Arvados

Story

Resolved

Closed

Rejected

Sprint Impediments

5834

[API] Be careful about memory usage when responding to collections#index queries

Brett Smith

impediments

-c-a

6456

Review arvados-dev branch 6389-add-dockerfiles

Ward Vandewege

6389

impediments

-c-a

3412

[API] Full collection view in list returned by api server

Brett Smith

impediments

-c-a

3410

[API] Rename collection "desired replication" attributes, add model constraints

Tom Clegg

impediments

-c-a

6074

[API] collections are being returned too slowly + NoMemoryError

Tom Clegg

impediments

-c-a

6619

[Deployment] [Documentation] Install system-wide git credential helper for arvados-hosted https git-urls

Nico César

288

impediments

-c-a

6617

[Workbench] [Documentation] Display https url in repositories panel in manage_account page. Update documentation as needed.

Radhika Chippada

impediments

-c-a

3411

[API] Implement Trash behavior using collection expiration

Tim Pierce

impediments

-c-a

3414

[Keep] Keep Server accepts list of blocks to pull from other servers

Tim Pierce

impediments

-c-a

3413

[Keep] Keep Server accepts list of trashable blocks

Tim Pierce

impediments

-c-a

6497

[Deployment] Separate package upload portions of run-build-packages.sh to a separate script

Brett Smith

impediments

-c-a

6272

[Keep] keepstored index response should have an EOF marker to enable the client to detect an incomplete response.

