154
2017-03-01 sprint
2017-02-16
2017-03-01
  • Reduce amount of parallelism in crunchstat-summary
    10359
    Bug
    1
    In Progress
    2
    0.5
    0.5
    154
    -c-a
    36
  • crunchstat-summary should work on arvados-cwl-runner --submit pipelines
    10472
    Bug
    1
    In Progress
    2
    0.5
    0.5
    154
    -c-a
    36
  • [arv-put] crash in arvfile on upload NoneType object has no attribute 'closed'
    11002
    Bug
    1
    In Progress
    2
    154
    -c-a
    36
  • [Node Manager] [Crunch2] Take queued containers into account when computing how many nodes should be up
    6520
    Feature
    2
    In Progress
    2
    0.5
    0.5
    154
    11
    -c-a
    36
  • [FUSE] [SDKs] When reading data through Collection et al., signatures should refresh automatically when needed
    10008
    Bug
    1
    In Progress
    2
    0.5
    0.5
    154
    -c-a
    36
  • [API] Reuse containers even when multiple matching containers exist with differing outputs
    11097
    Bug
    1
    In Progress
    2
    0.5
    0.5
    154
    -c-a
    36
  • [Documentation] Document Keep Balance setup in the Install Guide
    7995
    Story
    6
    In Progress
    2
    1.0
    1.0
    154
    -c-a
    36
  • [DOC] add cookbook section with code snippets
    10349
    Bug
    1
    New
    1
    0.5
    0.5
    154
    -c-a
    36
  • [Crunch2] crunch-run: stop the container and fail if arv-mount dies before the container finishes
    10777
    Bug
    1
    New
    1
    154
    11
    -c-a
    36
  • arv-mount pathologically slow enumerating files
    10629
    Bug
    1
    New
    1
    1.0
    1.0
    154
    -c-a
    36
  • [arvados-ws] Write unit tests
    10764
    Feature
    2
    New
    1
    154
    -c-a
    36
  • [FUSE] Determine why bcl2fastq doesn't work with writable keep mount
    10035
    Bug
    1
    New
    1
    1.0
    1.0
    154
    -c-a
    36
  • Improve throughput of crunch-run output-uploading stage using multi-threaded transfers
    11015
    Feature
    2
    New
    1
    2.0
    2.0
    154
    -c-a
    36
  • [Crunch] Set output collection owner_uuid to match job
    11121
    Bug
    1
    Resolved
    3
    154
    -c-a
    36
  • [Crunch2] System-owned container outputs should be garbage-collected
    9277
    Story
    6
    Resolved
    3
    0.5
    0.5
    154
    11
    -c-a
    36
  • [API Server] Implement Docker version compatibility fallback support
    11017
    Story
    6
    Resolved
    3
    1.0
    1.0
    154
    -c-a
    36
  • crunch doesn't end jobs when their arv-mount dies
    10585
    Bug
    1
    Feedback
    4
    0.0
    0.0
    154
    -c-a
    36
155
2017-03-15 sprint
2017-03-02
2017-03-15
  • Protection against running new style docker 1.10+ image on old docker host
    11138
    Bug
    1
    New
    1
    155
    -c-a
    36
  • Nginx config should speak JSON when returning its own response for unproxyable API requests
    11136
    Bug
    1
    New
    1
    155
    -c-a
    36
156
2017-03-29 sprint
2017-03-16
2017-03-29
71
Arvados Future Sprints
2020-01-01
2020-01-02
  • [SDK] Improve caching & data pipelining in Go SDK
    10996
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Delete rows from logs table when they exceed a configured threshold
    11065
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [keep-web] configurable block cache size
    10998
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [DOC] update documentation to list ubuntu1604
    10988
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Crunch2] [API] return a more specific 422 error message when a client calls containers#unlock without having the lock
    10705
    Bug
    1
    In Progress
    2
    71
    11
    -c-a
    36
  • [Crunch2] Provenance graph for Container Request
    10111
    Bug
    1
    New
    1
    2.0
    2.0
    71
    11
    -c-a
    36
  • [Node Manager] Doesn't kill itself when unhandled exceptions are raised during actor setup
    8871
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Update job stats to be more useful to end user
    10679
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Python SDK] Document undocumented methods in RichCollectionBase
    10650
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • Integrate CI::Reporter to provide test output in JUnit XML format
    10525
    Story
    6
    New
    1
    71
    -c-a
    36
  • Add varchar_pattern_ops to all relevant PostgreSQL UUID indexes
    10354
    Story
    6
    New
    1
    71
    -c-a
    36
  • Output glob "./" doesn't work as output from CWL workflow
    10308
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] [Workbench] Error out when unrecognized keys appear in config files
    10594
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Go programs] Error out when unrecognized keys appear in config files
    10282
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Arvados should be able to cat/zcat files in collections easily
    10191
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Node Manager] Support ephemeral additional storage for Azure node types that do not have sufficient instance storage
    10183
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SSO] sso server adds multiple records without checking
    10167
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Automate starting/enabling services during Workbench and API package installation
    9960
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Ability to add group from Groups admin page
    10142
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL][Crunch][Crunch2] crunchrunner should ignore hidden directories when uploading to keep
    9965
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL][Crunch2][Crunch] crunchrunner should use CWL globs to output data to keep
    9964
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] Undelete collections by moving them out of the TrashDirectory
    9591
    Story
    6
    New
    1
    71
    -c-a
    36
  • [keep-balance] Refuse to act when planning to delete data above an admin-specified threshold
    8179
    Story
    6
    New
    1
    71
    -c-a
    36
  • [keep-balance] Do not delete blocks referenced by collections with replication_desired=0
    9967
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench UI] Pipeline instances should have a link to view the CWL file used.
    9802
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [CWL] Creating intermediate folders in working directory (fails in cwl-runner)
    9755
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] UI should advance to new step when user submits their input
    9750
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] Secondary files entering into Arvados automatically
    9747
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Crunch2] Five CWL conformance tests are failing with Crunch2
    9702
    Bug
    1
    New
    1
    71
    11
    -c-a
    36
  • [CWL] cwl-runner parses nested arrays repetively
    9588
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Corrupt discovery document should be handled better
    9521
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [keep-balance] "Expedited delete" tool: perform garbage collection on some specific (recently deleted) collections, bypassing usual GC race protections
    9364
    Feature
    2
    New
    1
    3.0
    3.0
    71
    -c-a
    36
  • [CWL] arvados-cwl-runner should reuse the most recent run
    9362
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] Jobs crash when arvados/jobs:latest is not suitable to run CWL jobs
    9659
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch2] crunch-dispatch-slurm can't successfully dispatch work when run from a directory it can't write to
    9630
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch2] Document/fix handling of collections with non-nil expires_at field
    9278
    Story
    6
    In Progress
    2
    1.0
    1.0
    71
    11
    -c-a
    36
  • [Data manager] Verbose reporting
    8912
    Story
    6
    In Progress
    2
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Times out before API server loading active pipeline instances
    8504
    Bug
    1
    Feedback
    4
    0.5
    0.5
    71
    -c-a
    36
  • get rid of dependencies python-pyasn1 python-pyasn1-modules
    7977
    Bug
    1
    New
    1
    71
    -c-a
    36
  • arv-mount is too slow for strelka
    7747
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Aggressively throttles node creation requests when the cloud region is full
    7479
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [NodeManager] CloudNodeListMonitorActor stopped reporting, and logs are not helpful enough to diagnose
    7667
    Bug
    1
    In Progress
    2
    1.0
    1.0
    71
    -c-a
    36
  • [Deployment] Upgrading Rails packages on CentOS uninstalls them
    8371
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] PySDK fails to load CAs for SSL verification when run inside Conda
    8669
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] repositories/get_all_permissions method is too slow
    8787
    Bug
    1
    Resolved
    3
    71
    -c-a
    36
  • [Crunch] crunch-job can miss the final log output of a job
    8721
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] When we give up trying to write a block, the next operation on the file should fail
    8148
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDK] arv-put should save manifest text on API error
    8910
    Bug
    1
    Resolved
    3
    71
    -c-a
    36
  • [Workbench] Bad URL quoting/parsing in File links from the pipeline template Components tab
    9156
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Python SDK] Add a Collection method to efficiently concatenate files
    9136
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Crunch] Limit maximum wait time between retries
    8774
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Crunch] [UX] Standard excepthook to help debug job problems
    7328
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Crunch] Jobs should log the hardware of their compute node(s)
    8196
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] arv-copy fails to copy a Docker image specified with repo:tag syntax
    8315
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] The "Log" tab should have an notification that the job has been queued
    8901
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Less logging of tracebacks for routine exceptions
    8894
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Bad compute node address detection on private networks
    8346
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] WebSocketClient Exception 'NoneType' object is not callable
    8388
    Bug
    1
    In Progress
    2
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] Log throttling shouldn't throttle logs from crunchstat, crunch-job
    8552
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] Add --umask, --fmask, --dmask options to control file permissions
    7831
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Bad use of RetryLoop in events.py
    9141
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDK] arvados.arvfile.readall_decompressed() does not return all blocks on a file
    7156
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] Job was repeatedly retried on same bad compute node until abandoned
    8869
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] Many tutorial instructions are wrong outside Curoverse clusters
    8387
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] No user profile should be required in the default configuration
    8830
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Docs] Document Git 1.7.10+ dependency for shell node and HTTPS Git cloning
    8778
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Docs/Workbench] Document how to clone repositories over HTTPS
    8781
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Docs/Workbench] Improve SSH agent documentation
    8775
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Hide file preview buttons when preview isn't possible with current keep-web config
    7743
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [PySDK] API client logs a warning when you create an object without an owner_uuid
    8885
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Node Manager] Broken nodes always get shut down, exempt from all node-counting considerations
    7980
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Node Manager] Shut down nodes in SLURM 'down' state
    8000
    Story
    6
    New
    1
    71
    -c-a
    36
  • [NodeManager] Use sys.exc_clear() to release exception tracebacks
    8541
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Support (ephemeral) EBS storage for AWS node types that do not have instance storage, like the M4/C4 classes.
