268
2019-09-25 Sprint
 
2019-09-25
2019-09-11
  • [CWL] some tests failing with "jshint failed to run succesfully"
    15640
    Arvados
    36
    Bug
    1
    New
    1
    268
    -c-a
    36
  • Composer working on arvbox
    15626
    Arvados
    36
    Bug
    1
    Resolved
    3
    268
    -c-a
    36
  • [controller] Implement native Google login (configurable as an alternative to sso-provider)
    15107
    Arvados
    36
    Story
    6
    New
    1
    3.0
    3.0
    268
    -c-a
    36
  • Auto retry individual workbench integration tests
    15615
    Arvados
    36
    Story
    6
    In Progress
    2
    268
    -c-a
    36
  • [keepstore] AWS support IAM roles for authentication
    15599
    Arvados
    36
    Feature
    2
    In Progress
    2
    2.0
    2.0
    268
    -c-a
    36
  • Clarify that Arvados CLI tools are Linux only
    15537
    Arvados
    36
    Bug
    1
    New
    1
    268
    -c-a
    36
  • Cherry-pick 1.4.1 commits onto 1.4-dev branch
    15616
    Arvados
    36
    Story
    6
    In Progress
    2
    268
    26
    -c-a
    36
  • [SDK] Migrate federation to central LoginCluster
    15531
    Arvados
    36
    Feature
    2
    New
    1
    3.0
    3.0
    268
    -c-a
    36
  • [API] Deprecate the @@ list method filter
    15573
    Arvados
    36
    Story
    6
    New
    1
    268
    -c-a
    36
  • [Workbench 2] Update Fileupload component to new error reporting & unit test architecture
    15603
    Arvados Workbench 2
    47
    Story
    6
    New
    1
    3.0
    3.0
    268
    -c-a
    47
  • [Workbench] Hide busy/idle nodes display when crunch1 is not active
    15014
    Arvados
    36
    Bug
    1
    In Progress
    2
    268
    -c-a
    36
  • [Workbench 2] Extend search UI to support vocabulary IDs as well as text
    15069
    Arvados
    36
    Story
    6
    New
    1
    3.0
    3.0
    268
    -c-a
    36
  • Workbench2 trusts federation users
    15530
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    268
    -c-a
    36
  • [Workbench] Use trigram based full text search.
    15429
    Arvados
    36
    Feature
    2
    New
    1
    0.5
    0.5
    268
    -c-a
    36
  • [WB2] Copying a collection with files in subdirectories fails
    15525
    Arvados Workbench 2
    47
    Bug
    1
    Feedback
    4
    268
    -c-a
    47
  • Document how to choose a suitable blob signature TTL
    11016
    Arvados
    36
    Story
    6
    In Progress
    2
    268
    -c-a
    36
  • [keep] keep-balance uses cluster config file
    14714
    Arvados
    36
    Feature
    2
    In Progress
    2
    1.0
    1.0
    268
    -c-a
    36
  • [crunchstat-summary] Add arv-mount FUSE ops time
    14952
    Arvados
    36
    Story
    6
    In Progress
    2
    0.5
    0.5
    268
    22
    -c-a
    36
  • [Workbench 2] Update property editing to use IDs
    15067
    Arvados
    36
    Story
    6
    In Progress
    2
    3.0
    3.0
    268
    -c-a
    36
  • [keepstore] Load cluster configuration file
    13647
    Arvados
    36
    Feature
    2
    In Progress
    2
    2.0
    2.0
    268
    -c-a
    36
251
Workbench2 Q3, Q4
 
2019-12-31
2019-12-04
  • [Data operation] Multi-value properties
    15021
    Arvados Workbench 2
    47
    Support
    3
    New
    1
    251
    -c-a
    47
  • [Workbench] Version/ Debugging info
    14847
    Arvados Workbench 2
    47
    Feature
    2
    New
    1
    251
    -c-a
    47
  • [Workbench] Modal after first log in (Steps for registration)
    13936
    Arvados Workbench 2
    47
    Feature
    2
    In Progress
    2
    3.0
    3.0
    251
    -c-a
    47
  • [Data operations] After adding a description on existing project "show full description" is not visible until is refreshed
    14914
    Arvados Workbench 2
    47
    Bug
    1
    In Progress
    2
    251
    -c-a
    47
  • [Workbench] Admin - Managing user
    14565
    Arvados Workbench 2
    47
    Feature
    2
    In Progress
    2
    3.0
    3.0
    251
    19
    -c-a
    47
  • [Data operations] Filter project tree from projects that a resource cannot be moved to
    14091
    Arvados Workbench 2
    47
    Feature
    2
    In Progress
    2
    251
    -c-a
    47
  • [Data operations] Process status - filter
    15019
    Arvados Workbench 2
    47
    Support
    3
    In Progress
    2
    251
    -c-a
    47
  • [Workbench] Admin - Adding a new user to the group.
    14858
    Arvados Workbench 2
    47
    Feature
    2
    New
    1
    251
    -c-a
    47
  • [Data operations] Adding no-predefined value
    15023
    Arvados Workbench 2
    47
    Bug
    1
    New
    1
    251
    -c-a
    47
  • [Running a Workflow] Advanced Menu of a process is not working
    14782
    Arvados Workbench 2
    47
    Bug
    1
    New
    1
    251
    19
    -c-a
    47
  • Search bar filter shouldn't persist after clicking into a new project
    15010
    Arvados Workbench 2
    47
    Bug
    1
    New
    1
    251
    19
    -c-a
    47
  • [Admin functionality] Admin cannot see another user's content inside the trash
    15347
    Arvados Workbench 2
    47
    Bug
    1
    New
    1
    251
    -c-a
    47
  • [Running a workflow] Pre-defined collections do not show up in the list and cannot be deselected
    14904
    Arvados Workbench 2
    47
    Bug
    1
    New
    1
    251
    -c-a
    47
  • [Data operations] "Open in new tab" is downloading on c97qk
    15159
    Arvados Workbench 2
    47
    Bug
    1
    New
    1
    251
    -c-a
    47
  • [Navigation] Attempting to navigate to non-existent path not handled
    14990
    Arvados Workbench 2
    47
    Bug
    1
    New
    1
    251
    -c-a
    47
  • [Workbench] Change the content inside the owner column from uuid to Projects and user names
    15238
    Arvados Workbench 2
    47
    Support
    3
    New
    1
    251
    -c-a
    47
  • [Navigation] Exclude child processes
    15047
    Arvados Workbench 2
    47
    Feature
    2
    New
    1
    251
    -c-a
    47
  • [Data operations] Missing info in the sharing page
    14814
    Arvados Workbench 2
    47
    Support
    3
    New
    1
    251
    -c-a
    47
  • [Running a workflow] Inputs inside subprocesses are not displayed.
