198
2018-07-18 Sprint
 
2018-07-18
2018-07-03
  • Big manifest produces NoMemoryError on API server
    13803
    Arvados
    36
    Bug
    1
    In Progress
    2
    198
    -c-a
    36
  • Organize manual install docs into sections
    13799
    Arvados
    36
    Story
    6
    In Progress
    2
    198
    -c-a
    36
  • Update sprockets
    13780
    Arvados
    36
    Bug
    1
    Resolved
    3
    198
    -c-a
    36
  • ReserveExtraRam missing from c-d-s install docs
    13767
    Arvados
    36
    Bug
    1
    Resolved
    3
    198
    -c-a
    36
  • [API] bug in libyaml / Pysch used by API server to parse yaml
    13766
    Arvados
    36
    Bug
    1
    In Progress
    2
    198
    -c-a
    36
  • [API] Initial "arvados-controller" server that proxies API endpoints to Rails server
    13497
    Arvados
    36
    Story
    6
    In Progress
    2
    0.5
    0.5
    198
    -c-a
    36
  • GA4GH WES action items from Toronto
    13573
    Arvados
    36
    Feature
    2
    In Progress
    2
    1.0
    1.0
    198
    -c-a
    36
  • Clean up container input collection naming and properties
    13330
    Arvados
    36
    Bug
    1
    Resolved
    3
    198
    -c-a
    36
  • Federated record retrieval
    13493
    Arvados
    36
    Feature
    2
    In Progress
    2
    1.0
    1.0
    198
    -c-a
    36
  • [arvados-cwl-runner] Improve error message when environment variables missing
    13692
    Arvados
    36
    Bug
    1
    Resolved
    3
    198
    -c-a
    36
  • [Documentation] add how much extra overhead is added for RAM requirement when spinning up a compute node
    13570
    Arvados
    36
    Bug
    1
    New
    1
    198
    -c-a
    36
  • [Composer] Document install & use of Composer
    13690
    Arvados
    36
    Bug
    1
    In Progress
    2
    1.0
    1.0
    198
    -c-a
    36
  • [CWL] Cannot set submit-runner-ram when running from Workbench
    13681
    Arvados
    36
    Bug
    1
    Resolved
    3
    1.0
    1.0
    198
    13
    -c-a
    36
  • [VERSION] add a human readable version as Default
    13668
    Arvados
    36
    Bug
    1
    Resolved
    3
    1.0
    1.0
    198
    -c-a
    36
  • Design new nodemanager config data organization for cluster-wide config
    13731
    Arvados
    36
    Story
    6
    New
    1
    0.5
    0.5
    198
    -c-a
    36
  • [Keep-web] Add metrics endpoint
    13198
    Arvados
    36
    Story
    6
    New
    1
    3.0
    3.0
    198
    -c-a
    36
  • [R SDK] Copying files using the R SDK results in 0 byte files
    13609
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    198
    -c-a
    36
  • [arvados-cwl-runner] [arv-keepdocker] Use subprocess32 instead of subprocess
    13501
    Arvados
    36
    Story
    6
    Resolved
    3
    0.5
    0.5
    198
    -c-a
    36
  • crunchstat-summary --container-request does not report on keep i/o
    12690
    Arvados
    36
    Bug
    1
    In Progress
    2
    198
    -c-a
    36
  • [crunch2] crunchstat-summary doesn't report elapsed time for crunch2 jobs
    12748
    Arvados
    36
    Bug
    1
    In Progress
    2
    198
    -c-a
    36
174
To Be Groomed
 
2021-01-01
2019-12-31
A fake sprint to hold stories to be groomed
  • [CLI] arv traceback on simple timeout
    13813
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Node manager] Cancel shutdowns when there is a wishlist for same size nodes
    13804
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • Build Docker images without requiring Docker on client
    13794
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Document strategies on how to use existing resources to save user preferences
    13792
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Document existing metrics endpoints for Keep store server and Node manager
    13791
    Arvados
    36
    Bug
    1
    New
    1
    1.0
    1.0
    174
    -c-a
    36
  • Add metrics endpoint to API server
    13790
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [API] Retrieve previous versions of collection objects
    13561
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • Support collection versions
    13109
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [Workbench] Search users by email address and shell account
    13384
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Provide more information to SLURM to make scheduling decisions on HPC
    13760
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [CWL] Developer docs for arvados-cwl-runner
    13716
    Arvados
    36
    Support
    3
    New
    1
    174
    -c-a
    36
  • Ability to merge a local account into a remote (federated) account
    13651
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [STORAGE-CLASES] Report the storage classes used by a pipeline
    13644
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Controller] Federated listing API
    13619
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [Documentation] Higher Level Python SDK Reference Page
    6865
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • Python SDK must have docstrings for all public interfaces
    13418
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Python SDK] Retry on HTTP 5xx errors
    12684
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [keepproxy] document limiting maximum number of HTTP connections
    13522
    Arvados
    36
    Story
    6
    New
    1
    0.5
    0.5
    174
    -c-a
    36
  • [arv-mount] avoid excessive memory consumption of idle arv-mounts
    13607
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [API] Sequence of "create group" requests runs slowly, and can crash API server
    13593
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [cwl] a-c-r should log useful information on failure even with --quiet
    13565
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • No timeout is specified in A.C.R or as a default in the python sdk
    13542
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Workbench] View/copy/expunge previous versions of a collection
    13494
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Fix postgres search for filenames
    13508
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Document API in API discovery document
    13390
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [Workbench] Self serve account merge
    12703
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [Epic] Easy cluster install
    13389
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [Epic] Zero-downtime upgrade
    13388
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [API] Add "authorizations" table
    13368
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • --ignore-docker-for-reuse not passed to crunch v2 jobs started via --submit --no-wait
    12666
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Support browsing of projects shared with me in WebDAV
    13218
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • As a data provider, I would like the ability to provide metered access to my data on Arvados, including start/end dates, bandwidth caps, and % of file accessed
    13326
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • As a CWL learner, I would like to be able to run CWL workflows easily on cloud.curoverse.com
    13325
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [keep-web] read/write support for /by_id and /users
    13272
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • Support Bitbucket git repo access from Composer
    12961
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • arvados-cwl-runner supports Python 3
    13306
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [WebDAV] Cleanup writable WebDAV loose ends
    13110
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [keepstore] Limit entire process to configured amount or % of system memory (replace -max-buffers=X)
    9653
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [API] get rid of warning: Called 'load' without the safe option
    13188
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [SDKs] Remove arvadosclient and keepclient libraries
    13162
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [SDKs] Wean all components off old arvadosclient and keepclient libraries
    13144
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • containers are not reused unless runtime constraints (including RAM) match exactly
    13102
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • Fix misleading crunch file upload messages
    13094
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [SDK] Reduce collection class memory footprint
    13062
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [Crunch2] All stdout gets the same timestamp and other logging problems
    13005
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Workbench] Ensure that running processes are visible on the dashboard
    11625
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Workbench] page with a view of all the top level container requests
    12517
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [Federation] Workbench login chooser
    12958
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [keep] Investigate using signed URLs to delegate access to cloud buckets
    13126
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [crunchstat-summary] broken option for skip child jobs?