    8186
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Node Manager] Minimum idle time before node is eligible for shutdown
    8551
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Node Manager] qr1hi nodemanager can't start if ulimit is in place
    8686
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] arv-get should use new PySDK Collection APIs
    7824
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Doesn't convert units when determining if a job's scratch request is satisfiable
    8084
    Bug
    1
    In Progress
    2
    0.5
    0.5
    71
    -c-a
    36
  • [API] Go code to connect to the API server database and make basic sense of it
    8565
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Go code to implement the Arvados API permissions model
    8566
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] List queries using "distinct" option return incorrect number of items_available
    8638
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Should not be necessary to host git repos on the same host as API server
    6772
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [FUSE] Listing a project directory is slow when there are many subprojects
    8189
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • [FUSE] arv-mount should detect and log any files/dirs that are still open after unmounting
    8163
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [FUSE] Reset mount-tmp to the state of another collection
    7973
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Update run-command to use arv-mount --mount-tmp instead of staging directory
    7847
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [API] Job model validates that the script exists in the repository at script_version
    7621
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Port arv-keepdocker to use the docker-py library
    9428
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] `arv keep docker` can upload an image already saved as .tar
    9045
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] `arv keep docker` can make links for an image already in a collection
    9147
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Clients can specify which auth config file to load.
    3897
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] PySDK one_task_per_input_file should support a num_retries argument
    7660
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] arv CLI program accepts "-" and "/path/to/file" as values for parameters that expect JSON (most notably the "body" parameter)
    8212
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] arv-copy continue on error
    8314
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDK] arv-copy better Git repository error reporting
    8313
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] arv-mount exits non-zero if any I/O errors were returned
    8363
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Asset pipeline does not work unless config/environments/production.rb is present at buildtime and runtime
    6753
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] CSS+images missing on login_failure.html
    7312
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] crunch-dispatch should run the bundled version of crunch-job specified by Gemfile.lock
    7880
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] [Workbench] config:check catches and reports YAML parsing errors
    8195
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SSO] [API] [Workbench] Have config:check sanity check secrets
    7323
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] [Workbench] Check for nonexistent config params during rake config:check
    7694
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [CRUNCH] Fail gracefully when arvados repo doesn't exists
    8121
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Keep] keepstore status.json should report runtime environment
    7024
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Crashes with Fiddlesticks when trying to view a pipeline instance graph copied from another cluster
    7008
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] [Fiddlesticks] Live job log should show recent history
    5846
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Doesn't explain why a job can't be cancelled
    8399
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Show all known runtime_constraints in job status pane
    8091
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Node Manager] Detect and shut down nodes that fail provisioning in Azure
    8515
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Keep] Keepstore and keepproxy support HTTP Range requests
    3734
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] [FUSE] Python SDK and arv-mount use Range requests when a caller requests part of a block that has been ejected from the cache
    8228
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [API] Job log cleaner should not clean logs when the job's log is the empty collection
    7127
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] Document that arv-copy accepts collection PDHs (ie content addresses) as arguments
    7818
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] Recursive pipeline instance arv-copy doesn't copy job objects, losing metadata
    7001
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] Unhelpful translation of script parameter outside script_parameters
    7600
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [node manager] Upgrade to libcloud 1.4+
    8999
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SSO] Template calls undefined method after fresh local accounts installation
    6868
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Unhelpful 404 stack trace when trying to arv-copy a collection without access
    7418
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [git] "git clone https://..." with a bogus token should respond 4xx, not 5xx
    6780
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Keep-store] make keep-store lookup token at runtime like keep-proxy does
    7725
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] arv-copy continues copying when a collection's content address is wrong, but warns and exits a special code
    6968
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDK] arv-copy automatically creates new repository(ies) on the destination cluster
    5676
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] Teach arv-copy to copy whole projects
    6840
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] `arv keep docker` supports `repo:tag` image name scheme
    8333
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] node visibility as admin vs ordinary user does not line up
    7400
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Keep] keepproxy should log real IP address
    7120
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • ubuntu package libarvados-perl should depend on libcrypt-ssleay-perl
    7823
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] Refresh Google OAuth2 setup in SSO install guide
    8330
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Docs] Install guide keepstore runit script has bad syntax
    8348
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] RVM and passenger recipes are missing details
    7129
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Deployment] arvados-api-server-upgrade.sh should set up git_repositories_dir
    6883
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [login-sync] Sets up settings.conf
    8344
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Documentation] Various small bugs in the CLI SDK install guide
    7170
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] Various small bugs in the install guide
    7356
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] keep-web runit script depends on sudo configuration
    8349
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] Clarify PostgreSQL setup commands for Software Collections users
    8331
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Docs] Install guide missing Websockets details
    8372
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Wiki] Clean up Computation_and_Pipeline_Processing page
    8621
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs/Deployment] MUNGE, Nginx, PostgreSQL services don't start on boot on CentOS 6
    8683
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] Install guide incurs RVM's sudo wrath
    7575
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Docs] SSO install guide documents default_link_*
    8329
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Install guide explains a few different deployment options
    7342
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Documentation] FUSE documentation should note granting FUSE permissions
    7230
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Make keepproxy install guide follow nginx conventions
    6919
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] Write integration test for when arv-put resumes from a cache with expired access tokens
    8937
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Tests] Make slow tests optional (e.g., run-tests.sh --short)
    9017
    Feature
    2
    In Progress
    2
    71
    -c-a
    36
  • [Keep-web] Generate directory listings
    8784
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Many shell node instructions are wrong outside Curoverse clusters
    8386
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] view log via keep-web test fails in arvbox
    8223
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDK] "gem install arvados" fails on ruby <2.2.2 since activesupport 5.0.0 came out
    8222
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] specifying an invalid filter should result in an error
    7166
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Support numeric filter comparisons for numeric fields
    6992
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Synthetic collections include the "kind" field
    9150
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Deployment] Test distribution packages
    7184
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench/API] Does not derive key name from comments with whitespace
    8538
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] [Maybe] Update API server to support Git 1.7.2
    6922
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Mishandles stop signals
    7026
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] a node filled up its /tmp which killed slurm and docker, node unusable. Node manager did not kill the node.