    15084
    Arvados Workbench 2
    47
    Bug
    1
    New
    1
    251
    -c-a
    47
  • [Data operation] Folders upload
    15197
    Arvados Workbench 2
    47
    Support
    3
    New
    1
    251
    -c-a
    47
  • [Data operations] Removing files during upload
    15256
    Arvados Workbench 2
    47
    Support
    3
    Resolved
    3
    251
    -c-a
    47
  • [Looking for data and advanced search][Multi Site Search] - Show Projects from different Arvados instances in left side tree navigation
    14213
    Arvados Workbench 2
    47
    Feature
    2
    Resolved
    3
    251
    -c-a
    47
  • [Data operations] Modal with inputs inside the collection view presents empty fields.
    14926
    Arvados Workbench 2
    47
    Bug
    1
    Resolved
    3
    251
    -c-a
    47
  • [Custom pluggable viewers] Disable use of default file-viewsers-config.json file
    14612
    Arvados Workbench 2
    47
    Feature
    2
    Resolved
    3
    251
    19
    -c-a
    47
  • [Workbench] Backlog refinement
    15342
    Arvados Workbench 2
    47
    Support
    3
    Closed
    5
    2.0
    2.0
    251
    19
    -c-a
    47
  • [Data operations] Consider different approaches for creating new elements
    15284
    Arvados Workbench 2
    47
    Support
    3
    Closed
    5
    2.0
    2.0
    251
    -c-a
    47
  • [Data operations] Filtering by process status
    14986
    Arvados Workbench 2
    47
    Feature
    2
    Closed
    5
    251
    -c-a
    47
  • [Workbench] Link container UUIDs from details panel
    15260
    Arvados Workbench 2
    47
    Bug
    1
    Closed
    5
    251
    -c-a
    47
  • Add the PDH to the collection view.
    15055
    Arvados Workbench 2
    47
    Feature
    2
    Closed
    5
    251
    -c-a
    47
  • Advanced search hardcoded clusters
    15013
    Arvados Workbench 2
    47
    Bug
    1
    Closed
    5
    251
    -c-a
    47
  • [Config] Config files deployment
    14554
    Arvados Workbench 2
    47
    Feature
    2
    Closed
    5
    251
    19
    -c-a
    47
174
To Be Groomed
 
2021-01-01
2019-12-31
A fake sprint to hold stories to be groomed
  • Revise group permissions to separate them from permissions on managed objects
    15372
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [keep-web] logging doesn't include error messages
    15606
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Workbench2] Improve error handling and reporting
    15581
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [API] "DefaultReplication: 0" should be an error
    15588
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • Staging a large number of files with "loadListing: no_listing" still takes more than 30 mins
    15579
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [API] User ownership reassign
    15577
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [API] [keepstore] Sync config file with keep_services table
    15575
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [Workbench2] Integration testing
    15335
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [Workbench2] Logging
    15336
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [CWL] Register workflow and run from git repo
    15580
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Paginate crunchstat-summary HTML output
    15540
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Outputs of workflow runs get put into a default location other than the user's home project
    15455
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [cwl] Implement (or just document?) safer bash defaults for CommandLineTools
    15406
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • run-test.sh can run offline
    15436
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • mounts->tmp->device_type is unimplemented, should not be documented as if it were
    15441
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [doc] our documentation still refers to outdated config.yml parameters
    15428
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • Synthetic database generator tool
    15382
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [arvados-dispatch-cloud] loopback driver
    15370
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • run-tests.sh can populate/use local package cache directories
    15381
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • ExpressionTool can be explicitly run under a CR
    15339
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Better CWL onboarding
    15364
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [Epic] Workbench2 has reached feature parity with Workbench, so that that latter can be deprecated
    15333
    Arvados
    36
    Story
    6
    New
    1
    174
    22
    -c-a
    36
  • [workbench2] Test run, package building & deploy integration
    15321
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [API] add integration test for new user signup
    15320
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • Compute and store per-file checksums
    15292
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Extend vocabulary support for properties to support strong identifiers and multiple labels
    14151
    Arvados
    36
    Story
    6
    New
    1
    174
    22
    -c-a
    36
  • Port arvados-pam to Python 3
    14964
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [Workbench] No errors reported when file is missing a block
    15183
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • Internal Server Error: https://workbench.xxx/themes/curoverse/images/etc/passwd
    15177
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • Federation diagnostic tools/APIs
    15204
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [cwl] expressions in keep_cache
    15279
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [cwl] a-c-r set TTL on final output collection
    15250
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [cwl] a-c-r supports --js-console
    15249
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [keepstore] Return 5xx (not 4xx) if block is not found due to transient backend device failure
    15118
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Crunch2] Post-run hooks
    15135
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • Invalidate tokens federation-wide on when invalidated on home cluster
    15259
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [Workbench 2] Add support for setting trashIntermediate value on workflows
    15217
    Arvados Workbench 2
    47
    Story
    6
    New
    1
    174
    -c-a
    47
  • Dockerize unit tests
    15206
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [keep-balance] [keepstore] Procedure to halt/reverse/investigate a suspected data loss incident
    15125
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [Crunch2] Can issue container request to pull and import Docker images
    9046
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [SSO] fails to start with Ruby 2.4 (future of the SSO server)
    14967
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [SSO] Upgrade to Rails 5
    14989
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [controller] [all services] Publish entire config including secrets
    15082
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • Update search API to support OR queries across text and vocabulary IDs
    15070
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Migrate existing vocabulary property data to new ID scheme
    15068
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • replace epydoc
    15015
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [documentation] config.yml needs to be documented on doc.arvados.org
    15046
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [arvados-cloud-dispatch] commit 115cbd6482632c47fdcbbbe4abc9543e7e8e30ec breaks API host loading
    15045
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [SDKs] [R] Missing stylesheet in R SDK docs
    15043
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Workbench2] Show the version number in workbench2
    15018
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Epic] Use one cluster configuration file for all components
    13648
    Arvados
    36
    Story
    6
    New
    1
    174
    22
    -c-a
    36
  • [API] API call or script to show why jobs didn't reuse
    15502
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [Workbench2] Linking to collections in input object display, recording uuids of input collections
    14974
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [Epic] Kubernetes support
    14872
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [API] searching for "test" on c97qk takes a long time
    14983
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [CWL] Reduce memory footprint by using webdav to get file/dir listings in collections (instead of Python SDK)
    14923
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [arvados-dispatch-cloud] GCE driver (Google Compute Engine)
    15025
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [SDK] Maintain Arvados SDKs in Bioconda
    14906
    Arvados
    36
    Support
    3
    New
    1
    174
    -c-a
    36
  • [Crunch2] Retain references + permissions to earlier containers when retrying a container request
    14706
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • Send real time container logs to a suitable log distribution system (instead of adding rows to the postgres logs table)
    14284