    12854
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Node Manager] Behave smarter in environments where scratch space can be arbitrarily sized, like GCP and AWS
    12794
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [API] fix race between arrival of trash time and next sweep
    12791
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [API] fix SafeYAML warning
    12762
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • install docs for keepproxy are out of date
    12696
    Arvados
    36
    Support
    3
    New
    1
    174
    -c-a
    36
  • [keep-web] Accept /t=token/c=collection/path (currently only /c=collection/t=token/path)
    12692
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • arv-mount by_tag directory support for properties
    12571
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Status endpoint aggregator
    12288
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Activating an account (setting is_active from false to true) does not email the new user
    12178
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • Standard convention for Nagios-compatible health check scripts kept alongside source for services
    11748
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Pull Docker images without requiring Docker on client
    11724
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [Deployment] Use consul to report health of services/components
    11183
    Arvados
    36
    Feature
    2
    In Progress
    2
    174
    -c-a
    36
  • Notification of job completion
    10798
    Arvados
    36
    Story
    6
    Duplicate
    7
    174
    -c-a
    36
  • [API] [arvados-ws] remove all websockets and puma related code from the api server codebase
    10767
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • Integrate CI::Reporter to provide Ruby test output in JUnit XML format
    10525
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [API?/Workbench] Search for a link tag value returns linked objects
    9425
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Copying a project with a docker image doesn't copy the docker metadata
    12198
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [SDKs] Use sphinx to render for Python SDK docs
    5214
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
71
Arvados Future Sprints
 
2020-01-02
2020-01-01
A pseudo-version to collect tickets from multiple projects
  • Document web socket server API (v0)
    13789
    Arvados
    36
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • "Will fail" status for failing (but not yet failed) containers
    13773
    Arvados
    36
    Feature
    2
    New
    1
    3.0
    3.0
    71
    -c-a
    36
  • Compute nodes monitor the tmpdir space over time
    12444
    Arvados
    36
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • Nodemanager reads instance sizes from the system config file to avoid duplication
    13611
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [API] If enabled by user via "preferences" checkbox in Workbench, notification service sends email to owner when a pipeline instance finishes or fails.
    2679
    Arvados
    36
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • Review dependencies to make sure that they meet requirements
    13571
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Crunch2] [API] Specify which user's credentials should be used by a container
    10511
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Keep] Support multiple storage classes
    11184
    Arvados
    36
    Feature
    2
    In Progress
    2
    71
    -c-a
    36
  • [Workbench] Support display & reseting of expiration dates for collections
    11740
    Arvados
    36
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [crunch-run] Cancel container on FUSE error
    13403
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [keepstore] Write new blocks to appropriate storage class
    13382
    Arvados
    36
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • Benchmark container_request creation and see if there are opportunities for optimization
    13351
    Arvados
    36
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • [API] Endpoint to get projects shared with me
    13146
    Arvados
    36
    Story
    6
    New
    1
    3.0
    3.0
    71
    -c-a
    36
  • [API] Support multiple load-balanced API server nodes
    13484
    Arvados
    36
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • arvbox warn if running as root or on OS X
    13343
    Arvados
    36
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • keepstore -help entry for -dump-config is unclear
    13322
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Refactor crunch2 logging
    13048
    Arvados
    36
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • Support SLURM parameter passthrough from CWL jobs
    12191
    Arvados
    36
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • is_a filter doesn't work with remote objects
    13006
    Arvados
    36
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [CWL] arvados-cwl-runner should support tagging output collection using properties
    11942
    Arvados
    36
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • crunch-dispatch-slurm uses a surprising number of file descriptors, and stops dispatching when it gets a "too many open files" error
    13142
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Strict checks for "@@" filter operand
    12251
    Arvados
    36
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • Investigate packrat to lock down R package dependencies
    13096
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • R SDK submit to Bioconductor
    13077
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • Provide configuration knob to disallow external access through keep-proxy
    13046
    Arvados
    36
    Story
    6
    In Progress
    2
    71
    -c-a
    36
  • Can't create user group with the same name as a top level project
    12994
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] Access shared/ is inefficient
    12990
    Arvados
    36
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • [Composer] Production build fails to load
    12880
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • keepstore no longer functioning with repeated errors: http: Accept error: accept tcp [::]:25107: accept4: too many open files; retrying in 1s
    12859
    Arvados
    36
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • [Crunch2] Node record's crunch_worker_state field is not populated
    12834
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Bad dashboard time formatting - 60m == 1h
    12558
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Don't create an index if it exists already. Will break install if we manually added it,
    12510
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [crunchv2] Improve crunch-run environment reporting
    12465
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Associate multiple identity_url from SSO with same user
    12704
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • Collections/data access API
    12090
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • Different help listing for 'arvados-cwl-runner'
    12410
    Arvados
    36
    Bug
    1
    Resolved
    3
    71
    -c-a
    36
  • arv-get should abort on ctrl/C
    11519
    Arvados
    36
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • [Composer] Refactor to separate vendor-specific pieces and all them to be replaced
    12527
    Arvados
    36
    Story
    6
    In Progress
    2
    71
    -c-a
    36
  • Symlink in output points to invalid location -- no such file or directory
    12606
    Arvados
    36
    Bug
    1
    Resolved
    3
    71
    -c-a
    36
  • [Workbench] Description column doesn't contain descriptions
    12077
    Arvados
    36
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [cwl] cwl-tool conditional implementation
    12409
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • Document how to add EBS tmp disk to nodemanager configuration
    12360
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Document requirements for nodemanager token scope
    12358
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [nodemanager] Only looking at first 100 queued jobs
    12295
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] Does not distinguish between keep references to File and Directory when selected in Workbench template
    12331
