUT" mode when writing. Expose this as an arv-put option.
    2706
    Feature
    2
    New
    1
    1.0
    1.0
    72
    -c-a
    36
  • [Lightning] Lightning Memory-Mapped Database
    1558
    Story
    6
    Resolved
    3
    72
    +c-a
    36
  • [Keep] Support transparent compression of blocks in Keep
    3491
    Story
    6
    New
    1
    72
    -c-a
    36
  • [Keep] Keep server supports SSL
    2293
    Story
    6
    Rejected
    6
    2.0
    2.0
    72
    -c-a
    36
  • Ability to mark one's own projects as read-only to avoid changing it by accident.
    3473
    Story
    6
    New
    1
    72
    -c-a
    36
  • [SDKs] Python SDK supports Django model/manager style usage
    2028
    Story
    6
    Rejected
    6
    2.0
    2.0
    72
    -c-a
    36
  • Machine-readable API schema that indicates which fields of each object type permit updating by regular (non-admin) users who have can_write or can_manage permission.
    3528
    Feature
    2
    New
    1
    72
    -c-a
    36
  • [Keep] Keep performance testing
    2656
    Feature
    2
    New
    1
    72
    -c-a
    36
  • If a pipeline/job is in a project, it would be nice if the breadcrumbs reflected this for easy maneuvering back and forth
    3402
    Feature
    2
    New
    1
    72
    -c-a
    36
  • [Workbench] Can't edit runtime_constraints in the 'components' tab of pipelines
    3094
    Bug
    1
    New
    1
    72
    -c-a
    36
  • [Crunch] Pipeline can use other pipelines templates as components
    3093
    Story
    6
    New
    1
    72
    -c-a
    36
  • Move permission links to their own table in API server.
    3519
    Story
    6
    New
    1
    72
    -c-a
    36
  • [API] If enabled by user via "preferences" checkbox in Workbench, notification service sends email to owner when a pipeline instance finishes or fails.
    2679
    Story
    6
    New
    1
    2.0
    2.0
    72
    -c-a
    36
  • Counting the number your pipelines were used by unique users
    3498
    Feature
    2
    New
    1
    72
    -c-a
    36
  • [API] Client can request signed locators for specific blobs from API server
    3162
    Feature
    2
    New
    1
    72
    -c-a
    36
  • No workbench user interface for sharing collections
    3434
    Bug
    1
    New
    1
    72
    -c-a
    36
  • [Workbench] Add checkboxes to multi-type chooser modal to filter by object type
    3304
    Story
    6
    New
    1
    2.0
    2.0
    72
    -c-a
    36
  • [Crunch] When a job fails in a pipeline instance, should the other queued/running jobs get cancelled automatically?
    3180
    Story
    6
    New
    1
    72
    -c-a
    36
  • Write network and disk IO performance stats to Keep/KeepProxy logs
    3146
    Feature
    2
    New
    1
    72
    -c-a
    36
  • design document for websockets/event bus
    3231
    Feature
    2
    Closed
    5
    72
    -c-a
    36
  • [Workbench] Code pops up for a second using web uploader
    4809
    Bug
    1
    New
    1
    72
    -c-a
    36
  • [Tests] Keep load test
    2580
    Feature
    2
    New
    1
    2.0
    2.0
    72
    -c-a
    36
  • [Workbench] Large downloads through workbench fail
    5426
    Bug
    1
    In Progress
    2
    0.5
    0.5
    72
    -c-a
    36
Crunch v2
2015-12-02
2016-03-30
  • [CWL] Tries to run docker inside container where docker is not available, gives IOError
    10696
    Bug
    1
    New
    1
    11
    -c-a
    36
  • [Workbench] [UNC] Copying collections also copies metadata
    10123
    Feature
    2
    New
    1
    11
    -c-a
    36
  • [Crunch2][Workbench]workflow#show page (similar to pipeline_template#show page)
    10112
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] [API] Permit container [request] with empty command (run default docker command)
    9969
    Bug
    1
    In Progress
    2
    11
    -c-a
    36
  • [Crunch2] [API] Support container request expiry (expires_at)
    9968
    Feature
    2
    New
    1
    11
    -c-a
    36
  • [Crunch2] [API] Add ephemeral "run token" for running containers
    9900
    Bug
    1
    New
    1
    11
    -c-a
    36
  • [Crunch2][Workbench] Add a /all_workflows page that lists pipeline_templates and workflows.