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • postgresql 10.x compatibility
    14824
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Log stats for the entire node lifecycle
    13921
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Copying a container request should link to the original container request
    13557
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [CWL] Requirement for storage classes of data
    13643
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [crunchstat-summary] Support multiple data series per graph (e.g. TX/RX, user/sys CPU, etc)
    14997
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [arvados-cwl-runner] Inaccessible collection causes long traceback
    14650
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • Workbench/API Authentication issue
    14527
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [keepstore] Do not try to trash blocks that were already trashed in previous sweep
    14488
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [api] send e-mail notification to user when their arvados account is activated
    14457
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [api] after deleting a container object, it is impossible to fix/delete the corresponding container request
    14428
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • CWL v1.1 specifies directory listings are ordered
    14803
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [keepstore] ManagementToken is not documented in the --help output
    14414
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [API] Avoid long-running transactions when sweeping trashed objects
    14405
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [controller] refresh manifest API
    14257
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [API] Reduce privilege exposure via API tokens in multi-cluster workflows
    14200
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [CWL] Resolve symbolic names to collections
    11442
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [Running a workflow] Input presets
    14168
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [CWL] Use streamable flag as a hint to use keep output
    14030
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [crunch-dispatch-slurm] option to set job priority directly instead of using nice values
    14021
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [CWL] arvados-cwl-runner should support tagging container requests using properties
    14018
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [API] Container request can provide existing collection UUID that will accept CR output
    14016
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [Controller] Keep database in tune
    14004
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [Spike] [Controller] Port "update workflow" API to controller
    14001
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [keepstore] Cached block fetch for federation
    13998
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Controller] Port "collection update" API from Rails
    13997
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [Controller] Port "collection update" functional tests from Rails API to controller test suite
    13995
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • crunch-dispatch-slurm does not warn when slurm MaxJobCount reached
    13991
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • crunch-dispatch-slurm / Go SDK Dispatcher not able to "let go" of deleted containers
    13982
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • Make keep-web documentation available on doc.arvados.org
    13981
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • Listing collections by PDH and name can be very slow
    13972
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • Workbench takes new users to inexistant tutorial
    13960
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [API server] Implement request throttling
    13954
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Default keep cache scales with machine size
    13925
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Discovery document inconsistencies
    13916
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • Document strategies on how to use existing resources to save user preferences
    13792
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [CLI] arv traceback on simple timeout
    13813
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Node manager] shutting down nodes when there is a wishlist for same size nodes
    13804
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • Build Docker images without requiring Docker on client
    13794
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [Epic] Replace SLURM for cloud job scheduling/dispatching
    13908
    Arvados
    36
    Story
    6
    New
    1
    174
    22
    -c-a
    36
  • [API] groups#contents response should obey caller-provided order (not sort on type first)
    13763
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [keep-web] (webdav) Support COPY and MOVE between collections
    13956
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Workbench] Search users by email address and shell account
    13384
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Provide more information to SLURM to make scheduling decisions on HPC
    13760
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [CWL] Developer docs for arvados-cwl-runner
    13716
    Arvados
    36
    Support
    3
    New
    1
    174
    -c-a
    36
  • [Composer/Workbench] Import of public git repo to a new Arvados repository
    13675
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [STORAGE-CLASES] Report the storage classes used by a pipeline
    13644
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • crunch-run takes a very long time for CWL steps with large numbers of File inputs - could use a new kind of mounts entry to address this
    13636
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Documentation] Higher Level Python SDK Reference Page
    6865
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • Python SDK must have docstrings for all public interfaces
    13418
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Python SDK] Retry on HTTP 5xx errors
    12684
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [arv-mount] avoid excessive memory consumption of idle arv-mounts
    13607
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [cwl] a-c-r should log useful information on failure even with --quiet
    13565
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • No timeout is specified in A.C.R or as a default in the python sdk
    13542
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Workbench2] View/copy/expunge previous versions of a collection
    13494
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Document API in API discovery document
    13390
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [Workbench] Self serve account merge
    12703
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [Epic] Easy cluster install
    13389
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [Epic] Zero-downtime upgrade
    13388
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [API] Add "authorizations" table
    13368
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • --ignore-docker-for-reuse not passed to crunch v2 jobs started via --submit --no-wait
    12666
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • As a data provider, I would like the ability to provide metered access to my data on Arvados, including start/end dates, bandwidth caps, and % of file accessed
    13326
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • As a CWL learner, I would like to be able to run CWL workflows easily on cloud.curoverse.com
    13325
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Support Bitbucket git repo access from Composer
    12961
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [WebDAV] WebDAV performance enhancements
    13110
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [keepstore] Limit entire process to configured amount or % of system memory (replace -max-buffers=X)
    9653
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [SDKs] Remove arvadosclient and keepclient libraries
    13162
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [SDKs] Wean all components off old arvadosclient and keepclient libraries
    13144
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • containers are not reused unless runtime constraints (including RAM) match exactly
    13102
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • Fix misleading crunch file upload messages
    13094
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • Notify Composer user when file changed
    13074
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [SDK] Reduce collection class memory footprint
    13062
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [Crunch2] All stdout gets the same timestamp and other logging problems
    13005
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Workbench] Ensure that running processes are visible on the dashboard
    11625
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Workbench] page with a view of all the top level container requests
    12517
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [keep] Investigate using signed URLs to delegate access to cloud buckets
    13126
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [crunchstat-summary] broken option for skip child jobs?