    6996
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Trying to update a collection by PDH raises a NoMethodError
    9143
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] "order" params should be rejected or used (not silently ignored) even when they reference columns missing from the "select" param
    6240
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Accept collection UUID as a job's docker_image constraint
    7695
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Finalize and document the collections/provenance and collections/used_by API calls
    9148
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Keep] keepstore should notify sysadmin about error conditions (trying harder than just log.Print())
    7232
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Remove ruby dependency from arv wrapper
    4730
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] arv-copy should not require --dst-git-repo when copying on the same cluster
    4431
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] Python Keep block-r/w errors should indicate which collection/file was unreadable/unwritable as a result
    6276
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] arv-put progress meter scales based on file size, rather than being fixed to MiB
    6387
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] arv-copy raises an unexpected backtrace on ^C
    6959
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Out of memory when using arv-copy not handled gracefully
    8065
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Recursive arv-copy should report progress of the entire copy, in addition to individual objects
    8379
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] Refactor arv-get/put/copy into the Python "arv" wrapper using common exception-handling and argument parsing
    5468
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] Ensure `arv keep put` replicates properly
    7476
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Go Keep client enforces a minimum transfer rate for proxy connections
    7477
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] [SDKs] Ensure FUSE and other SDK clients work with a default replication level != 2
    7473
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Fetch all results with the CLI `list` command
    8502
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] arv-put's default output includes both collection UUID and PDH
    8415
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] arv get (and edit) should support a flag that suppresses display of non-writable attributes like "status" and "writable_by"
    8213
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Add client-side join switches to `arv foo list`
    8501
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] GoSDK arvadosclient parameters are more transparent
    8498
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] PySDK Collection class lets you iterate files and subcollections separately
    8838
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Git credentials helper in CLI tools
    8780
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] CLI tools install tab completion aids
    8022
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] arv-copy copies all metadata associated with an object
    7394
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Can't `arv get` a collection by PDH
    9144
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Go SDK's arvadosclient and keepclient should share http.Client objects by default
    9005
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Pagination sets limit on last page, causing unintended side effects
    7385
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Copying jobs causes "SubmitIdReused" error if submit_id is not null
    6439
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Project listings act like file manager directory trees, with expanding+collapsing trees
    8562
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Remove Keep disks link?
    6920
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Ability to create a new project when creating a new pipeline instance
    8560
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] User admin interface should show which VM(s) the user can login to
    7830
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] workbench move and copy is incomplete
    7002
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] warn user when navigation will cause input text to be lost
    7003
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Pipeline template description display is difficult to read when making a pipeline template instance
    6436
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Visible blanking between partial content reloads
    6363
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Change project "Jobs and pipelines" tab to just "Pipelines"
    8486
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Add an "invert selection" button to checklists alongside "un/select all"
    8221
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [git] Should be able to clone git repositories that are shared with "anonymouspublic" without authentication
    8318
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [FUSE] With --exec, expose the mount point in an environment variable
    7990
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] arv-mount usage message shows incorrect order for [--exec ...] option
    8294
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] crunch-job does not sufficiently sanitize job parameter names when putting them in the environment
    7404
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [crunchstat-summary] jobs with tasks_per_node>1 need node size recommendations adjusted
    8151
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Keepstore] Support a portable data challenge API
    8181
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Keepstore] Don't trash/delete blocks until they appear on multiple trash lists
    8180
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Do not accept an empty SSH key as valid
    6601
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Project description styled differently based on whether or not the user can write to the project
    6571
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Keep] multiple response.Writeheader calls
    6991
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] `arv create` creates an object from an empty file
    6921
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Deployment] Update Rails package dependencies
    8327
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Add Gitolite sanity check to install guide
    8058
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Docs] file_names Collection field is undocumented
    8873
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] arvados Red Hat repo definition includes gpgkey
    8326
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Deployment] .yml.example files should be consistent
    8328
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Document installing the PySDK at a different PREFIX
    7158
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] A user with an older install may land in a page that requires the "latest" prerequisites.
    6886
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Displays content at the top of the dashboard, set by the sysadmin
    7468
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Provide an interface for the sysadmin to set Dashboard banner content
    7469
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Provide an interface to delete files from collections
    7470
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Provide a CLI tool to add files to an existing collection
    7471
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Provide a CLI tool to remove files from a collection
    7472
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Advertise anonymous token in discovery document
    7141
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] Crunchstat and arv-mount print final stats before exiting
    7845
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Pipeline template listings should include links to the scripts
    7411
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Reusing ArvadosResourceList results in inconsistent results
    7100
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [keep-web] Cache keep_services list between requests
    7595
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] CLI tools support Mac
    7439
    Story
    6
    New
    1
    71
    -c-a
    36
  • [GATK Queue] Support a mechanism to redirect stderr for children
    8773
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Docker] API server starts before PostgreSQL is ready
    7000
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docker] Bootstrap font fails to load in Workbench Docker image
    7007
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docker] Fix SSO configuration in published images
    7006
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docker] API server uses omniauth.rb for SSO configuration, not application.yml
    7005
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docker] Workbench image doesn't serve HTTPS
    6998
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Keep] Write performance tests
    6784
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Performance] Compare Collection performance benchmarks across components
    6783
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] [Workbench] Generate debconf template from config yaml
    6782
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [FUSE] Add a --replication switch
    7474
    Story
    6
    New
    1
    71
    -c-a
    36
  • [DRAFT] [Workbench] More encouragement for users to send feedback
    6570
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Keep] keepstore reboots GCE host under heavy load
    6997
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • [Workbench] Provide a GUI interface to arv-copy
    6606
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Whenever `arv` has an invalid resource name argument, it should complain about that
    6599
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] [Webshell] Rough edges in web shell
    6574
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Anonymous user is listed in the "Share with users" popup when anonymous viewing is disabled, while "Share with groups" popup omits the anonymous group
    6677
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] document installation of node manager
    6635
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] webshell installation
    6649
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • Port arvados-libpam to centos
    6517
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] Add runtime option to SDKs (esp Python and arv-mount) to use a filesystem directory block cache as an alternative to RAM cache.
    3640
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [DRAFT] Provide one clear way for users to get data from an external source into Arvados
    5914
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] [API] Support "world-readable, but not world-searchable" permission on projects: "anyone with the link can view"
    6442
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] CLI SDK tools use Ruby SDK
    7099
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Allow additional curation of the public projects listing
    6405
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Deployment] [Documentation] Minimize system-wide dependencies for compute node setup
    6348
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Go SDK locator regexp (and its tests) should agree with the documented format
    6318
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Node Manager] Booting nodes shouldn't satisfy min_nodes
    6313
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Maybe] [SDKs] Support caching Keep blocks in memcached
    6311
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] Support scaling the internal block cache based on number of open files
    6310
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Public project listing should exclude subprojects
    6307
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Fix config file race condition and improve test cases for DNS update hooks
    6304
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • Propagate stderr from all srun uses (e.g., clean-tmp and docker-install should have what install script got in #6094)
    6191
    Feature
    2
    In Progress
    2
    2.0
    2.0
    71
    -c-a
    36
  • [API] [Workbench] Home project should be a real object (group with group_class="project"), not current_user.
    6274
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Add social sharing buttons to public projects [and other data?]
    6175
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Propagate old search engine meta tags in sync with Open Graph data
    6174
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Make public data crawlable
    6173
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Breadcrumbs can occupy multiple rows when the screen is narrow
    6172
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Support searching collections by their collection name
    6130
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Include a mechanism to automatically trust some clients
    6642
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] walk api server installations and ensure modified_at for collections is unique + ensure modified_at is enforced to be unique at the api level.
    6076
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Keep] Design: using Arvados to browse, and run jobs on, input data that is stored remotely (not on local Keep disks)
    5098
    Story
    6
    In Progress
    2
    0.5
    0.5
    71
    -c-a
    36
  • [Keep] Use data stored remotely (not in local keepstore)
    5414
    Feature
    2
    In Progress
    2
    3.0
    3.0
    71
    -c-a
    36
  • [SSO] Authenticate users with OAuth2
    6025
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] The collection information box values for content address and content size should be updated automatically after new file(s) are added via browser upload.