Tom Clegg

impediments

-c-a

3409

Use collection owner field

impediments

-c-a

6497 6497 Brett Smith Brett Smith 79 Deployment 60 Deployment [Deployment] Separate package upload portions of run-build-packages.sh to a separate script Resolved Resolved 3 2.0 2.0 2.0 6497 36 79 100 1 2.0	6502 6502 Extract existing uploader code from run-build-packages.sh into a separate script Brett Smith 79 0 6497 3 36 -c-a 5 6503 6503 Parameterize the upload script to upload packages for the specified distribution(s) Brett Smith 79 0 6497 3 36 -c-a 5 6533 6533 Review arvados-dev branch 6497-separate-package-upload-wip Nico César 288 0 6497 3 36 -c-a 5
6499 6499 Tom Clegg Tom Clegg 3 Documentation 58 Documentation [Documentation] Review 6438-multiplatform-install-guide-wip Resolved Resolved 3 1.0 1.0 1.0 6499 36 3 100 1 1.0	6648 6648 Review 6438-multiplatform-install-guide-TC Tom Clegg 3 0 6499 3 36 -c-a 5 6526 6526 Try Ubuntu 12.04 install Tom Clegg 3 0 6499 3 36 -c-a 5 6525 6525 Try CentOS 6 install Tom Clegg 3 0 6499 3 36 -c-a 5
6264 6264 Peter Amstutz Peter Amstutz 47 [CWL] Prototype Arvados CWL pipeline runner Resolved Resolved 3 1.0 1.0 1.0 6264 36 47 100 6 1.0	6294 6294 Review 6264-cwl-runner Peter Amstutz 47 0 6264 3 36 -c-a 5 6365 6365 Write runner using cwltool and run-command Peter Amstutz 47 0 6264 3 36 -c-a 5 6464 6464 Review 6264-run-command-task-env Peter Amstutz 47 0 6264 3 36 -c-a 5
6473 6473 Radhika Chippada Radhika Chippada 72 SDKs 54 SDKs [SDKs] arv-ws supports an option to show events starting from a given time Resolved Resolved 3 0.5 0.5 0.5 6473 36 72 100 6 0.5	6536 6536 Review branch: 6473-fetch-events-starting-at Radhika Chippada 72 0 6473 3 36 -c-a 5
6589 6589 Tom Clegg Tom Clegg 3 Documentation 58 Documentation [Documentation] API installation guide needs to set ARVADOS_WEBSOCKETS in Puma sample script Resolved Resolved 3 0.5 0.5 0.5 6589 36 3 100 1 0.5
6465 6465 Manoj Malipeddu Manoj Malipeddu 312 [Tests] Optimize workbench integration tests Resolved Resolved 3 6465 36 312 100 6	6632 6632 Review Branch 6465-optimize-workbench-integration-tests Manoj Malipeddu 312 0 6465 3 36 -c-a 5
3408 3408 Peter Amstutz Peter Amstutz 47 Keep 53 Keep [Keep] Implement Production Data Manager Resolved Resolved 3 1.0 1.0 1.0 3408 36 47 100 6 1.0	6613 6613 Merge 3408 Peter Amstutz 47 0 3408 3 36 -c-a 5 6108 6108 Review data manager Misha Zatsman 82 0 3408 3 36 -c-a 5 4941 4941 Review 3408-go-sdk-api-errors Misha Zatsman 82 0 3408 3 36 -c-a 5
6617 6617 Radhika Chippada Radhika Chippada 72 Workbench 56 Workbench [Workbench] [Documentation] Display https url in repositories panel in manage_account page. Update documentation as needed. Resolved Resolved 3 1.0 1.0 1.0 6617 36 72 100 6 1.0	6670 6670 Review branch: 6617-doc-repo-https-url Radhika Chippada 72 0 6617 3 36 -c-a 5 6660 6660 Display https url in repositories panel in manage_account page Manoj Malipeddu 312 0 6617 3 36 -c-a 5 6662 6662 Document https url in repositories Radhika Chippada 72 0 6617 3 36 -c-a 5 6665 6665 Review Branch 6617-display-https-url Manoj Malipeddu 312 0 6617 3 36 -c-a 5
6604 6604 Manoj Malipeddu Manoj Malipeddu 312 Workbench 56 Workbench [Workbench] Notification menu should not prompt the user to upload an SSH key when a Web shell is available Resolved Resolved 3 0.5 0.5 0.5 6604 36 312 100 1 0.5	6650 6650 Review Branch 6604-notification-menu-no-prompt Radhika Chippada 72 0 6604 3 36 -c-a 5
6619 6619 Nico César Nico César 288 Deployment 60 Deployment [Deployment] [Documentation] Install system-wide git credential helper for arvados-hosted https git-urls Resolved Resolved 3 6619 36 288 100 2	6671 6671 Review branch: 6619-doc-update Radhika Chippada 72 0 6619 3 36 -c-a 5
5898 5898 Tests 59 Tests [Tests] Race condition in test_KeepProxyTest1 (tests.test_keep_client.KeepProxyTestCase) e.g. build 1550 Resolved Resolved 3 0.5 0.5 0.5 5898 36 100 1 0.5	6618 6618 Review 5898-listen-race Tom Clegg 3 0 5898 3 36 -c-a 5
6610 6610 Tom Clegg Tom Clegg 3 API 57 API [API] [Webshell] shell accounts should be created even if the user has not added an SSH key Resolved Resolved 3 0.5 0.5 0.5 6610 36 3 100 1 0.5	6633 6633 Review 6610-login-without-ssh-key Tom Clegg 3 0 6610 3 36 -c-a 5
5288 5288 Bryan Cosca Bryan Cosca 189 Documentation 58 Documentation [Documentation] Write user guide for arv-copy Resolved Resolved 3 2.0 2.0 2.0 5288 36 189 100 1 2.0		6286 6286 Review branch: 5288-arv-copy-documentation Bryan Cosca 189 0 5288 5 36 -c-a 5