    12854
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Node Manager] Behave smarter in environments where scratch space can be arbitrarily sized, like GCP and AWS
    12794
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [API] fix race between arrival of trash time and next sweep
    12791
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • install docs for keepproxy are out of date
    12696
    Arvados
    36
    Support
    3
    New
    1
    174
    -c-a
    36
  • [keep-web] Accept /t=token/c=collection/path (currently only /c=collection/t=token/path)
    12692
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [API] Associate multiple identity_url from SSO with same user
    12704
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Collections/data access API
    12090
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • arv-mount by_tag directory support for properties
    12571
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [Composer] Refactor to separate vendor-specific pieces and all them to be replaced
    12527
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Status endpoint aggregator
    12288
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Activating an account (setting is_active from false to true) does not email the new user
    12178
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [CWL] running expression tool on arvados doesn't return proper output
    14888
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [Python SDK] Implement support for universal newline mode in Collections API
    11770
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Standard convention for Nagios-compatible health check scripts kept alongside source for services
    11748
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Pull Docker images without requiring Docker on client
    11724
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [Deployment] Use consul to report health of services/components
    11183
    Arvados
    36
    Feature
    2
    In Progress
    2
    174
    -c-a
    36
  • [API] [arvados-ws] remove all websockets and puma related code from the api server codebase
    10767
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • Integrate CI::Reporter to provide Ruby test output in JUnit XML format
    10525
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • Document crunchstat-summary
    10458
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • crunchstat-summary should explain why "(no report generated)" when possible
    10390
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Crunch2] [API] Accept collection UUID or PDH as container_image in a container request
    10298
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [API?/Workbench] Search for a link tag value returns linked objects
    9425
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • crunchstat-summary should calculate averages of all metrics
    8573
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
  • [Node Manager] Aggressively throttles node creation requests when the cloud region is full
    7479
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [Python SDK] Add a Collection method to efficiently concatenate files
    9136
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • Copying a project with a docker image doesn't copy the docker metadata
    12198
    Arvados
    36
    Bug
    1
    New
    1
    174
    -c-a
    36
  • [SDKs] Use sphinx to render for Python SDK docs
    5214
    Arvados
    36
    Feature
    2
    New
    1
    174
    -c-a
    36
  • [SDK] Merge Go ArvadosClient and arvados.Client and migrate to arvados.Client
    14467
    Arvados
    36
    Story
    6
    New
    1
    174
    -c-a
    36
71
Arvados Future Sprints
 
2020-01-02
2020-01-01
A pseudo-version to collect tickets from multiple projects
  • [config] Don't erase cluster config values just because their counterparts don't appear in legacy configs
    15642
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench2] Unit testing
    15334
    Arvados
    36
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [CWL] Run from original CWL, not packed
    15535
    Arvados
    36
    Story
    6
    New
    1
    3.0
    3.0
    71
    -c-a
    36
  • [API] Remove the @@ list method filter
    15430
    Arvados
    36
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [WB2] Show correct arvados version/commit
    15571
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [WB2] Notify the user when websockets service is disabled
    15569
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [workbench2] Run workflow inputs issues
    15557
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Switch all Workbench tests from PhantomJS to Selenium/Firefox
    15476
    Arvados
    36
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • Support browsing of projects shared with me in WebDAV
    13218
    Arvados
    36
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [keepstore] error reporting improvements
    15521
    Arvados
    36
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Controller] Delegate new container requests to other clusters based on location of input data
    15457
    Arvados
    36
    Feature
    2
    New
    1
    3.0
    3.0
    71
    -c-a
    36
  • Design new vocabulary file format
    15071
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Keep] expose backend latency stats in the Prometheus metrics
    15317
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [API] If enabled by user via "preferences" checkbox in Workbench, notification service sends email to owner when a workflow finishes, fails, or is failing
    2679
    Arvados
    36
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SSO] Use cluster config
    14811
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [pam] PAM module in Go
    15348
    Arvados
    36
    Story
    6
    New
    1
    3.0
    3.0
    71
    -c-a
    36
  • Deprecate & remove human, specimens and traits tables
    15397
    Arvados
    36
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Epic] Replace and delete sso-provider
    15322
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Epic] Port to Python 3 to prepare for Python 2 sunsetting in December 2019
    14532
    Arvados
    36
    Story
    6
    In Progress
    2
    71
    25
    -c-a
    36
  • [keep-balance] Avoid deleting recently-referenced blocks
    9363
    Arvados
    36
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • Update AngularJS to a supported version
    15176
    Arvados
    36
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • Upgrade jQuery to a supported version
    15175
    Arvados
    36
    Story
    6
    New
    1
    3.0
    3.0
    71
    -c-a
    36
  • [docs] better explain the relationship between API server, controller and nginx in install docs
    15528
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Spike] Evaluate alternatives for Composer functionality in Workbench2
    15105
    Arvados
    36
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [API] Support multiple load-balanced API server nodes
    13484
    Arvados
    36
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • Log crunch-run resource usage statistics
    14996
    Arvados
    36
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • Prevent the API server and database from continuing to serve requests to clients after timeout
    13697
    Arvados
    36
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • run-tests.sh skip python/go env setup, don't print skipped tests
    14944
    Arvados
    36
    Support
    3
    New
    1
    71
    -c-a
    36
  • [Keep-web] Support CORS requests with Authorization headers
    8064
    Arvados
    36
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch2] Azure driver supports attaching extra storage
    14912
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Keep] Support multiple storage classes
    11184
    Arvados
    36
    Feature
    2
    In Progress
    2
    71
    -c-a
    36
  • [Workbench] Child containers run on federated clusters do not show up
    14710
    Arvados
    36
    Bug
    1
    New
    1
    3.0
    3.0
    71
    -c-a
    36
  • [API] Strict checks for "@@" filter operand
    12251
    Arvados
    36
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • Merge Workbench2 repo into Arvados repo
    14659
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [crunch-dispatch-cloud] Run multiple containers on a single VM
    14922
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • Refactor crunch2 logging
    13048
    Arvados
    36
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • Multi-site (federated) object search in controller
    14374
    Arvados
    36
    Story
    6
    New
    1
    3.0
    3.0
    71
    -c-a
    36
  • Nodemanager reads instance sizes from the system config file to avoid duplication
    13611
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [crunch-run] Cancel container on FUSE error
    13403
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • a-n-m spawned a container on the wrong sized node
    14036
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [nodemanager] Be quicker applying fixup for node features