    6020
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] `ls` in a large home directory (4400+ items) takes too long
    6019
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Use download service instead of passing Keep data through Rails
    6312
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SSOs] Support authentication against multiple backend LDAP servers
    6015
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Keep] Use bufferpool in keepproxy to limit memory use when there are many concurrent PUTs
    5962
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • Slow to log-in to Workbench
    5952
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [DRAFT] [Workbench] Users can be notified about changes to important pipelines
    5949
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Provide additional guidance to users running their first pipeline
    5947
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] "other collections have the same content" page is confusing
    5946
    Bug
    1
    New
    1
    71
    -c-a
    36
  • arv-get is slow for this collection
    5945
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Syntax highlighting of viewing source in workbench
    5928
    Feature
    2
    New
    1
    71
    -c-a
    36
  • Keep errors
    5919
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Fiddlesticks when trying to view a log file
    5923
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] PySDK's internal decorators lose method metadata
    5907
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] collection#show performing too many unnecessary API server requests when accessing qr1hi-4zz18-zn1m6s2le7dqjfs.
    5908
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] crunch-dispatch should mark a job failed when its repository cannot be fetched
    5906
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Improve certificate validation in Python SDK
    5905
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] collection#show is unresponsive for a large collection
    5902
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Improve performance of large requests in parallel
    5901
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDK] Implement arvados.gettaskparam(*args) to match arvados.getjobparam(*args)
    5900
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [FUSE] Catch and recover from any API client exceptions
    5897
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] Ensure all I/O errors properly distinguish "not found" and other API errors
    5896
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] collections#index returns 504 Gateway Timeout
    5892
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] PipelineInstancesTest#test_Create_and_run_a_pipeline is not reliable
    5878
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docker] Needs smarter dependency ordering when restarting existing containers
    5876
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Mobile menus lack contrast (gray text on aubergine)
    5874
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] Run a local job using a docker image directly from the shell VM (without writing the docker image to Keep)
    5865
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • All clients authenticate directly against SSO server without going through API server
    5850
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] [DRAFT] Provide API methods for manipulating and combining collections
    5781
    Story
    6
    In Progress
    2
    2.0
    2.0
    71
    -c-a
    36
  • [Crunch] crunchstat should not report errors during normal timing races
    5523
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Relax repository name constraints to permit [-_.] -- ideally allow anything github allows
    5840
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Create new collection with selected files copy streams as well as files
    5828
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] Dry up KeepService get() and put() in arvados/keep.py
    5788
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] arv keep docker --download to get image from Arvados
    4223
    Feature
    2
    In Progress
    2
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Support entering boolean script_parameters when editing a pipeline instance
    5782
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [OPS] Routinely check for stale Gemfile.lock
    5769
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Websockets subscribe API should accept a start timestamp, so clients don't have to miss any events logged between the given start time and websocket connection success.
    5767
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Link to script sources on github when repository is a github url
    5841
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] [DRAFT] Fix clock/node time reporting on Workbench pipeline page
    3989
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [OPS] Add diagnostics script for shell nodes
    5740
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Node Manager] Reuse node records after shutting down the cloud node set up with them
    5736
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Replace type-specific #index pages with generic code
    5743
    Bug
    1
    New
    1
    2.5
    2.5
    71
    -c-a
    36
  • [Workbench] Provide a guided workflow to new users who want to upload data and run a public pipeline
    6058
    Story
    6
    New
    1
    2.5
    2.5
    71
    -c-a
    36
  • [FUSE] cd/ls sometimes takes too long on su92l
    5662
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] File access sometimes takes too long on su92l
    5713
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] Document the minimum docker image / Dockerfile that can be used to run a job.
    5035
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] one_task_per_input_stream fails due to unsupported APIs. Remove it from docs, examples, and SDK.
    4696
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Delete and rename files in collections
    3821
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Missing link target in iframe error message
    5820
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Make Dashboard contents filterable
    5669
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Favorite projects, pipelines, collections
    5668
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Indicate related pipeline instances
    5667
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Link to log from pipeline and/or job summary page
    5665
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] 504 error returned when trying to create a large new collection
    5614
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Pipeline instance "Re-run with latest" button occasionally returns Not found page
    5235
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] There is no way to silence arv-put and arv-get
    5652
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [FUSE] Support efficient copy at command line
    5778
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Docker] Store postgres and gitolite data in a separate data volume from API container.
    5613
    Feature
    2
    Closed
    5
    71
    -c-a
    36
  • [Docker] Shell container should add user accounts when login permission links are added (e.g., from workbench admin interface).
    5625
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Workbench] Log Graph - Feature requests
    4835
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Improve presentation of anonymously-viewed collections (via both "sharing link" and regular copy-and-pasted Location)
    5415
    Feature
    2
    New
    1
    2.5
    2.5
    71
    -c-a
    36
  • [API] [Workbench] [Performance] Use object caching to improvement performance (such as memcache).
    5624
    Story
    6
    New
    1
    71
    -c-a
    36
  • [DRAFT] [API] Good API for accessing the old_ and new_attributes in Logs table properties column
    5560
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] PySDK test_rewrite_on_empty_file is not reliable
    5496
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] [Performance] Combining big collections should start returning a response faster (currently you can get a 502 proxy error even if the collection still combines)
    4943
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] Node went away unexpectedly during pipeline run.
    5381
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Improve SDK documentation
    5621
    Story
    6
    New
    1
    71
    -c-a
    36
  • Replace the ApiClient is_trusted attribute with a per-{user,client} flag which is set by the user when logging in with a client for the first time.
    3040
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Crunch] crunch-dispatch should use the API instead of running in the API server's rails environment.
    5162
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [API] [Workbench] Add read-only ("locked") flag to projects
    5582
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [OPS] Use packer to generate docker images for our various services
    5118
    Feature
    2
    In Progress
    2
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Workbench should support viewing VCF files
    5511
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [DRAFT] [Crunch] User can configure task retries
    5510
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Change "recent pipelines" to curated selection of "public pipelines"
    5495
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Documentation] Run an uncommitted script straight from a working directory using arv-run-pipeline-instance --run-here
    5494
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Crunch] Job logs include node-level resource usage statistics (cpu, ram, swap, etc)
    5459
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [DRAFT] [API/SSO] Use externally-defined (e.g., LDAP) groups as permission groups
    5413
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Tests] Enhance keep testing to support signed locators.
    5428
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] Add Python version test 2.7 <= sys.version_info < 3
    5137
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • Job failure due to 'arv-put' 'ConnectionError'?
    5515
    Bug
    1
    Feedback
    4
    71
    -c-a
    36
  • [Docs] Note apt key information in Python package READMEs
    5127
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDK] CLI tools should catch socket errors like "Connection refused"
    5327
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] arv-put --description X --properties P should set respective attrs on new collection.
    5201
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Testing] Make run-tests.sh able to run only unit tests or integration tests (or both)
    5254
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Testing] Add a new unit-test-only build step to the build pipeline, before the current test step that runs integration tests
    5255
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] Contain all job/task containers in a memory-limiting cgroup
    5540
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Node Manager] add one integration test for node manager
    5267
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] arv keep put blows up when trying to put a danging symlink
    4957
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [OPS] Write a wrapper script that calls packer to generate customized docker images for a new installation (with IP ranges, hostnames, etc preseeded)
    5119
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Documentation] Fix Go SDK comments so they look reasonable in godoc
    5451
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] arv-run-pipeline-instance should accept project and title parameters
    5138
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Show footer with date last updated
    5245
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] API token provided in query string should not be ignored just because the session already has a token.
    3625
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Tests] Provide a docker image, based on puppet/packer process, that can run the entire test suite quickly.
    5439
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [DRAFT] [Workbench] Improve provenance/used-by graphs so they are legible even for large pipelines / long provenance trails
    5387
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [DRAFT] [Workbench] Improve display of pipelines and jobs
    5384
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • Improvements to sortable log viewer
    3022
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Enable users to share with any other user
    5297
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Documentation] arvados VM simulator, demonstrating how it looks to use Arvados from CLI
    5382
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [DRAFT] [Workbench] Browse change history for records
    5316
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Docker] Auto setup as much as possible for new users
    5284
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDK] Go KeepClient offers a "read block" API that recovers from transmission errors by attempting alternate servers.
