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Interpretation automation

over 4 years late (06/30/2020) (Sprint start date 06/23/2020)

80%

31 issues   (23 closed — 8 open)

Interpretation automation

About Tapestry

Tapestry handles participant interaction for Personal Genome Projects. It is in production use at the Harvard and UK Personal Genome Projects. It is free software licensed under the GNU Affero General Public Licence v3 or later, and the source code is available on Github.

Installation

Installing the Tapestry application
Set up an OAuth service

Development

Customization
Internationalization
Theming
Development cycle → for hackers and committers

Specifications, requirements, plans

Design sketches → for sample tracking and GET-Evidence-2
Plug-in system notes
Account suspension, deactivation, withdrawal
Submitting data from a third-party study

Issues by
Bug

1/1
Feature

4/9
Task

18/21
Related issues
# Subject Story Points
Feature #9027 Incorporate coverage info from get-evidence dataset_reports in publication statistics
Feature #8707 Arvados job: download data from remote site into Keep 1.0
Feature #8689 Trigger an arvados job to retrieve the data and import it into Keep 1.0
Feature #8697 Check for finished download/processing jobs 1.0
Feature #8698 When UserFile data is updated, if it has a suitable data type, submit report-generator jobs 2.0
Feature #8701 Arvados job/pipeline generates ClinVar HTML report from VCF 2.0
Feature #8700 Arvados job/pipeline generates GET-Evidence HTML report from VCF 2.0
Feature #8699 Add report status/links to "show user_files" page 1.0
Feature #8688 Accept authenticated API calls from data providers to add datasets to a public profile 2.0
Bug #8710 Check UserFiles too when checking for Datasets that are ready to publish 0.5
12.5