    13961
    Arvados
    36
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • Document web socket server API (v0)
    13789
    Arvados
    36
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • Review dependencies to make sure that they meet requirements
    13571
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Crunch2] [API] Specify which user's credentials should be used by a container
    10511
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Support display & reseting of expiration dates for collections
    11740
    Arvados
    36
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [keepstore] Write new blocks to appropriate storage class
    13382
    Arvados
    36
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • Benchmark container_request creation and see if there are opportunities for optimization
    13351
    Arvados
    36
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • arvbox warn if running as root or on OS X
    13343
    Arvados
    36
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • keepstore -help entry for -dump-config is unclear
    13322
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [keep-web] read/write support for /by_id and /users
    13272
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [keepproxy] document limiting maximum number of HTTP connections
    13522
    Arvados
    36
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • Support SLURM parameter passthrough from CWL jobs
    12191
    Arvados
    36
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [CWL] arvados-cwl-runner should support tagging output collection using properties
    11942
    Arvados
    36
    Story
    6
    In Progress
    2
    1.0
    1.0
    71
    -c-a
    36
  • crunch-dispatch-slurm uses a surprising number of file descriptors, and stops dispatching when it gets a "too many open files" error
    13142
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Investigate packrat to lock down R package dependencies
    13096
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • R SDK submit to Bioconductor
    13077
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • Provide configuration knob to disallow external access through keep-proxy
    13046
    Arvados
    36
    Story
    6
    In Progress
    2
    71
    -c-a
    36
  • Can't create user group with the same name as a top level project
    12994
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] Access shared/ is inefficient
    12990
    Arvados
    36
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • [Composer] Production build fails to load
    12880
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • keepstore no longer functioning with repeated errors: http: Accept error: accept tcp [::]:25107: accept4: too many open files; retrying in 1s
    12859
    Arvados
    36
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • [Crunch2] Node record's crunch_worker_state field is not populated
    12834
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Bad dashboard time formatting - 60m == 1h
    12558
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Don't create an index if it exists already. Will break install if we manually added it,
    12510
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [crunchv2] Improve crunch-run environment reporting
    12465
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • arv-get should abort on ctrl/C
    11519
    Arvados
    36
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • [cwl] cwl-tool conditional implementation
    12409
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • Document how to add EBS tmp disk to nodemanager configuration
    12360
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Document requirements for nodemanager token scope
    12358
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [nodemanager] Only looking at first 100 queued jobs
    12295
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] Does not distinguish between keep references to File and Directory when selected in Workbench template
    12331
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Migrate to Slurm API
    12289
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • Allow templating of the collection sharing web page
    12239
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • Deprecate / remove arv-web
    11794
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Update Pipeline Optimization wiki with CWL/Crunchv2
    11285
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • crunch-run handling non-group readable files in output directory
    12170
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • mandatory keep_web configuration missing from workbench install instructions
    12113
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Javascript SDK
    12089
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Improve wording of Keep error messages in Python SDK
    12082
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [node manager] failing test
    12058
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • lost job log
    12051
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Be able to create a new collection based on a subdirectory in workbench
    12028
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • Find arvados-cwl-runner version easier in a container request
    12009
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • On the collections page indicate expiring collections
    11983
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] high memory consumption (possible leak) in long-running arv-mount
    10584
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Update job stats to be more useful to end user
    10679
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Remove async permissions code
    11705
    Arvados
    36
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • User accounts optionally have read-only access
    11875
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Add a "Browse" tab that links to tree/master in repository#Show page
    11871
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Go] CLI programs should exit 0 after giving -help
    11863
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] incorrect text about log messages on empty collection
    11844
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Support schema.org/Google structured markup for datasets
    11745
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] The sort order of items on /pipeline_instances and /container_requests page is incorrect
    11716
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • CWL Expression Tool Javascript issue when using str.includes
    11692
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Using cwl, when you obtain files (file objects) from a directory listing they lose some fields when compare to files listed in cwl doc
    11691
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Provenance graph consolidates scatter steps
    11680
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Logs containers with undefined exit code
    11679
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch2] crunch-dispatch-slurm hits scancel too much
    11669
    Arvados
    36
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • [SDKs] Exceptions raised by Python SDK should include the "error token" if provided in the API response
    11668
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Replace schizophrenic generic "groups" page with "roles" page that only creates/lists groups with group_class="role".
    5076
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [node manager] not assigning weights
    11627
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] A cancelled container request page should show the "Re-run" button
    11609
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • arv-put detects symlinks to common files and directories to avoid duplicated uploads
    11605
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [API] [Workbench] config option serve_static_assets to serve_static_files
    11593
    Arvados
    36
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • a-c-r should log the command used to run the pipeline
    11581
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Delete old job/container logs in main server process, instead of rake tasks invoked from cron jobs
    11582
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [CWL] Allow "keep:" references on command line.
    11584
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Improve user page group memberships management [to be groomed]
    9441
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [CWL] [Workbench] Support for copying/moving pipelines
    11515
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • occasional API server badness: 'incomplete response received from application'
    11556
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch2] Create workflow object for CWL runs which are initiated from the command line
    11741
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] Integration test using real programs with complex write patterns.