    5391
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Buttons should have consistent ctrl-click and right-click behavior
    5541
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docker] Make API server root URL in discovery document easier to resolve
    5147
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Additional settings for ssh/config from Manage Account page
    5307
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Extend Sharing tab to collections
    5296
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Tests] Implement long-running keepstore services in run-tests, similar to what api got in #3021
    5260
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Tests] Reduce dependency on integration tests
    5259
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Public project page should encourage visitors to try using Arvados themselves
    5193
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Pipeline re-run dialog should offer docker image choices (latest/same), similar to script version choices
    5237
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Use sphinx to render for Python SDK docs
    5214
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Tests] Add crunch-job functional tests to the CI suite
    4254
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] CLI tools fail or warn when current working directory is gone
    5134
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [DRAFT] [API] Enrich supported dataclass values for pipeline templates
    5142
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Add "trash" behavior for all object types, instead of literal rdbms "delete"
    3150
    Story
    6
    Rejected
    6
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] User can trash and un-trash items
    5032
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] arv-get should support getting multiple files by shell glob
    5139
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Crunch] Use uncommitted code in a git work tree to run a dockerized crunch job in a VM (using crunch-job or arv-run-pipeline-instance --run-jobs-here)
    5133
    Feature
    2
    New
    1
    2.5
    2.5
    71
    -c-a
    36
  • [Crunch] arv-run-pipeline-instance --run-jobs-here cannot run jobs with local script path in script_version.
    4048
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] Refactor run-command so it can be used as an SDK by scripts in a git tree
    4561
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] CLI tools support project paths in addition to uuids
    5097
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [FUSE] Provide a unique mount subtype
    5036
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] improve error reporting for failed AJAX calls
    4938
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Suppress "ajax failed" error messages when ajax fails due to browser navigation event.
    3691
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Deployment] Switchyard should behave correctly when one SSH key has access to multiple VMs using different usernames.
    4989
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] File access on keep mount giving I/O error
    3948
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] Crunch v2 design doc
    4609
    Story
    6
    Resolved
    3
    1.0
    1.0
    71
    -c-a
    36
  • [Tests] Eliminate system globals in test suites
    5233
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] after file upload, the files tab should refresh immediately (overriding the 15 second throttle)
    4770
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Docker] Web upload stuck at "upload in progress"
    4886
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] Improve metadata created by arv-put
    3311
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [API] Prohibit leaving jobs in an inconsistent state (e.g., state=queued with non-null log or output)
    5026
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] CLI tests should be better isolated from user configuration
    4821
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Workbench provenance graph tabs appear empty when graph is very large
    4805
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Docker] fix @_NOT_FOUND_@ hack in config.rb
    5068
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Replace schizophrenic generic "groups" page with "roles" page that only creates/lists groups with group_class="role".
    5076
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Keep] Keepstore queries API server to verify tokens
    3532
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Merge "user agreement" and "required profile fields" into a single page
    4744
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Crunch] Automatically restart jobs after internal/intermittent errors
    5064
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Docker] Make it easy to add data from the host system to containers
    5025
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Pilot material design theme
    5007
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Make pipeline rerun UI more like jobs'
    5094
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Node Manager] EC2 driver creates nodes configured to terminate on shutdown
    5065
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Node Manager] Don't reuse node table records
    4129
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] When showing a shared project, do not include "Home" in breadcrumbs.
    3573
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] Choose worker nodes where the desired docker image is already available.
    4935
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Tests] When comparing pipelines, the graph should highlight the differences by using different colors for pipeline A/B/both.
    4358
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Page for downloading collections with anonymous sharing link does not have any styling.
    5021
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation/FUSE] Document '.arvados#collection' in shell VM keep mount
    4906
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] `arv keep docker` should pipe the data directly to Keep instead of store-and-forward, and provide some progress feedback up front in any case.
    5033
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Make "Compute and job status" pane update dynamically
    4881
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] File upload should start immediately, not wait for user to press "Start"
    5020
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] In search dialog, the preview panel on right should get cleared when the selection container (on the left side) is cleared.
    4921
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] Quick turnaround time when updating a docker image in order to re-run a job
    4833
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] When using "Run pipeline" button at the top of project A, the pipeline template chooser should start out showing project A, not "All projects".
    4841
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Workbench support for generating input UI from common workflow tool description documents.
    4605
    Feature
    2
    Resolved
    3
    2.0
    2.0
    71
    -c-a
    36
  • [Sample pipelines] Proof-of-concept support for common-workflow-language tool description in Arvados
    4035
    Story
    6
    Resolved
    3
    1.0
    1.0
    71
    -c-a
    36
  • [Documentation] Document using common-workflow-language tools with Arvados pipelines
    4564
    Support
    3
    Resolved
    3
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Editable "name" column is presented but not actually available for "other" objects such as Human and Specimen.
    4923
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] [DRAFT] arv-get with just one locator argument should download the entire collection
    4952
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Collection content hash should stay up-to-date (e.g., while uploading files)
    4771
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] run-command should show helpful error message when task.foreach argument is not a list
    4726
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Discovery doc should fix its incorrect "list" method description to be identical to "index"
    4767
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Run-command docs should remind user how & why to exit non-zero on failure.
    4579
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] arv-put should assume --no-resume when --raw is given
    4669
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Tests] Diagnostics suite tests that live logs are displayed while jobs are running.
    4635
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Prompt user when logging in to a client for the first time.
    4692
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [DRAFT] [Workbench] Prevent CSRF and XSS attacks
    4690
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [API] Rename nondeterministic to impure
    3555
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Search box on collections page should use infinite scroll instead of (broken) page number links
    3224
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Create and edit pipeline templates
    3490
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Projects dropdown should have a free text filter box
    4647
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • Improve bc-bio support on Arvados
    4600
    Support
    3
    Resolved
    3
    2.0
    2.0
    71
    -c-a
    36
  • [Crunch] crunch-dispatch's Bundler environment infects non-Docker jobs
    4750
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Remove success and running attributes from job data model, since we are now using the state attribute.
    4729
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Websocket client should only subscribe to events about relevant objects, not all events.
    4700
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Show more (earlier) log entries for a running job
    4530
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Docker] Check dependencies at top of build.sh
    4401
    Bug
    1
    Resolved
    3
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Introduce compute workflow / pipeline concepts in user guide
    4566
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Documentation] Best practices for getting the most out of job re-use
    4508
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Documentation] Set of introductory tutorials each focused on accomplishing a simple task
    4531
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Documentation] Tutorial for adding a crunch script wrapper for an existing tool that is already hosted on github.
    3223
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Sortable column headings (filename, size) in collections#show
    4460
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Disable auto-refresh on tabs with infinite-scroll or editable content.
    3387
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] Do more error-checking and show more diagnostic info when installing a Docker image
    4494
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] CLI tool to view real time logs from running jobs/pipelines, much like the Log tab of the Workbench PipelineInstance#show page
    3980
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] "Add data from another project" modal supports regex filtering
    4808
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] Option to watch logs (instead of exiting) when queuing a job or pipeline instance using arv job create, arv pipeline run, etc.
    4503
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] "Download" / "Save as" button for provenance graph
    4642
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Reveal log collection ID in pipeline/job summary and job Log tab
    3928
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Project show page should have buttons to add objects besides Collections
    3284
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [API] API method and CLI shortcut for refreshing the signatures on some block locators (without creating a collection)
    4650
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Display portable data hash, parent project, file count in Collection tables
    4393
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Job detail page should show the job status when the job is not running or has completed running (button that shows 'queued', 'not ready', 'failed', 'complete', etc)
    4539
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Explain why there are 21 jobs with log = ""
    4748
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Support canceling queued jobs
    4172
    Story
    6
    Resolved
    3
    1.0
    1.0
    71
    -c-a
    36
  • [API] Arvados clients can use standard OAuth2 protocol instead of custom token handling mechanism
    4919
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Each active job/pipeline on the dashboard should show how many worker nodes are allocated to it.
    4427
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Fiddlesticks when rerunning pipeline with edited template
    4451
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Job view should include the relevant component name(s) from each pipeline where the job was used
    4289
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Pipelines that are in New or Ready state should show up somewhere on the dashboard, (e.g., in "Active pipelines" or "Recent pipelines" table).
    4514
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Make duplicate name error message more user-friendly
    4394
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] "Manage" permission should be sufficient to edit project's name/description
    4416
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Provide feedback on dashboard to indicate that NodeManager is booting a node.
    4446
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] "arv recent [objectType]" lists recently modified objects
    4502
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Crunch] Pipelines should not fail immediately after one job failure, but continue running as much as possible
    4302
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Documentation] "Writing a Crunch script" is mysterious
    4440
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [OPS] Improve and automate non-shared VM configuration
    4500
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Report a Problem" menu item does not like being opened in a new tab/window.