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Migrate to Slurm API
    12289
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • Allow templating of the collection sharing web page
    12239
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • Deprecate / remove arv-web
    11794
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Update Pipeline Optimization wiki with CWL/Crunchv2
    11285
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • crunch-run handling non-group readable files in output directory
    12170
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • mandatory keep_web configuration missing from workbench install instructions
    12113
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Javascript SDK
    12089
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Improve wording of Keep error messages in Python SDK
    12082
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [node manager] failing test
    12058
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • lost job log
    12051
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Be able to create a new collection based on a subdirectory in workbench
    12028
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [crunchstat-summary] gives invalid min_cores recommendation
    12026
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Find arvados-cwl-runner version easier in a container request
    12009
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • On the collections page indicate expiring collections
    11983
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • Error fetching collection (HttpError 422) during call to arvados.util.listdir_recursive
    11917
    Arvados
    36
    Bug
    1
    Resolved
    3
    71
    -c-a
    36
  • [FUSE] high memory consumption (possible leak) in long-running arv-mount
    10584
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Update job stats to be more useful to end user
    10679
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Remove async permissions code
    11705
    Arvados
    36
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • User accounts optionally have read-only access
    11875
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Add a "Browse" tab that links to tree/master in repository#Show page
    11871
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Go] CLI programs should exit 0 after giving -help
    11863
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] incorrect text about log messages on empty collection
    11844
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Python SDK] Implement support for universal newline mode in Collections API
    11770
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • Support schema.org/Google structured markup for datasets
    11745
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] The sort order of items on /pipeline_instances and /container_requests page is incorrect
    11716
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • CWL Expression Tool Javascript issue when using str.includes
    11692
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Using cwl, when you obtain files (file objects) from a directory listing they lose some fields when compare to files listed in cwl doc
    11691
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Provenance graph consolidates scatter steps
    11680
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Logs containers with undefined exit code
    11679
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch2] crunch-dispatch-slurm hits scancel too much
    11669
    Arvados
    36
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • [SDKs] Exceptions raised by Python SDK should include the "error token" if provided in the API response
    11668
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] publish python3-arvados-python-client packages
    11657
    Arvados
    36
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Replace schizophrenic generic "groups" page with "roles" page that only creates/lists groups with group_class="role".
    5076
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [node manager] not assigning weights
    11627
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Example CWL code for cwl-runner doesn't work
    11621
    Arvados
    36
    Bug
    1
    Resolved
    3
    71
    -c-a
    36
  • [Workbench] A cancelled container request page should show the "Re-run" button
    11609
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • arv-put detects symlinks to common files and directories to avoid duplicated uploads
    11605
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [API] [Workbench] config option serve_static_assets to serve_static_files
    11593
    Arvados
    36
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • a-c-r should log the command used to run the pipeline
    11581
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Delete old job/container logs in main server process, instead of rake tasks invoked from cron jobs
    11582
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [CWL] Allow "keep:" references on command line.
    11584
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Limit number of lock/unlock cycles for a given container
    11561
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Improve user page group memberships management [to be groomed]
    9441
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [CWL] [Workbench] Support for copying/moving pipelines
    11515
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • occasional API server badness: 'incomplete response received from application'
    11556
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch2] Create workflow object for CWL runs which are initiated from the command line
    11741
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] Integration test using real programs with complex write patterns.
    11558
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Webhook callbacks for server-to-server communication
    11555
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [FUSE] Writable fuse creating conflicts with itself
    11553
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • workbench needs to handle API server timeouts better
    11548
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Excessive memory and time consumed by API and dispatch when container fields (like "mounts") are large
    11547
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] clean up stale/conflicting dns data from deleted node records
    11531
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Implement disk usage reporting for the administrator
    11524
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • User activity page takes too long to load
    11523
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • "arv collection list" command parsing allows invalid lines
    11520
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • HTTP 503 status for planned downtime
    11508
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • bcbio NA12878 validation runs: job re-use failure with non-existant collection
    11495
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • bcbio NA12878 validation runs: failed steps due to being unable to setup container
    11494
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Support rendering of CWL description fields with embedded markup
    11452
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDK] avoid interfering with socket open/close - use pycurl sockoptfunction instead of opensocketfunction
    11460
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDK] Resolve symbolic names to uuid/pdh (cwl + other tools)
    11442
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] UUIDs & PDHs should be hyperlinked
    11421
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] support text-mode open() in Python 3
    11419
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDK] tool for copying CWL file + input collections
    11410
    Arvados
    36
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [arv-put] Lumpy / slow upload
    11405
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Network saturation
    11396
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] [UNC] Copying collections also copies metadata
    10123
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [arv-put] bad progress indicator
    11296
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] Fails with $schemas referencing remote resources.