6219 6219 Radhika Chippada Radhika Chippada 72 FUSE 69 FUSE [FUSE] [Performance] Add performance tests for FUSE Resolved Resolved 3 0.5 0.5 0.5 6219 36 72 100 1 0.5	6452 6452 Review branch: 6219-fuse-performance-testing (from 3198-writable-fuse) branch Peter Amstutz 47 0 6219 3 36 -c-a 5
6484 6484 Peter Amstutz Peter Amstutz 47 FUSE 69 FUSE [FUSE] fsync on read-only collection returns EROFS Resolved Resolved 3 0.5 0.5 0.5 6484 36 47 100 1 0.5	6616 6616 Fix Peter Amstutz 47 0 6484 3 36 -c-a 5 6609 6609 Review 6484-fuse-fsync-erofs Radhika Chippada 72 0 6484 3 36 -c-a 5
6014 6014 Radhika Chippada Radhika Chippada 72 Documentation 58 Documentation [Documentation] Document repository creation in the Arvados tutorial Resolved Resolved 3 0.5 0.5 0.5 6014 36 72 100 1 0.5		6285 6285 Review branch: 6014-repo-creation-doc Bryan Cosca 189 0 6014 5 36 -c-a 5
6096 6096 Ward Vandewege Ward Vandewege 1 [OPS] Implement a process to regularly deploy a Docker image for running jobs to Arvados clusters Resolved Resolved 3 0.5 0.5 0.5 6096 36 1 100 6 0.5	6237 6237 create debian package for Workbench Ward Vandewege 1 0 6096 3 36 -c-a 5 6586 6586 figure out arv-keepdocker permissions issue on 4xphq In docker-jobs-image ci run: Status: Downloaded newer image for arvados/jobs:c47db46c7f2aac3ad1b099d8716c44dbb9f8bbf6 Traceback (most recent call last): File "/usr/local/bin/arv-keepdocker", line 4, in <module> main() File "/usr/local/lib/python2.7/dist-packages/arvados/commands/keepdocker.py", line 332, in main ).execute(num_retries=args.retries)['items'] File "/usr/local/lib/python2.7/dist-packages/oauth2client/util.py", line 137, in positional_wrapper return wrapped(args, *kwargs) File "/usr/local/lib/python2.7/dist-packages/googleapiclient/http.py", line 723, in execute raise HttpError(resp, content, uri=self.uri) arvados.errors.ApiError: <HttpError 403 when requesting https://4xphq.arvadosapi.com/arvados/v1/links?alt=json&filters=%5B%5B%22link_class%22%2C+%22%3D%22%2C+%22docker_image_hash%22%5D%2C+%5B%22name%22%2C+%22%3D%22%2C+%2205c977e2d29d561d97ed0acc5de3c0462beed1aefa7bbe0b07b6322e27ed4037%22%5D%5D returned "Forbidden"> Ward Vandewege 1 0 6096 3 36 -c-a 5 6528 6528 split off arvados/jobs docker image from docker image then put it in a separate build step in front of the deploy step Ward Vandewege 1 0 6096 3 36 -c-a 5 6569 6569 clean up and test arvados/jobs image No longer needed: rvm, gems, fuse Ward Vandewege 1 0 6096 3 36 -c-a 5 6119 6119 Review 6096-deploy-jobs-image Ward Vandewege 1 0 6096 3 36 -c-a 5 6236 6236 create debian package for API server Ward Vandewege 1 0 6096 3 36 -c-a 5 6241 6241 review 6096-package-rails-apps Ward Vandewege 1 0 6096 3 36 -c-a 5 6573 6573 review 6569-smarter-jobs-image Tom Clegg 3 0 6096 3 36 -c-a 5 6136 6136 review 6135-docker-git-tag Nico César 288 0 6096 3 36 -c-a 5 6135 6135 'docker' jenkins jobs has to tag with the git revision on push Nico César 288 0 6096 3 36 -c-a 5
6279 6279 Radhika Chippada Radhika Chippada 72 [Workbench] Integrate a Web shell client Resolved Resolved 3 1.0 1.0 1.0 6279 36 72 100 6 1.0	6292 6292 Review branch: 6279-web-shell-client Tom Clegg 3 0 6279 3 36 -c-a 5
6218 6218 Tom Clegg Tom Clegg 3 SDKs 54 SDKs [SDKs] [Performance] Add performance tests for Python SDK collection methods Resolved Resolved 3 0.5 0.5 0.5 6218 36 3 100 6 0.5	6371 6371 Add performance profiling framework to python sdk As Listed in https://arvados.org/issues/6218#note-5, add bits needed to perform performance profiling in python SDK. Radhika Chippada 72 0 6218 3 36 -c-a 5 6372 6372 Review branch: 6218-add-performance-profiling-to-python-sdk Tom Clegg 3 0 6218 3 36 -c-a 5 6293 6293 Review 6218-python-sdk-perf @ commit:d4c6c7c Tom Clegg 3 0 6218 3 36 -c-a 5
6477 6477 Brett Smith Brett Smith 79 Workbench 56 Workbench [Documentation] Clarify the use of Docker within shared and private VMs Resolved Resolved 3 0.5 0.5 0.5 6477 36 79 100 6 0.5	6535 6535 Review wiki update 33 Bryan Cosca 189 0 6477 3 36 -c-a 5
6265 6265 Peter Amstutz Peter Amstutz 47 [CWL] Contribute to the CWL specification Resolved Resolved 3 1.0 1.0 1.0 6265 36 47 100 6 1.0	6290 6290 Review specification Peter Amstutz 47 0 6265 3 36 -c-a 5 6364 6364 Process remaining draft 2 change requests Peter Amstutz 47 0 6265 3 36 -c-a 5