    4452
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Don't show empty projects/collections when using the chooser dialog to select pipelines, files, etc.
    4516
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Tests] Websockets should work out of the box in test/development modes, even when using an ssh tunnel and a self-signed certificate.
    3101
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] Ensure Python and Go SDKs in a given situation always choose either proxies or disks, never some of each.
    4529
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] websocket clients should not put API tokens in path or query string
    3037
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [API] [Workbench] Site-wide regex searching
    4442
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Add a "docker images" page to Workbench that lists available docker images
    3125
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [API] [SDKs] Include provenance information for uploaded Collections
    4404
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] [API] "Manage" permission should be sufficient to delete subprojects
    4182
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [DRAFT] [Workbench] Tour Guide Dax follows you around for a while, showing you something reasonable that you can do next.
    4443
    Story
    6
    New
    1
    2.5
    2.5
    71
    -c-a
    36
  • [Workbench] Order by Collections "Name" column puts "folders" (collections containing files) at the top
    4350
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] When editing a template in arv-edit and faced with a parse error, when trying again, it should automatically take you to the line/column of the error
    4349
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [API] API method and interface to check if a bugfix is deployed on a cluster
    4175
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [OPS] Implement new deploy procedure
    2897
    Feature
    2
    In Progress
    2
    3.0
    3.0
    71
    -c-a
    36
  • [OPS] System-wide logging and reporting
    3966
    Feature
    2
    Closed
    5
    3.0
    3.0
    71
    -c-a
    36
  • [Crunch] Improve node startup speed. 15 min is too slow.
    4335
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] arv create needs --project-uuid and --name parameters for appropriate classes
    4343
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Docker] Fix supervisor.conf to supervise services instead of running init.d start script and hoping everything is OK
    4324
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] run_command should use SDK's retry support
    4009
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] as admin user, permission denied canceling a job (started by another user)
    4273
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] default .ssh/config instructions should specify cluster name
    4265
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [DRAFT] [SDKs] arv-keepdocker should be smarter about caching the image to upload
    4438
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] Email notification when pipeline finishes, depending on user prefs flag
    3829
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Crunch] Task stdout appearing in job logs should be labeled "stdout" instead of "stderr"
    4028
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Project chooser dialog should have a "create new project" button.
    3226
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Keep] Improve speed of /index requests
    4218
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Keep] Rename -enforce-permissions to -bypass-read-permissions with default=false; let data manager functions work irrespective of this flag.
    4222
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Show how to run a pipeline instance without using a template.
    4238
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Documentation] Update and expand user/tutorials/tutorial-keep-mount.html to show practical ways of finding data via FUSE mount.
    4237
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [API] Jobs that sit in the front of the queue for a long time without running should be cancelled
    4256
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Crunch] Add unit and functional tests to crunchstat test suite
    4284
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDK] Make arv keep docker smarter about storing docker layers, thus making uploads of changed images (much) faster
    4193
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDK] arv-copy collection copy performance
    4309
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] Implement "arv keep less" and "arv keep check" natively instead of hoping whless and whcheck are installed.
    4255
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [API] Link model validation allows only Users and Groups to get can_read, can_write, can_manage
    4118
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] move Job script/repository/docker validations from controller to model
    4123
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Keep] "Shared" directory in arv-mount doesn't show non-project groups that own projects
    4191
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Users activity page link is gone for non-admin users with read-only admin permissions. Users activity page only shows own activity for non-admin users with read-only admin permissions.
    4116
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] api server docker_images endpoint
    4288
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Investigate and try to address RAM use
    4305
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] [obsolete?] Pipeline state can be failed even though every job is complete.
    4120
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDK] can't make an anonymous token from the cli
    4344
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] arvados.collection.Manifest classes for manipulating collection manifests
    4137
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [API] User should be able to delete a project even though dependent logs exist
    3688
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Keep] [DRAFT] Use stronger hash algorithm (such as SHA-2) for Keep blocks
    4424
    Story
    6
    New
    1
    5.0
    5.0
    71
    -c-a
    36
  • [Crunch] Jobs need code from multiple git repositories
    3820
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Pipeline timing number oddities
    3999
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Support incremental loading of long job logs, using Range requests starting at byte >0
    4131
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • Add code coverage report for workbench javascript
    4090
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDK] New keep mount is very slow on initial usage
    3855
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [API] Non-admin users should see all nodes with crunch_worker_state busy/idle, regardless of ping age.
    3976
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Add unit test infrastructure (and some examples) for JavaScript assets
    4132
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [DRAFT] [Docker] Make local Docker install more useful for development
    3333
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] CLI 'arv pipeline run --run-pipeline-here' should change instance state from 'ready' (or 'not running'?) to 'RunningOnClient'
    3974
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] JavaScript refactoring
    4128
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] pipeline instance that is RunningOnClient should be rendered as Running, not Ready.
    3834
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] Add a rate limiting feature to arv-put and arv-get (like rsync's bwlimit)
    3803
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] After cloning a pipeline instance, the new instance should not have any cancelled jobs/components
    3973
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] permission_to_update should prohibit all changes to content-addressable attributes of a job record after the job has started.
    3954
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] arv pipeline_instance --help should work even if api server is not running / reachable.
    4041
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] crunch-dispatch errors that relate to a specific job should be available via event bus.
    4003
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDK] Command line tool to manipulate collection manifests
    4030
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Improve log viewer to more effectively expose relevant information for failed jobs
    3696
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] improved dashboard page
    3605
    Feature
    2
    In Progress
    2
    2.0
    2.0
    71
    -c-a
    36
  • [Docker] Run a 5-second diagnostic suite after bringing up docker containers.
    3987
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] Client libraries should retry failed API requests after errors like Gateway Timeout (part 2)
    3910
    Bug
    1
    New
    1
    3.0
    3.0
    71
    -c-a
    36
  • [SDKs] Command-line diagnostic suite reveals problems on a shell VM (e.g., arv-mount, SDK version skew)
    3964
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Render runtime-formatted timestamps as "8:00 am" or "Sep 23" etc depending on how recent.
    3955
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] inconsistent find_or_create behavior in pipeline runner vs job
    3831
    Bug
    1
    In Progress
    2
    0.5
    0.5
    71
    -c-a
    36
  • [API] Discovery document schema does not include generated fields like job dependencies
    3817
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Install man pages for CLI tools (auto generate from the --help content)
    3892
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Documentation] Avoid using the term "parallel" when referring to Crunch concurrency features
    3556
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Rearrange collection chooser to show a preview (file list) inline instead of in a separate preview pane. See [[Workbench UI images]]
    3298
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] Speculatively pre-fetch data blocks while reading from a collection.
    3768
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] Clients should warn when they're expecting a newer API server
    3812
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Use web notifications to alert user when pipelines finish
    3923
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDK] --project-uuid switch behaves strangely without = (seen in arv-keepdocker, arv-copy)
    3847
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDK] arv-put supports --ignore-symlinks
    3815
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Discovery document schema should include whether field on resource is writable or read-only.
    3818
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [API] Pipeline template (temporarily?) disappears after move to project
    3789
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] run-command should bail when $(file) expands to a nonexistent path
    3810
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch/SDKs] Tasks need more retry support
    3795
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Documentation] Present an efficient pattern for developing a pipeline template with multiple crunch scripts
    3511
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Compare pipeline templates, similar to the existing pipeline instance comparison.
    3633
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Crunch] Run dev (and real) jobs using a syntax as close as possible to "python foo.py input.txt"
    3347
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [API] Move system_group, system_user, etc to class methods in Group and User
    3622
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDK] Show the Workbench URI for the job when running a job or pipeline from the command line
    3365
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Improve chooser preview for collections, and add previews for objects that don't have any yet (pipeline instances, templates, jobs, projects)
    3445
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Show current user's compute node usage over time
    3701
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Admin button to download user list as CSV
    3157
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Ajax updated pages don't interact correctly with browser history.
    3470
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Sort by name before uuid in search results.