    11558
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Webhook callbacks for server-to-server communication
    11555
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [FUSE] Writable fuse creating conflicts with itself
    11553
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • workbench needs to handle API server timeouts better
    11548
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Excessive memory and time consumed by API and dispatch when container fields (like "mounts") are large
    11547
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] clean up stale/conflicting dns data from deleted node records
    11531
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Implement disk usage reporting for the administrator
    11524
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • User activity page takes too long to load
    11523
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • "arv collection list" command parsing allows invalid lines
    11520
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • HTTP 503 status for planned downtime
    11508
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • bcbio NA12878 validation runs: job re-use failure with non-existant collection
    11495
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • bcbio NA12878 validation runs: failed steps due to being unable to setup container
    11494
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Support rendering of CWL description fields with embedded markup
    11452
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDK] avoid interfering with socket open/close - use pycurl sockoptfunction instead of opensocketfunction
    11460
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] UUIDs & PDHs should be hyperlinked
    11421
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDK] tool for copying CWL file + input collections
    11410
    Arvados
    36
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [arv-put] Lumpy / slow upload
    11405
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Network saturation
    11396
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] [UNC] Copying collections also copies metadata
    10123
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [arv-put] bad progress indicator
    11296
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] Fails with $schemas referencing remote resources.
    11257
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] full text search on pipeline_instances table is extremely slow (wrong index?)
    11261
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] "arv group contents" produces a 404 error (seems to POST instead of GET?)
    11260
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Tests] Make workbench integration tests finish faster (at least in Jenkins)
    11251
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • job_task creation fails with ApiError - HttpError 422 - ActiveRecord::StatementInvalid: PG::InternalError: ERROR: invalid memory alloc request size 1718630765
    11238
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Docker load time on compute node is too long
    11222
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Nodemanager] Packaging for compute node setup scripts
    11171
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [GA4GH] Participate in DREAM workflow interoperability activities
    11163
    Arvados
    36
    Story
    6
    In Progress
    2
    71
    -c-a
    36
  • [GA4GH] Support task execution API using crunch v2 containers
    11161
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [GA4GH] Expose workflow records via tool registry API
    11160
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [GA4GH] Import from tool registry API
    11159
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [arv-put] When debug mode is active, report the cache file name being to be used
    11157
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] Document keepstore S3 volume configuration
    11155
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] Migrate install docs from command line flags to YAML configs (keepproxy, keep-web)
    11154
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] create_token script should allow operator to provide token scopes and opaque comment
    11153
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Crunch2] Propagate dispatch error messages (e.g., sbatch fails) to user via logs/websocket
    11148
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Write scalability test which can be used periodically as needed
    11147
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Crunch2] [Workbench] Show slurm queue position of containers submitted to slurm but not yet running
    11146
    Arvados
    36
    Feature
    2
    New
    1
    3.0
    3.0
    71
    -c-a
    36
  • apt-get upgrade arvados-api-server on Ubuntu 12.04 did not update crunch-job
    11137
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • "arv keep_service create" should go to an editor.
    11093
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Trying to copy a pipeline template to 9tee4 fails
    11075
    Arvados
    36
    Bug
    1
    Rejected
    6
    71
    -c-a
    36
  • "Run a example test" Button.
    11026
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] [Python] When reading data through Collection et al., signatures should refresh automatically when needed
    10008
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [WB] 'Used by' tab empty when no graph is available
    11013
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] Avoid using "+" char in mount paths
    10978
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • arvados-cli gem dependency error
    10955
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Live stats should use consistent coloring for graphs
    10948
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [keepstore] switch from goamz to a more actively maintained client library
    10477
    Arvados
    36
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Crunch2] [API] return a more specific 422 error message when a client calls containers#unlock without having the lock
    10705
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] [SDKs] Mention in API docs and discovery doc that destroy=delete and index=list
    10946
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Spike] virtualenv arvados-cwl-runner
    10904
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Documentation] we should not use github.com copy of arvados in the tutorial
    10898
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [cwl] arvados-cwl-runner submitted job fails due to missing dependency futures>=3.0.5 in docker/jobs image
    10881
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] [SDKs] When client and server versions differ, the server must either implement the API the client expects, or return an error.
    10849
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Support array type input parameters to Workflows
    10830
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Don't create manifest with 0 length chunk
    10809
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [keepstore] Refactor volume Get/Put funcs to BlockReader/BlockWriter interfaces
    10794
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch2] Propagate error messages if sbatch command succeeds but crunch-run can't run (or can't log to the Arvados API)
    10729
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] pipeline_instance#show page should offer “Copy to project” and “Move pipeline instance” options like most other show pages
    10756
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • add a --user-script option to install-arvados-jobs-image
    10718
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] Missing docker_image link classes from API docs
    10721
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] "Public pipelines" on help menu links to wiki, not local public pipelines
    10715
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Deprecate arv-run
    10717
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Crunch2] crunch-run fails trying to set swappiness on ubuntu 1204 kernel
    10708
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Crunch1 jobs should still work on a slurm setup configured for Crunch2
    10689
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Doesn't kill itself when unhandled exceptions are raised during actor setup
    8871
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Python SDK] Document undocumented methods in RichCollectionBase
    10650
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • Unable to build arvados-cwl-runner in 9tee4 environment
    10643
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] a-c-r maximum recursion depth exceeded error
    10614
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • apps/workbench_functionals test failing
    10573
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • services/nodemanager test_time_timout failing
    10571
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • arvbox destroy fails because some files are owned by root
    10566
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • sometimes `arvbox reboot test` gets stuck asking for a sudo password
    10561
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Collection file count & size information don't get dynamically updated on collection update
    10554
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • arvados-git-httpd returns error '500' (Internal Server Error) when a request is not authorized
    10552
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • arvbox loops forever when something goes wrong
    10545
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • implement approximate (estimated) counts for API list method
    10543
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Keep] Share buffers between overlapping/consecutive GET requests for the same block
    10541
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • test suite hangs (in arvbox) in sdk/python test_callback
    10535
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Multiple links with the same relevant information can be created
    10532
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [crunchstat-summary] HTML plots should be a superset of text format output
    10531
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [crunch-job] use docker instead of docker.io
    10514
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Python SDK] Provide more control over pre-fetch behavior
    10493
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • Multiple virtual machines with the same hostname can be created
    10469
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Fix memory leak in Python SDK Collection class
    10445
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Performance][Workbench] While in a resource #show page, switching between tabs results in fetching the object again from API server. This can cause unacceptable amount of latency for large objects such as large pipeline instances and also to collections.
