Arvados 1.3

Please review the Upgrading Arvados page for any special upgrade notes.
https://doc.arvados.org/admin/upgrading.html

Major new features:

Distributed Workflows - https://doc.arvados.org/user/cwl/federated-workflows.html
Federated Identity - https://doc.arvados.org/admin/merge-remote-account.html
Collection Versions - https://doc.arvados.org/user/topics/collection-versioning.html
final pieces of Crunch 2 migration documentation - https://doc.arvados.org/admin/upgrade-crunch2.html
Improved WebDAV with better support for Windows and OS X clients
“Failing” Status for Containers - when children have failed and overall workflow will eventually fail
a number of small improvements to crunchstat-summary, especially for Crunch 2 (12690, 12748, 13759)

09/05/2018

	#	Tracker	Subject	Story Points
	14152	Bug	[keepstore] S3 support for AWS4-HMAC-SHA256 required for Frankfurt	0.5
				0.5

09/19/2018

#	Tracker	Subject	Story Points
14087	Feature	[controller] Fetch remote-hosted collections by PDH	2.0
14203	Bug	Container fails when initial working directory and output share a directory
13994	Feature	[Keepstore] Fetch blocks from federated clusters	3.0
13773	Feature	"Will fail" status for failing (but not yet failed) containers	3.0
13993	Feature	[API] Fetch remote-hosted collection by UUID	2.0
14082	Bug	[c-d-s] validation needs to be done if outdirMin is a number with decimals
13973	Bug	CR Priority does not propagate to children
			10.0

10/03/2018

#	Tracker	Subject	Story Points
13573	Feature	GA4GH WES action items from Toronto	1.0
13619	Feature	[Controller] Federated multi object retrieval	3.0
10181	Feature	Crunch job output logging improvement stories	2.0
14201	Feature	[API] Accept "exclude_home_project" flag in groups#contents	1.0
14197	Feature	[controller] Federated container requests	2.0
13752	Bug	Cannot find collection using exact file name	0.5
14242	Idea	[controller] Verify hash on manifest text when querying by PDH	0.5
14236	Bug	[WebDAV] Can't delete the last file in a collection
10865	Feature	[Crunch2] [Crunch1] Disable crunch1 APIs by default on new installs	0.5
13493	Feature	Federated record retrieval	1.0
			11.5

10/17/2018

#	Tracker	Subject	Story Points
14285	Feature	[keep-balance] metrics endpoint	1.0
13964	Bug	crunch-dispatch-cloud spike	1.0
14274	Bug	"FactoryGirl" deprecation warning in API tests
14196	Feature	[API] issues v2 format auth tokens	1.0
14199	Feature	[keepstore] copy block from remote keepstore to local keepstore	2.0
14086	Idea	[keep-web] Serve previous collection versions	0.5
12690	Bug	crunchstat-summary --container-request does not report on keep i/o
12748	Bug	[crunch2] crunchstat-summary doesn't report elapsed time for crunch2 jobs
13759	Bug	crunchstat-summary Error parsing value
			5.5

10/31/2018

#	Tracker	Subject	Story Points
14407	Bug	[Workbench] tests fail on current version of firefox
14337	Bug	[1.2.0] search performance regression on e51c5
14388	Bug	[keep-balance] reporting or replication accounting bug
14398	Bug	[keep-balance] deadlock on index retrieval error
14299	Idea	[keep-balance] Ensure blocks referenced by old collection versions are safe from garbage collection	1.0
14260	Feature	[API] Add "runtime_token" field to container_requests	1.0
14366	Idea	Crunch 1 to Crunch 2 migration documentation
13561	Feature	[API] Store, and add APIs to retrieve, previous versions of collection objects	0.5
14377	Bug	[API] 401 on 4xphq with generated token
			2.5

11/14/2018

#	Tracker	Subject	Story Points
14475	Bug	[Controller] POST .../collections/$uuid seems to have broken Workbench integration tests
14458	Bug	[controller] collection federation panic send on closed channel
14397	Bug	[keepstore] S3 (frankfurt): delete calls fail with "A header you provided implies functionality that is not implemented"
14455	Bug	[API][Workbench] Security vulnerability on loofah dependency
14406	Feature	[SDK] Go collection uses copy remote block to local keepstore	2.0
14259	Feature	[SDK] Python collection class uses copy remote block to local keepstore	2.0
14262	Feature	[Controller] Specify runtime_token when creating container requests on a remote cluster	2.0
14328	Bug	[e51c5] crunch-run <-> docker issues
14323	Feature	[API] Accept container mounts that specify both uuid and portable_data_hash	1.0
			7.0

11/28/2018

#	Tracker	Subject	Story Points
14507	Bug	[controller] database ping failed
14497	Bug	[API][Workbench] Security vulnerability on rack
14423	Bug	[keepstore] Misleading log messages say Deleted but mean "marked as trash"
14419	Bug	[keepstore] while deleting a lot of blocks: fatal error: concurrent map writes
14516	Bug	[api] merged account usernames should be taken into account when calculating the next available username
14519	Bug	[Workbench] Textile table markup
14520	Bug	SSO security issue
14440	Idea	Write user documentation for writing and running distributed workflows	1.0
14345	Bug	[webdav] Windows/Mac compatibility -- empty folders and locking
14441	Bug	[sso] merge account feature issues
13197	Idea	Support distributed analysis across clusters in a Roche federation
13109	Feature	Support collection versions
13932	Idea	[Epic] Roche 2018 NRE
14483	Idea	Update ruaml version for a-c-r
14198	Feature	[CWL] run steps on remote clusters	3.0
			4.0

12/12/2018

#	Tracker	Subject	Story Points
14583	Bug	dockerCollectionPDH breaks cwltool in RunInSingleContainer
14576	Bug	[1.3.0] performance: slow postgres collections queries
14551	Bug	[Workbench] As an admin, using the "Log in as..." button uses v1 tokens
14560	Bug	[1.3.0] error: ERROR: string is too long for tsvector (2299194 bytes, max 1048575 bytes)
			0.0

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