    11257
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] full text search on pipeline_instances table is extremely slow (wrong index?)
    11261
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] "arv group contents" produces a 404 error (seems to POST instead of GET?)
    11260
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Tests] Make workbench integration tests finish faster (at least in Jenkins)
    11251
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • job_task creation fails with ApiError - HttpError 422 - ActiveRecord::StatementInvalid: PG::InternalError: ERROR: invalid memory alloc request size 1718630765
    11238
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Docker load time on compute node is too long
    11222
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Nodemanager] Packaging for compute node setup scripts
    11171
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [GA4GH] Participate in DREAM workflow interoperability activities
    11163
    Arvados
    36
    Story
    6
    In Progress
    2
    71
    -c-a
    36
  • [GA4GH] Support task execution API using crunch v2 containers
    11161
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [GA4GH] Expose workflow records via tool registry API
    11160
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [GA4GH] Import from tool registry API
    11159
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [arv-put] When debug mode is active, report the cache file name being to be used
    11157
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] Document keepstore S3 volume configuration
    11155
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] Migrate install docs from command line flags to YAML configs (keepproxy, keep-web)
    11154
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] create_token script should allow operator to provide token scopes and opaque comment
    11153
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Crunch2] Propagate dispatch error messages (e.g., sbatch fails) to user via logs/websocket
    11148
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Write scalability test which can be used periodically as needed
    11147
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Crunch2] [Workbench] Show slurm queue position of containers submitted to slurm but not yet running
    11146
    Arvados
    36
    Feature
    2
    New
    1
    3.0
    3.0
    71
    -c-a
    36
  • apt-get upgrade arvados-api-server on Ubuntu 12.04 did not update crunch-job
    11137
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • "arv keep_service create" should go to an editor.
    11093
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Trying to copy a pipeline template to 9tee4 fails
    11075
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • "Run a example test" Button.
    11026
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] [Python] When reading data through Collection et al., signatures should refresh automatically when needed
    10008
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Document how to choose a suitable blob signature TTL
    11016
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [WB] 'Used by' tab empty when no graph is available
    11013
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [keep-web] configurable block cache size
    10998
    Arvados
    36
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [CWL] Avoid using "+" char in mount paths
    10978
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • arvados-cli gem dependency error
    10955
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Live stats should use consistent coloring for graphs
    10948
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Switch from goamz to aws-sdk-go
    10477
    Arvados
    36
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Crunch2] [API] return a more specific 422 error message when a client calls containers#unlock without having the lock
    10705
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] [SDKs] Mention in API docs and discovery doc that destroy=delete and index=list
    10946
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Spike] virtualenv arvados-cwl-runner
    10904
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Documentation] we should not use github.com copy of arvados in the tutorial
    10898
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [cwl] arvados-cwl-runner submitted job fails due to missing dependency futures>=3.0.5 in docker/jobs image
    10881
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch2] [Crunch1] Disable crunch1 APIs by default on new installs
    10865
    Arvados
    36
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] [SDKs] When client and server versions differ, the server must either implement the API the client expects, or return an error.
    10849
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Support array type input parameters to Workflows
    10830
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Don't create manifest with 0 length chunk
    10809
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [keepstore] Refactor volume Get/Put funcs to BlockReader/BlockWriter interfaces
    10794
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch2] Propagate error messages if sbatch command succeeds but crunch-run can't run (or can't log to the Arvados API)
    10729
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [arvbox] [arvados-ws] Make arvbox use the new arvados-ws
    10763
    Arvados
    36
    Feature
    2
    Resolved
    3
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] pipeline_instance#show page should offer “Copy to project” and “Move pipeline instance” options like most other show pages
    10756
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • add a --user-script option to install-arvados-jobs-image
    10718
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] Missing docker_image link classes from API docs
    10721
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] "Public pipelines" on help menu links to wiki, not local public pipelines
    10715
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Deprecate arv-run
    10717
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Crunch2] crunch-run fails trying to set swappiness on ubuntu 1204 kernel
    10708
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Crunch1 jobs should still work on a slurm setup configured for Crunch2
    10689
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Doesn't kill itself when unhandled exceptions are raised during actor setup
    8871
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Python SDK] Document undocumented methods in RichCollectionBase
    10650
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • Unable to build arvados-cwl-runner in 9tee4 environment
    10643
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] a-c-r maximum recursion depth exceeded error
    10614
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • apps/workbench_functionals test failing
    10573
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • services/nodemanager test_time_timout failing
    10571
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [crunchstat-summary] should not report 0% CPU and 0 RAM in cases where stats were not reported at all
    10570
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • arvbox destroy fails because some files are owned by root
    10566
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • sometimes `arvbox reboot test` gets stuck asking for a sudo password
    10561
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Collection file count & size information don't get dynamically updated on collection update
    10554
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • arvados-git-httpd returns error '500' (Internal Server Error) when a request is not authorized
    10552
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • arvbox loops forever when something goes wrong
    10545
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • implement approximate (estimated) counts for API list method
    10543
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Add support for Trash Bin
    10537
    Arvados
    36
    Story
    6
    Duplicate
    7
    71
    -c-a
    36
  • [Keep] Share buffers between overlapping/consecutive GET requests for the same block
    10541
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • test suite hangs (in arvbox) in sdk/python test_callback
    10535
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Multiple links with the same relevant information can be created
    10532
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [crunchstat-summary] HTML plots should be a superset of text format output
    10531
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [crunch-run] use docker instead of docker.io
    10514
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Python SDK] Provide more control over pre-fetch behavior
    10493
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • Multiple virtual machines with the same hostname can be created
    10469
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Document crunchstat-summary
    10458
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Fix memory leak in Python SDK Collection class
    10445
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Performance][Workbench] While in a resource #show page, switching between tabs results in fetching the object again from API server. This can cause unacceptable amount of latency for large objects such as large pipeline instances and also to collections.