    10444
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • 4xphq keep balance api request causes oom on api server
    10408
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Node manager should fetch pricing information from cloud APIs
    10403
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [API] Remove unimplemented fields from api_client_authorization
    10405
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [CWL] Reduce redundant work with subworkflow RunInSingleContainer
    10402
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • Request collections that don't (yet) exist via fuse interface
    10388
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • Faster downloading using arv-get
    10387
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • In the arvados sso database, multiple identical clients can be created
    10386
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Add varchar_pattern_ops to all relevant PostgreSQL UUID indexes
    10354
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Enable refresh for "small" pipelines
    10355
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Import CWL workflow
    10344
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • remove the need of yum reinstall from the installation/upgrade of Rails based components
    10337
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • arvados-cwl-runner fails to find secondaryFiles
    10327
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Don't assume Switchyard config for SSH explanation
    10320
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] list of logins in the admin page isn't showing all logins
    10319
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] a-c-r option to resubmit failed jobs
    10328
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] add a configuration flag to hide compute nodes
    10309
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • Output glob "./" doesn't work as output from CWL workflow
    10308
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Centos7] [google_api_python_client] packaging with wrong permissions
    10296
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] [Workbench] Error out when unrecognized keys appear in config files
    10594
    Arvados
    36
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] Pipeline instance shows wrong button labels in tab area
    10265
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] Tries to run docker inside container where docker is not available, gives IOError
    10696
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDK] Convenience method for resolving project/file paths
    10268
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Performance][Workbench] Computing user notifications in topnav is expensive. Can the user's properties be used instead?
    10245
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Performance] Fetching the pipeline instance qr1hi-d1hrv-jl9fvzy3x8sdj8v seems to take too long
    10242
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Crunch1] Log the node properties at the start of a job
    10217
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • Efficient queries for notification menu items
    10213
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [CWL] arvados-cwl-runner may not be handling input files on keep mount correctly
    10206
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Arvados should be able to cat/zcat files in collections easily
    10191
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Node Manager] Support ephemeral additional storage for Azure node types that do not have sufficient instance storage
    10183
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • Provide more reasonable error messages for memory issues during container dispatch
    10182
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Confusing job duration reporting
    10177
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SSO] sso server adds multiple records without checking
    10167
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Jobs on dashboard say "No output" even when they have output
    10170
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Additional Crunch job logging controls
    10164
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • Automate starting/enabling services during Workbench and API package installation
    9960
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] In each request log entry, report time spent getting current permission graph
    10127
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] crunch-dispatch log throttling should not apply to its own stderr
    10120
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Python RichCollectionbase's find_or_create() method callers may assume that found object is of "create_type" type
    10097
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • RichCollectionBase's _get_src_target method would crash if "source" argument is not basestring and "target_path" is empty.
    10096
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • keep-balance reporting large numbers of replicas lost
    10084
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • queued jobs in Paused pipeline instances start running anyway
    10083
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • pipeline_instance state can be changed from `Complete` to `Paused`
    10080
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] ContainerRequest#show crashes "undefined method `each' for nil:NilClass"
    10040
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Move Container related documentation from wiki to code
    10027
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Double-clicking "show version" link causes modal deadlock
    10018
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Retrieve all log content directly from API instead of pre-rendering in Rails
    10007
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Python SDK should use a more recent version of the google api client library
    9989
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Testing] TestErrorDuringRsync_FakeDstKeepservers
    9985
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch2] [API] Permit container [request] with empty command (run default docker command)
    9969
    Arvados
    36
    Bug
    1
    In Progress
    2
    71
    -c-a
    36
  • [Crunch2] [API] Support container request expiry (expires_at)
    9968
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [CWL][Crunch][Crunch2] crunchrunner should ignore hidden directories when uploading to keep
    9965
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL][Crunch2][Crunch] crunchrunner should use CWL globs to output data to keep
    9964
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] arv-mount installation documentation not working
    9870
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] performance issues stat() in python
    9732
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] Undelete collections by moving them out of the TrashDirectory
    9591
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [keep-balance] Refuse to act when planning to delete data above an admin-specified threshold
    8179
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [keep-balance] Do not delete blocks referenced by collections with replication_desired=0
    9967
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • login-sync config file & systemd unit
    9958
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • nodemanager systemd unit
    9959
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] file upload should provide progress bar for overall upload, not just individual files
    9937
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • Workbench file upload should allow the selection of directories
    9936
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDK] portable_manifest_text() normalizes manifest, breaks CollectionReader() round trip
    9929
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] Python SDK duplicates resource attributes in top level of params
    9921
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] arv-put's default output includes both collection UUID and PDH
    8415
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [SDKs] Improve metadata created by arv-put
    3311
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench UI] Pipeline instances should have a link to view the CWL file used.