    9839
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] CWL workflow failed with Crunch2, but passed with Crunch1
    9703
    Bug
    1
    New
    1
    11
    -c-a
    36
  • [Crunch2] [API] Reject ContainerRequests with ram exceeding configured maximum
    9622
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] [API] Reject ContainerRequests with vcpus exceeding configured maximum
    9621
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] SLURM dispatcher ignores Containers it can't dispatch
    9616
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] [Workbench] Browse and show tools using the GA4GH tool registry API
    9044
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] [API] API server implements tool registry API
    9042
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] [API] Workflow submission API
    9086
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] Running CWL issues a container request to download and register required Docker images
    9046
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] git tree mount points
    8311
    Feature
    2
    New
    1
    11
    -c-a
    36
  • [Crunch2] [API] Supports a tool registry submission API
    9048
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] [Spike] Prototype using SLURM's linear scheduler, node sharing
    8312
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] Throttle logs
    8019
    Feature
    2
    New
    1
    11
    -c-a
    36
  • [Crunch2] Impure mount from host fs
    8569
    Feature
    2
    New
    1
    11
    -c-a
    36
  • [Crunch2] Impure access to object store
    8570
    Feature
    2
    New
    1
    11
    -c-a
    36
  • [Crunch2] Implement runtime constraints in crunch-run Docker invocation
    9131
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] [Spike] Investigate existing SLURM plug-ins to boot compute nodes on demand in a cloud
    8305
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] [Spike] SLURM plug-in to boot Arvados compute nodes in a cloud
    8304
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] Workbench shows logs of child containers when a crunch1 job submits child containers
    9357
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] [API] Add run_as_user_uuid to container request
    10511
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] [Workbench] Select a Javascript client framework for future development
    9668
    Story
    6
    In Progress
    2
    11
    -c-a
    36
  • [Crunch2] [API] Default ram value to fill in for ContainerRequests
    9620
    Story
    6
    Rejected
    6
    11
    -c-a
    36
  • [Crunch2] [API] Default vcpus value to fill in for ContainerRequests
    9619
    Story
    6
    Rejected
    6
    11
    -c-a
    36
  • [Crunch2] crunch-run expires output collection immediately
    11064
    Feature
    2
    Duplicate
    7
    0.5
    0.5
    11
    -c-a
    36
  • [Crunch2] Separate service to poll sinfo and update nodes table
    10683
    Feature
    2
    Rejected
    6
    2.0
    2.0
    11
    -c-a
    36
12
RFCs
2016-02-17
2016-02-29
  • [API] Deployable Go API server that proxies unimplemented APIs to Rails
    9053
    Story
    6
    New
    1
    12
    -c-a
    36
  • [SDKs] Design more idiomatic and convenient Go SDK
    8964
    Story
    6
    New
    1
    12
    -c-a
    36
  • APIs for querying collection contents
    8908
    Story
    6
    New
    1
    12
    -c-a
    36
  • Install a code review software or expand redmine to smooth out the ping-pong for review
    8723
    Story
    6
    New
    1
    12
    -c-a
    36
  • [Workbench] "Work unit" user interface
    8647
    Story
    6
    New
    1
    12
    -c-a
    36
  • Store pipeline resources in new group type
    8645
    Story
    6
    New
    1
    12
    -c-a
    36
  • [CWL] Workbench support for CWL
    8643
    Story
    6
    Resolved
    3
    12
    -c-a
    36
  • Changing architecture for dynamic node spinup
    8574
    Story
    6
    New
    1
    12
    -c-a
    36
  • rfc6920 scheme for keep
    8535
    Story
    6
    New
    1
    12
    -c-a
    36
  • [SDKs/FUSE] Better retry defaults
    8539
    Story
    6
    New
    1
    12
    -c-a
    36
Product Backlog
  • [arv-put] bad progress indicator
    11296
    Bug
    1
    New
    1
    -c-a
    36
  • [CWL] Fails with $schemas referencing remote resources.