    10444
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • 4xphq keep balance api request causes oom on api server
    10408
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Node manager should fetch pricing information from cloud APIs
    10403
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [API] Remove unimplemented fields from api_client_authorization
    10405
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [CWL] Reduce redundant work with subworkflow RunInSingleContainer
    10402
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • crunchstat-summary should explain why "(no report generated)" when possible
    10390
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Request collections that don't (yet) exist via fuse interface
    10388
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • Faster downloading using arv-get
    10387
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • In the arvados sso database, multiple identical clients can be created
    10386
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Add varchar_pattern_ops to all relevant PostgreSQL UUID indexes
    10354
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • Get list of Arvados configuration parameters in puppet that could be published by Consul
    10358
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Enable refresh for "small" pipelines
    10355
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Import CWL workflow
    10344
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • remove the need of yum reinstall from the installation/upgrade of Rails based components
    10337
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • arvados-cwl-runner fails to find secondaryFiles
    10327
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Don't assume Switchyard config for SSH explanation
    10320
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] list of logins in the admin page isn't showing all logins
    10319
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] a-c-r option to resubmit failed jobs
    10328
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Crunch2] crunch-run config option to use arv-mount for output dir
    10313
    Arvados
    36
    Feature
    2
    Resolved
    3
    71
    -c-a
    36
  • [Workbench] add a configuration flag to hide compute nodes
    10309
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • Output glob "./" doesn't work as output from CWL workflow
    10308
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch2] [API] Accept collection UUID or PDH as container_image in a container request
    10298
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Centos7] [google_api_python_client] packaging with wrong permissions
    10296
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] [Workbench] Error out when unrecognized keys appear in config files
    10594
    Arvados
    36
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Go programs] Error out when unrecognized keys appear in config files
    10282
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Pipeline instance shows wrong button labels in tab area
    10265
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] Tries to run docker inside container where docker is not available, gives IOError
    10696
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDK] Convenience method for resolving project/file paths
    10268
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Performance][Workbench] Computing user notifications in topnav is expensive. Can the user's properties be used instead?
    10245
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Performance] Fetching the pipeline instance qr1hi-d1hrv-jl9fvzy3x8sdj8v seems to take too long
    10242
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Crunch1] Log the node properties at the start of a job
    10217
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • Efficient queries for notification menu items
    10213
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [CWL] arvados-cwl-runner may not be handling input files on keep mount correctly
    10206
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Arvados should be able to cat/zcat files in collections easily
    10191
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Node Manager] Support ephemeral additional storage for Azure node types that do not have sufficient instance storage
    10183
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • Provide more reasonable error messages for memory issues during container dispatch
    10182
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Crunch job output logging improvement stories
    10181
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • Confusing job duration reporting
    10177
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SSO] sso server adds multiple records without checking
    10167
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Jobs on dashboard say "No output" even when they have output
    10170
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Additional Crunch job logging controls
    10164
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • Automate starting/enabling services during Workbench and API package installation
    9960
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Packaging] Include sample config file (/etc/arvados/foo/foo.example.yml) with each configurable package
    10141
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [API] In each request log entry, report time spent getting current permission graph
    10127
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] crunch-dispatch log throttling should not apply to its own stderr
    10120
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Python RichCollectionbase's find_or_create() method callers may assume that found object is of "create_type" type
    10097
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • RichCollectionBase's _get_src_target method would crash if "source" argument is not basestring and "target_path" is empty.
    10096
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • keep-balance reporting large numbers of replicas lost
    10084
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • queued jobs in Paused pipeline instances start running anyway
    10083
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • pipeline_instance state can be changed from `Complete` to `Paused`
    10080
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] ContainerRequest#show crashes "undefined method `each' for nil:NilClass"
    10040
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Move Container related documentation from wiki to code
    10027
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Double-clicking "show version" link causes modal deadlock
    10018
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Retrieve all log content directly from API instead of pre-rendering in Rails
    10007
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Python SDK should use a more recent version of the google api client library
    9989
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Testing] TestErrorDuringRsync_FakeDstKeepservers
    9985
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Testing] test_shutdown_declined_when_idle_and_job_queued flaky
    9984
    Arvados
    36
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Crunch2] [API] Permit container [request] with empty command (run default docker command)
    9969
    Arvados
    36
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • [Crunch2] [API] Support container request expiry (expires_at)
    9968
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [CWL][Crunch][Crunch2] crunchrunner should ignore hidden directories when uploading to keep
    9965
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL][Crunch2][Crunch] crunchrunner should use CWL globs to output data to keep
    9964
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] arv-mount installation documentation not working
    9870
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] performance issues stat() in python
    9732
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] Undelete collections by moving them out of the TrashDirectory
    9591
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [keep-balance] Refuse to act when planning to delete data above an admin-specified threshold
    8179
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [keep-balance] Do not delete blocks referenced by collections with replication_desired=0
    9967
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • login-sync config file & systemd unit
    9958
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • nodemanager systemd unit
    9959
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDK] Package Python apps as virtualenvs
    9945
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] file upload should provide progress bar for overall upload, not just individual files
    9937
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • Workbench file upload should allow the selection of directories
    9936
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDK] portable_manifest_text() normalizes manifest, breaks CollectionReader() round trip
    9929
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Python SDK duplicates resource attributes in top level of params
    9921
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] arv-put's default output includes both collection UUID and PDH
    8415
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] Improve metadata created by arv-put
    3311
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench UI] Pipeline instances should have a link to view the CWL file used.
