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Lightning deployment plan / Uploading data specificationsClosed50.50.5
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gVCF/VCF Tyler SpecificationClosed51.01.0
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Implement Annotation database in SpriteDuplicate7
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align2gvcf test suiteClosed52.02.0
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[API] Implement GET /callsets/{callset-name}/vcf API callClosed5
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[API] Implement "GET /assemblies" API CallsClosed5
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Ensure GFF to FASTJ in Lightning git repoClosed5
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FASTQ to FASTJ ImplementationClosed5
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CGF path vectors have no-calls on endClosed52.02.0
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[gff2fj] Does not correctly label no-calls at end of cytogenetic bandClosed5
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[gff2fj] Add in error checks to check common errors and do sanity checks on resulting FastJ filesClosed5
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Implement ProbabilisticPCA on Tiled GenomesClosed52.52.5
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Specify/Document how to use Lightning for family analysisClosed5
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Specify lifting-over assemblies that change the tagsClosed53.03.0
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Build support for lifting-over assemblies that change the tagsClosed5
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[Tyler] ImplementationClosed53.03.0
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[Sprite] Polyphen data addition to annotationsClosed5
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Test the effect of phasing imputation workflowResolved3
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Write phasing imputation workflowResolved3
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FastJ aggregation into SGLF takes too much memoryNew1
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[API] Implement GET /callsets/{callset-name}/gvcf API callNew1
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[API] Implement filtering on API callsNew11.01.0
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[API] [Documentation] Specify how to find the variants in a geneNew1
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[Documentation] [Sprite] [API] Specify API Calls and Database for phenotypes in SpriteNew12.02.0
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[Documentation] Specify batch API-like queriesNew12.02.0
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Create a API interface to the public tile library including a "beacon"New15.05.0
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Specify GA4GH API Implementation with LightningNew12.02.0
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Package lightning specifically for usersNew15.05.0
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Automatic Deployment ImplementationNew15.05.0
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pasta rotini-fastj does not handle tagset without ending newlineNew1
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Imputation and phasing flag in CGF dataNew1
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Create tests for 'tile-npy' programsNew1
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Covnert hg19 to FastJ and CGFNew13.03.0
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Convert Harvard PGP exome data to CGFNew1
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Documentation current speed of concordance and other statsNew12.02.0
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[API] Implement GET /callsets/{callset-name}/tile-variantsNew12.02.0
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Implement annotation on Tile LibraryNew13.03.0
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Annotate Tiling 1.0 public libraryNew13.03.0
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Extend CGF to include genotypingNew11.01.0
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Convert openSNP genotyping data to CGFNew14.04.0
Product Backlog