    11257
    Bug
    1
    New
    1
    -c-a
    36
  • [API] full text search on pipeline_instances table is extremely slow (wrong index?)
    11261
    Bug
    1
    New
    1
    -c-a
    36
  • [API] "arv group contents" produces a 404 error (seems to POST instead of GET?)
    11260
    Bug
    1
    New
    1
    -c-a
    36
  • [Tests] Make workbench integration tests finish faster (at least in Jenkins)
    11251
    Story
    6
    New
    1
    -c-a
    36
  • [Workbench] Better user-facing terms for container states
    11250
    Story
    6
    New
    1
    -c-a
    36
  • [SDKs] Writable collection files returned by Go SDK should be seekable
    11249
    Feature
    2
    New
    1
    -c-a
    36
  • job_task creation fails with ApiError - HttpError 422 - ActiveRecord::StatementInvalid: PG::InternalError: ERROR: invalid memory alloc request size 1718630765
    11238
    Bug
    1
    New
    1
    -c-a
    36
  • python-arvados-python-client depends on old versions of packages
    11237
    Bug
    1
    New
    1
    -c-a
    36
  • Docker load time on compute node is too long
    11222
    Bug
    1
    New
    1
    -c-a
    36
  • [SDKs] Fix misleading arv-mount/pysdk error messages by removing obsolete "fetch manifest from Keep" code
    11220
    Bug
    1
    New
    1
    -c-a
    36
  • [Deployment] Use consul to report health of services/components
    11183
    Feature
    2
    In Progress
    2
    -c-a
    36
  • [Nodemanager] Packaging for compute node setup scripts
    11171
    Story
    6
    New
    1
    -c-a
    36
  • [GA4GH] Participate in workflow interoperability activities
    11163
    Story
    6
    New
    1
    -c-a
    36
  • [GA4GH] Support workflow execution API
    11162
    Story
    6
    New
    1
    -c-a
    36
  • [GA4GH] Support task execution API using crunch v2 containers
    11161
    Story
    6
    New
    1
    -c-a
    36
  • [GA4GH] Expose workflow records via tool registry API
    11160
    Story
    6
    New
    1
    -c-a
    36
  • [GA4GH] Import from tool registry API
    11159
    Story
    6
    New
    1
    -c-a
    36
  • [arv-put] When debug mode is active, report the cache file name being to be used
    11157
    Bug
    1
    New
    1
    -c-a
    36
  • [Docs] Document keepstore S3 volume configuration
    11155
    Bug
    1
    New
    1
    -c-a
    36
  • [Docs] Migrate install docs from command line flags to YAML configs (keepstore, keepproxy, keep-web)
    11154
    Bug
    1
    New
    1
    -c-a
    36
  • [API] create_token script should allow operator to provide token scopes and opaque comment
    11153
    Feature
    2
    New
    1
    -c-a
    36
  • [Crunch2] Propagate dispatch error messages (e.g., sbatch fails) to user via logs/websocket
    11148
    Bug
    1
    New
    1
    -c-a
    36
  • Write scalability test which can be used periodically as needed
    11147
    Story
    6
    New
    1
    -c-a
    36
  • apt-get upgrade arvados-api-server on Ubuntu 12.04 did not update crunch-job
    11137
    Bug
    1
    New
    1
    -c-a
    36
  • [CWL] Hint to control reuse of individual workflow steps
    11095
    Feature
    2
    New
    1
    0.5
    0.5
    -c-a
    36
  • "arv keep_service create" should go to an editor.
    11093
    Bug
    1
    New
    1
    -c-a
    36
  • Trying to copy a pipeline template to 9tee4 fails
    11075
    Bug
    1
    New
    1
    -c-a
    36
  • [Arvados-CWL-runner] need better error message when there are issues getting the docker image
    11068
    Bug
    1
    New
    1
    -c-a
    36
  • [Workbench] "repositories" page does not show repositories shared with "All users"
    11060
    Bug
    1
    New
    1
    -c-a
    36
  • "Run a example test" Button.