    9802
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [CWL] Creating intermediate folders in working directory (fails in cwl-runner)
    9755
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] UI should advance to new step when user submits their input
    9750
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] Secondary files entering into Arvados automatically
    9747
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Crunch2][Workbench] List both pipeline_templates and workflows on both pages
    9839
    Arvados
    36
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [CWL] cwl-runner parses nested arrays repetively
    9588
    Arvados
    36
    Bug
    1
    Resolved
    3
    71
    -c-a
    36
  • [Workbench] Ability to add group from Groups admin page
    10142
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [keep-rsync] Rename "replications" to "replicas"
    9443
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [keep-balance] "Expedited delete" tool: perform garbage collection on some specific (recently deleted) collections, bypassing usual GC race protections
    9364
    Arvados
    36
    Feature
    2
    New
    1
    3.0
    3.0
    71
    -c-a
    36
  • [CWL] arvados-cwl-runner should reuse the most recent run
    9362
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] Jobs crash when arvados/jobs:latest is not suitable to run CWL jobs
    9659
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch2] crunch-dispatch-slurm can't successfully dispatch work when run from a directory it can't write to
    9630
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch2] Document/fix handling of collections with non-nil expires_at field
    9278
    Arvados
    36
    Story
    6
    In Progress
    2
    1.0
    1.0
    71
    -c-a
    36
  • [Data manager] Verbose reporting
    8912
    Arvados
    36
    Story
    6
    In Progress
    2
    0.5
    0.5
    71
    -c-a
    36
  • [Node Manager] huge virtual memory size
    8798
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Times out before API server loading active pipeline instances
    8504
    Arvados
    36
    Bug
    1
    Feedback
    4
    0.5
    0.5
    71
    -c-a
    36
  • [FUSE] rmdir on CollectionDirectory sets expires_at
    9592
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] Trash directory to list, inspect, and un-trash trashed collections
    9590
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] Don't display expiring collections in regular collection listings
    9584
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] Make .arvados#collection available in collection subdirectories
    9245
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [FUSE] .arvados#collection is missing or outdated after writing inside collection
    9244
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] Add timestamp to arv-mount --logfile option
    8685
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • add key/value support for tags
    8641
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • crunchstat-summary should calculate averages of all metrics
    8573
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Provenance Tracking] jobs refer to collections by uuids, not pdh
    8317
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Add Gantt chart for pipeline optimization
    8254
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • get rid of dependencies python-pyasn1 python-pyasn1-modules
    7977
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] arv-mount is too slow for strelka
    7747
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] Write a Crunch2 wiki page
    7543
    Arvados
    36
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Documentation] Write a Crunch wiki page
    7542
    Arvados
    36
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Node Manager] Aggressively throttles node creation requests when the cloud region is full
    7479
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunchv2] python thread error after job success
    11027
    Arvados
    36
    Bug
    1
    New
    1
    71
    5
    -c-a
    36
  • [NodeManager] CloudNodeListMonitorActor stopped reporting, and logs are not helpful enough to diagnose
    7667
    Arvados
    36
    Bug
    1
    Closed
    5
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] PySDK fails to load CAs for SSL verification when run inside Conda
    8669
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] crunch-job can miss the final log output of a job
    8721
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] When we give up trying to write a block, the next operation on the file should fail
    8148
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Bad URL quoting/parsing in File links from the pipeline template Components tab
    9156
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Python SDK] Add a Collection method to efficiently concatenate files
    9136
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Crunch] Limit maximum wait time between retries
    8774
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Crunch] [UX] Standard excepthook to help debug job problems
    7328
    Arvados
    36
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] arv-copy fails to copy a Docker image specified with repo:tag syntax
    8315
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] The "Log" tab should have an notification that the job has been queued
    8901
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Less logging of tracebacks for routine exceptions
    8894
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Bad compute node address detection on private networks
    8346
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] WebSocketClient Exception 'NoneType' object is not callable
    8388
    Arvados
    36
    Bug
    1
    In Progress
    2
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] Log throttling shouldn't throttle logs from crunchstat, crunch-job
    8552
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] Add --umask, --fmask, --dmask options to control file permissions
    7831
    Arvados
    36
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Bad use of RetryLoop in events.py
    9141
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDK] arvados.arvfile.readall_decompressed() does not return all blocks on a file
    7156
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] Job was repeatedly retried on same bad compute node until abandoned
    8869
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] Many tutorial instructions are wrong outside Curoverse clusters
    8387
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] No user profile should be required in the default configuration
    8830
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Docs] Document Git 1.7.10+ dependency for shell node and HTTPS Git cloning
    8778
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Docs/Workbench] Document how to clone repositories over HTTPS
    8781
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Docs/Workbench] Improve SSH agent documentation
    8775
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Hide file preview buttons when preview isn't possible with current keep-web config
    7743
    Arvados
    36
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [PySDK] API client logs a warning when you create an object without an owner_uuid
    8885
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Node Manager] Broken nodes always get shut down, exempt from all node-counting considerations
    7980
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Node Manager] Shut down nodes in SLURM 'down' state
    8000
    Arvados
    36
    Story
    6
    Resolved
    3
    71
    -c-a
    36
  • [NodeManager] Use sys.exc_clear() to release exception tracebacks
    8541
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Minimum idle time before node is eligible for shutdown
    8551
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Node Manager] qr1hi nodemanager can't start if ulimit is in place
    8686
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Doesn't convert units when determining if a job's scratch request is satisfiable
    8084
    Arvados
    36
    Bug
    1
    Resolved
    3
    0.5
    0.5
    71
    -c-a
    36
  • [API] Go code to connect to the API server database and make basic sense of it
    8565
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Go code to implement the Arvados API permissions model
    8566
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] List queries using "distinct" option return incorrect number of items_available
    8638
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Should not be necessary to host git repos on the same host as API server
    6772
    Arvados
    36
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [FUSE] Listing a project directory is slow when there are many subprojects
    8189
    Arvados
    36
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • [FUSE] arv-mount should detect and log any files/dirs that are still open after unmounting
    8163
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [FUSE] Reset mount-tmp to the state of another collection
    7973
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Update run-command to use arv-mount --mount-tmp instead of staging directory
    7847
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [API] Job model validates that the script exists in the repository at script_version
    7621
    Arvados
    36
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Port arv-keepdocker to use the docker-py library
    9428
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] `arv keep docker` can upload an image already saved as .tar
    9045
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] `arv keep docker` can make links for an image already in a collection
    9147
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Clients can specify which auth config file to load.