    3446
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Link to OFTC web chat on version/bugreport modal
    3279
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Remove redundant "updated_at" column
    3624
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • Write up PGP data curation plan
    2870
    Support
    3
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Crunch script can exit 111 to indicate transient failure (i.e., try running the task again up to N times)
    3386
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • "Choose folder" dialog when running a pipeline displays folders you can't write to
    3437
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docker] Loose ends in local docker install
    3329
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [API] Clean up exception raise/rescue usage, use 4xx and 5xx appropriately
    3416
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Crunch] crunch-job ignores task sequence
    3418
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDK] Show the API server URI for the new pipeline instance when running a pipeline from the command line.
    3355
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Can see job information but cannot access output collection
    3391
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docker] use local docker install for additional testing
    3336
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDK] After ^C, arv-put sometimes exits but leaves processes/threads behind that keep the resume file locked, preventing retrying the aborted arv-put.
    3352
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Sample pipelines] Make the multi-component bcbio-nextgen pipeline template work
    2991
    Story
    6
    Resolved
    3
    3.0
    3.0
    71
    -c-a
    36
  • [Tests] Non-destructive test script suitable for running on a production VM/server in order to verify correct operation of basic features.
    3163
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Deleting a job in a project doesn't show delete wipe animation, item does not go away until page is reloaded.
    3134
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Generic "attributes" tab renders uuid as a link to the object, with object type as link text, instead of actually showing the uuid.
    3166
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Keep] Keep uses appropriate HTTP status codes for failed DELETE requests
    3483
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Sample Pipelines] Run monolithic bcbio pipeline on tiny dataset. Package up into a project with description. Make public
    3319
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Documentation] Describe how to run tramp in emacs.
    3262
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Add "run" button to each pipeline template in project view
    3095
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Retrieving a nonexistent keep disk as an admin should not create a new keep disk.
    3115
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] Queued and running jobs do not get cancelled when a pipeline instance gets cancelled.
    3165
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Progress bar not fully green when all jobs/tasks complete successfully
    3073
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] resolve race condition in displaying logs from newly-completed jobs
    3164
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Add Go SDK page to doc site with examples similar to Python etc
    3043
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Moving a pipeline instance from a private project to a shared project does not also effectively share the component jobs.
    3172
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Generalize "re-run this job" button
    3045
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDK] Keep clients (e.g., arv-put and crunch-job) ask API to refresh blob signatures if expiry times are sooner than ETA of collection.create
    3199
    Story
    6
    New
    1
    3.0
    3.0
    71
    -c-a
    36
  • [Workbench] When comparing pipeline instances, show/highlight the differing values of script_parameters, instead of just highlighting the whole list of parameter keys
    3017
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Crunch] Pass script_parameters on stdin instead of JOB_PARAMETER_* environment variables
    3097
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • Pipeline has default name from pipeline template ("instance of X") and start time of pipeline is displayed along with pipeline instance name
    2932
    Story
    6
    New
    1
    71
    -c-a
    36
  • "Dump core" option when running a job (or every job in a pipeline): save the state of a failed task's container before tearing it down.
    3179
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • Display of the "Add a new keep disk" button in the keep disks page in incorrect in staging and prod. It appears right on top of the Recent tab. This needs to be pulled to the right similar to all other such buttons.
    3159
    Bug
    1
    New
    1
    71
    -c-a
    36
  • API server supports atomic find_or_create operation
    2176
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [API] Support query of "properties" field on objects
    4019
    Story
    6
    New
    1
    5.0
    5.0
    71
    -c-a
    36
  • Write design for joins in API
    2627
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • Security audit
    2661
    Story
    6
    New
    1
    71
    -c-a
    36
  • AJAX behaves strangely if login token expires
    3086
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Docs] Update Arvados permissions model in docs
    3711
    Story
    6
    In Progress
    2
    1.0
    1.0
    71
    -c-a
    36
  • set up dev ci server
    3895
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • Uploading files into docker image using keep
    3432
    Bug
    1
    Closed
    5
    1.0
    1.0
    71
    -c-a
    36
  • Workbench tests: app/controllers/projects_controller.rb
    4101
    Story
    6
    New
    1
    71
    -c-a
    36
  • Workbench tests: app/helpers/application_helper.rb
    4100
    Story
    6
    New
    1
    71
    -c-a
    36
  • Workbench tests: app/helpers/pipeline_instances_helper.rb
    4099
    Story
    6
    New
    1
    71
    -c-a
    36
  • Workbench tests: app/controllers/pipeline_instances_controller.rb
    4098
    Story
    6
    New
    1
    71
    -c-a
    36
  • Workbench tests: app/controllers/users_controller.rb
    4097
    Story
    6
    New
    1
    71
    -c-a
    36
  • Workbench tests: app/helpers/provenance_helper.rb
    4096
    Story
    6
    New
    1
    71
    -c-a
    36
  • Workbench tests: app/controllers/groups_controller.rb
    4095
    Story
    6
    New
    1
    71
    -c-a
    36
  • Workbench tests: app/controllers/jobs_controller.rb
    4094
    Story
    6
    New
    1
    71
    -c-a
    36
  • Workbench tests: app/helpers/vcf_pipeline_helper.rb
    4093
    Story
    6
    New
    1
    71
    -c-a
    36
  • Workbench tests: app/helpers/jobs_helper.rb
    4092
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Keep] DataManager automatically adds cloud storage when utilization is over 90%
    4527
    Story
    6
    Rejected
    6
    71
    -c-a
    36
  • [SDKs] Pipelines started from the CLI should set status to "Paused" when aborted
    3978
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Crunch] crunch-job should not retry tasks after its SLURM allocation is revoked
    4599
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Good Collection API for Python SDK
    4823
    Feature
    2
    In Progress
    2
    1.0
    1.0
    71
    -c-a
    36
  • [workbench] Enable in-browser preview for text files in collections
    5375
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Display duration on pipeline instance listings
    5646
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Provide more feedback about when a queued job is likely to start.
    4456
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Add search filter to "/links" page
    5793
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Support "display_order" (integer) key for pipeline template components. Obey when rendering pipeline summary/details in Workbench.
    2992
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Validate that selected columns are selectable, and return an error if not
    5738
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Should validate that a job's repository actually exists before rendering the link to avoid fiddlesticks
    5913
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Creating new job sometimes takes too long
    6086
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Re-connect to websockets when the connection drops; use "last_log_id" so nothing is missed.
    4706
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Display timestamps in user's local timezone using class="localized-time"
    3629
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Collection file trees are collapsible
    6407
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Crunch2] crunch-run uses docker/engine-api instead of dockerclient
    9132
    Story
    6
    New
    1
    1.0
    1.0
    71
    11
    -c-a
    36
  • [Docs] Fix flow of Rails servers' install guides
    8332
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
131
Interpretation automation
2020-06-23
2020-06-30
  • Incorporate coverage info from get-evidence dataset_reports in publication statistics
    9027
    Feature
    2
    New
    1
    131
    -c-a
    31
  • Arvados job: download data from remote site into Keep
    8707
    Feature
    2
    In Progress
    2
    1.0
    1.0
    131
    -c-a
    31
  • Trigger an arvados job to retrieve the data and import it into Keep
    8689
    Feature
    2
    In Progress
    2
    1.0
    1.0
    131
    -c-a
    31
  • Check for finished download/processing jobs
    8697
    Feature
    2
    In Progress
    2
    1.0
    1.0
    131
    -c-a
    31
  • When UserFile data is updated, if it has a suitable data type, submit report-generator jobs
    8698
    Feature
    2
    New
    1
    2.0
    2.0
    131
    -c-a
    31
  • Arvados job/pipeline generates ClinVar HTML report from VCF
    8701
    Feature
    2
    Closed
    5
    2.0
    2.0
    131
    -c-a
    31
  • Arvados job/pipeline generates GET-Evidence HTML report from VCF
    8700
    Feature
    2
    Closed
    5
    2.0
    2.0
    131
    -c-a
    31
  • Add report status/links to "show user_files" page
    8699
    Feature
    2
    Resolved
    3
    1.0
    1.0
    131
    -c-a
    31
  • Accept authenticated API calls from data providers to add datasets to a public profile
    8688
    Feature
    2
    Resolved
    3
    2.0
    2.0
    131
    -c-a
    31
  • Check UserFiles too when checking for Datasets that are ready to publish
    8710
    Bug
    1
    Closed
    5
    0.5
    0.5
    131
    -c-a
    31
72
Deferred
2020-12-30
2020-12-31
  • [Workbench] Report HTTP error instead of sending 0-byte file when error fetching from keep
    6754
    Bug
    1
    New
    1
    1.0
    1.0
    72
    -c-a
    36
  • [Node Manager] Add max_node_per_user config
    5768
    Feature
    2
    New
    1
    0.5
    0.5
    72
    -c-a
    36
  • [Workbench] Remove ActiveRecord dependency
    5471
    Story
    6
    Rejected
    6
    72
    -c-a
    36
  • [Workbench] reports "oops, request failed" rendering projects with very large collections
    5045
    Bug
    1
    New
    1
    72
    -c-a
    36
  • [API] Make user.send_profile_created_notification detect preference changes better
    4991
    Bug
    1
    New
    1
    1.0
    1.0
    72
    -c-a
    36
  • [Crunch] "stdbuf": executable not found in $PATH
    4977
    Bug
    1
    New
    1
    72
    -c-a
    36
  • [Crunch] port crunch-job to python
    4011
    Feature
    2
    New
    1
    3.0
    3.0
    72
    -c-a
    36
  • [Workbench] Should be able to browse "home project" of other users that are readable by you.