    9802
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [CWL] Creating intermediate folders in working directory (fails in cwl-runner)
    9755
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] UI should advance to new step when user submits their input
    9750
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] Secondary files entering into Arvados automatically
    9747
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Crunch2][Workbench] List both pipeline_templates and workflows on both pages
    9839
    Arvados
    36
    Story
    6
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Ability to add group from Groups admin page
    10142
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [keep-rsync] Rename "replications" to "replicas"
    9443
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [keep-balance] "Expedited delete" tool: perform garbage collection on some specific (recently deleted) collections, bypassing usual GC race protections
    9364
    Arvados
    36
    Feature
    2
    New
    1
    3.0
    3.0
    71
    -c-a
    36
  • [CWL] arvados-cwl-runner should reuse the most recent run
    9362
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [CWL] Jobs crash when arvados/jobs:latest is not suitable to run CWL jobs
    9659
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch2] crunch-dispatch-slurm can't successfully dispatch work when run from a directory it can't write to
    9630
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch2] Document/fix handling of collections with non-nil expires_at field
    9278
    Arvados
    36
    Story
    6
    In Progress
    2
    1.0
    1.0
    71
    -c-a
    36
  • [Data manager] Verbose reporting
    8912
    Arvados
    36
    Story
    6
    In Progress
    2
    0.5
    0.5
    71
    -c-a
    36
  • [Node Manager] huge virtual memory size
    8798
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Times out before API server loading active pipeline instances
    8504
    Arvados
    36
    Bug
    1
    Feedback
    4
    0.5
    0.5
    71
    -c-a
    36
  • [FUSE] rmdir on CollectionDirectory sets expires_at
    9592
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] Trash directory to list, inspect, and un-trash trashed collections
    9590
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] Don't display expiring collections in regular collection listings
    9584
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] Make .arvados#collection available in collection subdirectories
    9245
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [FUSE] .arvados#collection is missing or outdated after writing inside collection
    9244
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • add key/value support for tags
    8641
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Provenance Tracking] jobs refer to collections by uuids, not pdh
    8317
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • Add Gantt chart for pipeline optimization
    8254
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • get rid of dependencies python-pyasn1 python-pyasn1-modules
    7977
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] arv-mount is too slow for strelka
    7747
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Documentation] Write a Crunch2 wiki page
    7543
    Arvados
    36
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Documentation] Write a Crunch wiki page
    7542
    Arvados
    36
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [Crunchv2] python thread error after job success
    11027
    Arvados
    36
    Bug
    1
    New
    1
    71
    5
    -c-a
    36
  • [SDKs] PySDK fails to load CAs for SSL verification when run inside Conda
    8669
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] crunch-job can miss the final log output of a job
    8721
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [FUSE] When we give up trying to write a block, the next operation on the file should fail
    8148
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] Limit maximum wait time between retries
    8774
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Crunch] [UX] Standard excepthook to help debug job problems
    7328
    Arvados
    36
    Feature
    2
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] arv-copy fails to copy a Docker image specified with repo:tag syntax
    8315
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] The "Log" tab should have an notification that the job has been queued
    8901
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Less logging of tracebacks for routine exceptions
    8894
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Bad compute node address detection on private networks
    8346
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] WebSocketClient Exception 'NoneType' object is not callable
    8388
    Arvados
    36
    Bug
    1
    In Progress
    2
    0.5
    0.5
    71
    -c-a
    36
  • [Crunch] Log throttling shouldn't throttle logs from crunchstat, crunch-job
    8552
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] Add --umask, --fmask, --dmask options to control file permissions
    7831
    Arvados
    36
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Bad use of RetryLoop in events.py
    9141
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDK] arvados.arvfile.readall_decompressed() does not return all blocks on a file
    7156
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] Job was repeatedly retried on same bad compute node until abandoned
    8869
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Docs] Many tutorial instructions are wrong outside Curoverse clusters
    8387
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] No user profile should be required in the default configuration
    8830
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Docs] Document Git 1.7.10+ dependency for shell node and HTTPS Git cloning
    8778
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Docs/Workbench] Document how to clone repositories over HTTPS
    8781
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Docs/Workbench] Improve SSH agent documentation
    8775
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Workbench] Hide file preview buttons when preview isn't possible with current keep-web config
    7743
    Arvados
    36
    Bug
    1
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [PySDK] API client logs a warning when you create an object without an owner_uuid
    8885
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Node Manager] Broken nodes always get shut down, exempt from all node-counting considerations
    7980
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [NodeManager] Use sys.exc_clear() to release exception tracebacks
    8541
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Node Manager] Minimum idle time before node is eligible for shutdown
    8551
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Node Manager] qr1hi nodemanager can't start if ulimit is in place
    8686
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Go code to connect to the API server database and make basic sense of it
    8565
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] Go code to implement the Arvados API permissions model
    8566
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [API] List queries using "distinct" option return incorrect number of items_available
    8638
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] Should not be necessary to host git repos on the same host as API server
    6772
    Arvados
    36
    Bug
    1
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [FUSE] arv-mount should detect and log any files/dirs that are still open after unmounting
    8163
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [FUSE] Reset mount-tmp to the state of another collection
    7973
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Update run-command to use arv-mount --mount-tmp instead of staging directory
    7847
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [API] Job model validates that the script exists in the repository at script_version
    7621
    Arvados
    36
    Story
    6
    New
    1
    1.0
    1.0
    71
    -c-a
    36
  • [SDKs] Port arv-keepdocker to use the docker-py library
    9428
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] `arv keep docker` can upload an image already saved as .tar
    9045
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] `arv keep docker` can make links for an image already in a collection
    9147
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDKs] Clients can specify which auth config file to load.
    3897
    Arvados
    36
    Story
    6
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] PySDK one_task_per_input_file should support a num_retries argument
    7660
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SDKs] arv CLI program accepts "-" and "/path/to/file" as values for parameters that expect JSON (most notably the "body" parameter)
    8212
    Arvados
    36
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [SDKs] arv-copy continue on error
    8314
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [SDK] arv-copy better Git repository error reporting
    8313
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [FUSE] arv-mount exits non-zero if any I/O errors were returned
    8363
    Arvados
    36
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] Asset pipeline does not work unless config/environments/production.rb is present at buildtime and runtime
    6753
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] CSS+images missing on login_failure.html
    7312
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Crunch] crunch-dispatch should run the bundled version of crunch-job specified by Gemfile.lock
    7880
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [API] [Workbench] config:check catches and reports YAML parsing errors
    8195
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [SSO] [API] [Workbench] Have config:check sanity check secrets
    7323
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [API] [Workbench] Check for nonexistent config params during rake config:check
    7694
    Arvados
    36
    Feature
    2
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [CRUNCH] Fail gracefully when arvados repo doesn't exists
    8121
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Keep] keepstore status.json should report runtime environment
    7024
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Workbench] Crashes with Fiddlesticks when trying to view a pipeline instance graph copied from another cluster
    7008
    Arvados
    36
    Bug
    1
    New
    1
    0.5
    0.5
    71
    -c-a
    36
  • [Workbench] [Fiddlesticks] Live job log should show recent history
    5846
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [Workbench] Doesn't explain why a job can't be cancelled
    8399
    Arvados
    36
    Bug
    1
    New
    1
    71
    -c-a
    36
  • [Workbench] Show all known runtime_constraints in job status pane
    8091
    Arvados
    36
    Story
    6
    New
    1
    71
    -c-a
    36
  • [Node Manager] Detect and shut down nodes that fail provisioning in Azure
    8515
    Arvados
    36
    Feature
    2
    New
    1
    71
    -c-a
    36
  • [Keep] Keepstore and keepproxy support HTTP Range requests
    3734
    Arvados
    36
    Feature
    2
    New
    1
    2.0
    2.0
    71
    -c-a
    36
  • [SDKs] [FUSE] Python SDK and arv-mount use Range requests when a caller requests part of a block that has been ejected from the cache
    8228
    Arvados
    36
    Feature
    2