    3897
    Arvados
    36
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] PySDK one_task_per_input_file should support a num_retries argument
    7660
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] arv CLI program accepts "-" and "/path/to/file" as values for parameters that expect JSON (most notably the "body" parameter)
    8212
    Arvados
    36
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] arv-copy continue on error
    8314
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDK] arv-copy better Git repository error reporting
    8313
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] arv-mount exits non-zero if any I/O errors were returned
    8363
    Arvados
    36
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Asset pipeline does not work unless config/environments/production.rb is present at buildtime and runtime
    6753
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] CSS+images missing on login_failure.html
    7312
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] crunch-dispatch should run the bundled version of crunch-job specified by Gemfile.lock
    7880
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] [Workbench] config:check catches and reports YAML parsing errors
    8195
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SSO] [API] [Workbench] Have config:check sanity check secrets
    7323
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] [Workbench] Check for nonexistent config params during rake config:check
    7694
    Arvados
    36
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [CRUNCH] Fail gracefully when arvados repo doesn't exists
    8121
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Keep] keepstore status.json should report runtime environment
    7024
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Crashes with Fiddlesticks when trying to view a pipeline instance graph copied from another cluster
    7008
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] [Fiddlesticks] Live job log should show recent history
    5846
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Doesn't explain why a job can't be cancelled
    8399
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Show all known runtime_constraints in job status pane
    8091
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Node Manager] Detect and shut down nodes that fail provisioning in Azure
    8515
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Keep] Keepstore and keepproxy support HTTP Range requests
    3734
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] [FUSE] Python SDK and arv-mount use Range requests when a caller requests part of a block that has been ejected from the cache
    8228
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [API] Job log cleaner should not clean logs when the job's log is the empty collection
    7127
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] Document that arv-copy accepts collection PDHs (ie content addresses) as arguments
    7818
    Arvados
    36
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] Recursive pipeline instance arv-copy doesn't copy job objects, losing metadata
    7001
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] Unhelpful translation of script parameter outside script_parameters
    7600
    Arvados
    36
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SSO] Template calls undefined method after fresh local accounts installation
    6868
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Unhelpful 404 stack trace when trying to arv-copy a collection without access
    7418
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [git] "git clone https://..." with a bogus token should respond 4xx, not 5xx
    6780
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Keep-store] make keep-store lookup token at runtime like keep-proxy does
    7725
    Arvados
    36
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] arv-copy continues copying when a collection's content address is wrong, but warns and exits a special code
    6968
    Arvados
    36
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDK] arv-copy automatically creates new repository(ies) on the destination cluster
    5676
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] Teach arv-copy to copy whole projects
    6840
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] node visibility as admin vs ordinary user does not line up
    7400
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Keep] keepproxy should log real IP address
    7120
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • ubuntu package libarvados-perl should depend on libcrypt-ssleay-perl
    7823
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] Refresh Google OAuth2 setup in SSO install guide
    8330
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Docs] Install guide keepstore runit script has bad syntax
    8348
    Arvados
    36
    Bug
    1
    Resolved
    3
    71
    -c-a
    36
  • [Documentation] RVM and passenger recipes are missing details
    7129
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Deployment] arvados-api-server-upgrade.sh should set up git_repositories_dir
    6883
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [login-sync] Sets up settings.conf
    8344
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Documentation] Various small bugs in the CLI SDK install guide
    7170
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] Various small bugs in the install guide
    7356
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] keep-web runit script depends on sudo configuration
    8349
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] Clarify PostgreSQL setup commands for Software Collections users
    8331
    Arvados
    36
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Docs] Install guide missing Websockets details
    8372
    Arvados
    36
    Bug
    1
    Closed
    5
    0.5
    0.5
    71
    -c-a
    36
  • [Wiki] Clean up Computation_and_Pipeline_Processing page
    8621
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs/Deployment] MUNGE, Nginx, PostgreSQL services don't start on boot on CentOS 6
    8683
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] Install guide incurs RVM's sudo wrath
    7575
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Docs] SSO install guide documents default_link_*
    8329
    Arvados
    36
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Install guide explains a few different deployment options
    7342
    Arvados
    36
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Documentation] FUSE documentation should note granting FUSE permissions
    7230
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Make keepproxy install guide follow nginx conventions
    6919
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Tests] Make slow tests optional (e.g., run-tests.sh --short)
    9017
    Arvados
    36
    Feature
    2
    In Progress
    2
    71
    -c-a
    36
  • [Workbench] Many shell node instructions are wrong outside Curoverse clusters
    8386
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] view log via keep-web test fails in arvbox
    8223
    Arvados
    36
    Bug
    1
    Resolved
    3
    71
    -c-a
    36
  • [API] specifying an invalid filter should result in an error
    7166
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Support numeric filter comparisons for numeric fields
    6992
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Synthetic collections include the "kind" field
    9150
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Deployment] Test distribution packages
    7184
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench/API] Does not derive key name from comments with whitespace
    8538
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] [Maybe] Update API server to support Git 1.7.2
    6922
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Mishandles stop signals
    7026
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] a node filled up its /tmp which killed slurm and docker, node unusable. Node manager did not kill the node.