    3589
    Bug
    1
    New
    1
    72
    -c-a
    36
  • [API] Add migration to change collection uuids to portable_data_hash in old job script_parameters
    4756
    Bug
    1
    New
    1
    2.0
    2.0
    72
    -c-a
    36
  • [Metadata] As an adminstrator, I want to specify a required ontology for a given data type for a defined class of users
    4217
    Feature
    2
    New
    1
    72
    -c-a
    36
  • [Workbench] Hard to find user agreement after it has been signed
    3257
    Bug
    1
    In Progress
    2
    0.5
    0.5
    72
    -c-a
    36
  • [Workbench] Render textile markup in description fields
    3299
    Story
    6
    New
    1
    1.0
    1.0
    72
    -c-a
    36
  • [Sample clients] Ingestor utility responds to "ready to ingest" events by copying the specified files from staging directory to Keep and storing the collection in the specified group.
    2523
    Story
    6
    Rejected
    6
    3.0
    3.0
    72
    -c-a
    36
  • [SDKs] Python SDK Keep client can enable "HEAD before PUT" mode when writing. Expose this as an arv-put option.
    2706
    Feature
    2
    New
    1
    1.0
    1.0
    72
    -c-a
    36
  • [Lightning] Lightning Memory-Mapped Database
    1558
    Story
    6
    Resolved
    3
    72
    +c-a
    36
  • [Keep] Support transparent compression of blocks in Keep
    3491
    Story
    6
    New
    1
    72
    -c-a
    36
  • [Keep] Keep server supports SSL
    2293
    Story
    6
    Rejected
    6
    2.0
    2.0
    72
    -c-a
    36
  • Ability to mark one's own projects as read-only to avoid changing it by accident.
    3473
    Story
    6
    New
    1
    72
    -c-a
    36
  • [SDKs] Python SDK supports Django model/manager style usage
    2028
    Story
    6
    Rejected
    6
    2.0
    2.0
    72
    -c-a
    36
  • Machine-readable API schema that indicates which fields of each object type permit updating by regular (non-admin) users who have can_write or can_manage permission.
    3528
    Feature
    2
    New
    1
    72
    -c-a
    36
  • [Keep] Keep performance testing
    2656
    Feature
    2
    New
    1
    72
    -c-a
    36
  • If a pipeline/job is in a project, it would be nice if the breadcrumbs reflected this for easy maneuvering back and forth
    3402
    Feature
    2
    New
    1
    72
    -c-a
    36
  • [Workbench] Can't edit runtime_constraints in the 'components' tab of pipelines
    3094
    Bug
    1
    New
    1
    72
    -c-a
    36
  • [Crunch] Pipeline can use other pipelines templates as components
    3093
    Story
    6
    New
    1
    72
    -c-a
    36
  • Move permission links to their own table in API server.
    3519
    Story
    6
    New
    1
    72
    -c-a
    36
  • [API] If enabled by user via "preferences" checkbox in Workbench, notification service sends email to owner when a pipeline instance finishes or fails.
    2679
    Story
    6
    New
    1
    2.0
    2.0
    72
    -c-a
    36
  • Counting the number your pipelines were used by unique users
    3498
    Feature
    2
    New
    1
    72
    -c-a
    36
  • [API] Client can request signed locators for specific blobs from API server
    3162
    Feature
    2
    New
    1
    72
    -c-a
    36
  • No workbench user interface for sharing collections
    3434
    Bug
    1
    New
    1
    72
    -c-a
    36
  • [Workbench] Add checkboxes to multi-type chooser modal to filter by object type
    3304
    Story
    6
    New
    1
    2.0
    2.0
    72
    -c-a
    36
  • [Crunch] When a job fails in a pipeline instance, should the other queued/running jobs get cancelled automatically?
    3180
    Story
    6
    New
    1
    72
    -c-a
    36
  • Write network and disk IO performance stats to Keep/KeepProxy logs
    3146
    Feature
    2
    New
    1
    72
    -c-a
    36
  • design document for websockets/event bus
    3231
    Feature
    2
    New
    1
    72
    -c-a
    36
  • [Workbench] Code pops up for a second using web uploader
    4809
    Bug
    1
    New
    1
    72
    -c-a
    36
  • [Tests] Keep load test
    2580
    Feature
    2
    New
    1
    2.0
    2.0
    72
    -c-a
    36
  • [Workbench] Large downloads through workbench fail
    5426
    Bug
    1
    In Progress
    2
    0.5
    0.5
    72
    -c-a
    36
Crunch v2
2015-12-02
2016-03-30
  • [Crunch2] Propagate error messages if sbatch command succeeds but crunch-run can't run (or can't log to the Arvados API)
    10729
    Bug
    1
    New
    1
    11
    -c-a
    36
  • [CWL] Tries to run docker inside container where docker is not available, gives IOError
    10696
    Bug
    1
    New
    1
    11
    -c-a
    36
  • [Workbench] Better presentation of container request "mounts"
    10645
    Story
    6
    New
    1
    1.0
    1.0
    11
    -c-a
    36
  • [Crunch2] Gather and record cloud/physical node information for each container
    10218
    Feature
    2
    New
    1
    11
    -c-a
    36
  • [Workbench] [UNC] Copying collections also copies metadata
    10123
    Feature
    2
    New
    1
    11
    -c-a
    36
  • [Crunch2][Workbench]workflow#show page (similar to pipeline_template#show page)
    10112
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] [API] Permit container [request] with empty command (run default docker command)
    9969
    Bug
    1
    In Progress
    2
    11
    -c-a
    36
  • [Crunch2] [API] Support container request expiry (expires_at)
    9968
    Feature
    2
    New
    1
    11
    -c-a
    36
  • [Crunch2] Support stdin redirection
    8465
    Feature
    2
    New
    1
    11
    -c-a
    36
  • [Crunch2] [API] Add ephemeral "run token" for running containers
    9900
    Bug
    1
    New
    1
    11
    -c-a
    36
  • [Crunch2][Workbench] Add a /all_workflows page that lists pipeline_templates and workflows.
    9839
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] CWL workflow failed with Crunch2, but passed with Crunch1
    9703
    Bug
    1
    New
    1
    11
    -c-a
    36
  • [Crunch2] [API] Reject ContainerRequests with ram exceeding configured maximum
    9622
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] [API] Reject ContainerRequests with vcpus exceeding configured maximum
    9621
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] SLURM dispatcher ignores Containers it can't dispatch
    9616
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] [Workbench] Browse and show tools using the GA4GH tool registry API
    9044
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] [API] API server implements tool registry API
    9042
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] [API] Workflow submission API
    9086
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] Running CWL issues a container request to download and register required Docker images
    9046
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] git tree mount points
    8311
    Feature
    2
    New
    1
    11
    -c-a
    36
  • [Crunch2] [API] Supports a tool registry submission API
    9048
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] [API] Default ram value to fill in for ContainerRequests
    9620
    Story
    6
    New
    1
    11
    -c-a
    36
  • [Crunch2] [API] Default vcpus value to fill in for ContainerRequests
    9619
    Story
    6
    New
    1