    11026
    Bug
    1
    New
    1
    -c-a
    36
  • [SDKs] [Python] When reading data through Collection et al., signatures should refresh automatically when needed
    10008
    Bug
    1
    New
    1
    -c-a
    36
  • Document how to choose a suitable blob signature TTL
    11016
    Story
    6
    New
    1
    -c-a
    36
  • [WB] 'Used by' tab empty when no graph is available
    11013
    Bug
    1
    New
    1
    -c-a
    36
  • [CWL] Avoid using "+" char in mount paths
    10978
    Bug
    1
    New
    1
    0.5
    0.5
    -c-a
    36
  • arvados-cli gem dependency error
    10955
    Bug
    1
    New
    1
    -c-a
    36
  • [Workbench] Live stats should use consistent coloring for graphs
    10948
    Bug
    1
    New
    1
    -c-a
    36
  • [Docs] [SDKs] Mention in API docs and discovery doc that destroy=delete and index=list
    10946
    Bug
    1
    New
    1
    -c-a
    36
  • [Spike] virtualenv arvados-cwl-runner
    10904
    Story
    6
    New
    1
    -c-a
    36
  • [Documentation] we should not use github.com copy of arvados in the tutorial
    10898
    Bug
    1
    New
    1
    -c-a
    36
  • [cwl] arvados-cwl-runner submitted job fails due to missing dependency futures>=3.0.5 in docker/jobs image
    10881
    Bug
    1
    New
    1
    -c-a
    36
  • [Crunch2] [Crunch1] Disable crunch1 APIs by default on new installs
    10865
    Feature
    2
    New
    1
    0.5
    0.5
    -c-a
    36
  • [API] [SDKs] When client and server versions differ, the server must either implement the API the client expects, or return an error.
    10849
    Story
    6
    New
    1
    -c-a
    36
  • [Workbench] Support array type input parameters to Workflows
    10830
    Feature
    2
    New
    1
    -c-a
    36
  • [Workbench] Don't create manifest with 0 length chunk
    10809
    Bug
    1
    New
    1
    -c-a
    36
  • Notification of job completion
    10798
    Story
    6
    New
    1
    -c-a
    36
  • [keepstore] Refactor volume Get/Put funcs to BlockReader/BlockWriter interfaces
    10794
    Bug
    1
    New
    1
    -c-a
    36
  • [API] [arvados-ws] remove all websockets and puma related code from the api server codebase
    10767
    Feature
    2
    New
    1
    -c-a
    36
  • [arvados-ws] switch our test infrastructure over to arvados-ws
    10765
    Feature
    2
    New
    1
    0.5
    0.5
    -c-a
    36
  • [arvbox] [arvados-ws] Make arvbox use the new arvados-ws
    10763
    Feature
    2
    New
    1
    0.5
    0.5
    -c-a
    36
  • [Workbench] pipeline_instance#show page should offer “Copy to project” and “Move pipeline instance” options like most other show pages
    10756
    Bug
    1
    New
    1
    -c-a
    36
  • add a --user-script option to install-arvados-jobs-image
    10718
    Bug
    1
    New
    1
    -c-a
    36
  • [Docs] Missing docker_image link classes from API docs
    10721
    Bug
    1
    New
    1
    0.5
    0.5
    -c-a
    36
  • [Workbench] "Public pipelines" on help menu links to wiki, not local public pipelines
    10715
    Bug
    1
    New
    1
    -c-a
    36
  • arv-run update to use crunch v2 and/or CWL or remove as obsolete.
    10717
    Story
    6
    New
    1
    -c-a
    36
  • [Crunch2] crunch-run fails trying to set swappiness on ubuntu 1204 kernel
    10708
    Bug
    1
    New
    1
    -c-a
    36
  • PostgreSQL error when searching
    10706
    Bug
    1
    New
    1
    -c-a
    36
  • Crunch1 jobs should still work on a slurm setup configured for Crunch2
    10689
    Bug
    1
    New
    1
    -c-a
    36
  • Packaged go binaries should report their own version numbers