    6996
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Trying to update a collection by PDH raises a NoMethodError
    9143
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] "order" params should be rejected or used (not silently ignored) even when they reference columns missing from the "select" param
    6240
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Accept collection UUID as a job's docker_image constraint
    7695
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Finalize and document the collections/provenance and collections/used_by API calls
    9148
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Keep] keepstore should notify sysadmin about error conditions (trying harder than just log.Print())
    7232
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Remove ruby dependency from arv wrapper
    4730
    Arvados
    36
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] arv-copy should not require --dst-git-repo when copying on the same cluster
    4431
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] Python Keep block-r/w errors should indicate which collection/file was unreadable/unwritable as a result
    6276
    Arvados
    36
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] arv-put progress meter scales based on file size, rather than being fixed to MiB
    6387
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] arv-copy raises an unexpected backtrace on ^C
    6959
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Out of memory when using arv-copy not handled gracefully
    8065
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Recursive arv-copy should report progress of the entire copy, in addition to individual objects
    8379
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] Refactor arv-get/put/copy into the Python "arv" wrapper using common exception-handling and argument parsing
    5468
    Arvados
    36
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] Ensure `arv keep put` replicates properly
    7476
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Go Keep client enforces a minimum transfer rate for proxy connections
    7477
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] [SDKs] Ensure FUSE and other SDK clients work with a default replication level != 2
    7473
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Fetch all results with the CLI `list` command
    8502
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] arv get (and edit) should support a flag that suppresses display of non-writable attributes like "status" and "writable_by"
    8213
    Arvados
    36
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Add client-side join switches to `arv foo list`
    8501
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] GoSDK arvadosclient parameters are more transparent
    8498
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] PySDK Collection class lets you iterate files and subcollections separately
    8838
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Git credentials helper in CLI tools
    8780
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] CLI tools install tab completion aids
    8022
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] arv-copy copies all metadata associated with an object
    7394
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Can't `arv get` a collection by PDH
    9144
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Pagination sets limit on last page, causing unintended side effects
    7385
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Copying jobs causes "SubmitIdReused" error if submit_id is not null
    6439
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Project listings act like file manager directory trees, with expanding+collapsing trees
    8562
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Remove Keep disks link?
    6920
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Ability to create a new project when creating a new pipeline instance
    8560
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] User admin interface should show which VM(s) the user can login to
    7830
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] workbench move and copy is incomplete
    7002
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] warn user when navigation will cause input text to be lost
    7003
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Pipeline template description display is difficult to read when making a pipeline template instance
    6436
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Visible blanking between partial content reloads
    6363
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Change project "Jobs and pipelines" tab to just "Pipelines"
    8486
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Add an "invert selection" button to checklists alongside "un/select all"
    8221
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [git] Should be able to clone git repositories that are shared with "anonymouspublic" without authentication
    8318
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [FUSE] With --exec, expose the mount point in an environment variable
    7990
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] arv-mount usage message shows incorrect order for [--exec ...] option
    8294
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] crunch-job does not sufficiently sanitize job parameter names when putting them in the environment
    7404
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [crunchstat-summary] jobs with tasks_per_node>1 need node size recommendations adjusted
    8151
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Keepstore] Support a portable data challenge API
    8181
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Keepstore] Don't trash/delete blocks until they appear on multiple trash lists
    8180
    Arvados
    36
    Story
    6
    Rejected
    6
    71
    -c-a
    36
  • [API] Do not accept an empty SSH key as valid
    6601
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Project description styled differently based on whether or not the user can write to the project
    6571
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Keep] multiple response.Writeheader calls
    6991
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] `arv create` creates an object from an empty file
    6921
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Add Gitolite sanity check to install guide
    8058
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Docs] file_names Collection field is undocumented
    8873
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Deployment] .yml.example files should be consistent
    8328
    Arvados
    36
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] Document installing the PySDK at a different PREFIX
    7158
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Documentation] A user with an older install may land in a page that requires the "latest" prerequisites.
    6886
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Displays content at the top of the dashboard, set by the sysadmin
    7468
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Provide an interface for the sysadmin to set Dashboard banner content
    7469
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Provide an interface to delete files from collections
    7470
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Provide a CLI tool to add files to an existing collection
    7471
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Provide a CLI tool to remove files from a collection
    7472
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Advertise anonymous token in discovery document
    7141
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] Crunchstat and arv-mount print final stats before exiting
    7845
    Arvados
    36
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Workbench] Pipeline template listings should include links to the scripts
    7411
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Reusing ArvadosResourceList results in inconsistent results
    7100
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] CLI tools support Mac
    7439
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [GATK Queue] Support a mechanism to redirect stderr for children
    8773
    Arvados
    36
    Story
    6
    Closed
    5
    71
    -c-a
    36
  • [Docker] API server starts before PostgreSQL is ready
    7000
    Arvados
    36
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Docker] Bootstrap font fails to load in Workbench Docker image
    7007
    Arvados
    36
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Docker] Fix SSO configuration in published images
    7006
    Arvados
    36
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Docker] API server uses omniauth.rb for SSO configuration, not application.yml
    7005
    Arvados
    36
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Docker] Workbench image doesn't serve HTTPS
    6998
    Arvados
    36
    Bug
    1
    Closed
    5
    71
    -c-a
    36
  • [Performance] Compare Collection performance benchmarks across components
    6783
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] [Workbench] Generate debconf template from config yaml
    6782
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [FUSE][Performance] Job to md5sum 1TiB of 1MiB files in parallel is very slow
    6762
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • "This website is under heavy load" error causes a parsing error
    6651
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] Add a --replication switch
    7474
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [DRAFT] [Workbench] More encouragement for users to send feedback
    6570
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Keep] keepstore reboots GCE host under heavy load
    6997
    Arvados
    36
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • [Workbench] Provide a GUI interface to arv-copy
    6606
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Whenever `arv` has an invalid resource name argument, it should complain about that
    6599
    Arvad