Arvados

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Resolved

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Sprint Impediments

7176

[OPS] Build an Azure compute node image

Peter Amstutz

impediments

-c-a

8422

[Microsoft] [M1] Organize input data

Jiayong Li

303

impediments

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8530

[Microsoft] [M1] Generate SNAP-based CWL pipelines using bcbio

Sarah Guthrie

184

impediments

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8577

[Microsoft] [M1] Create collection with necessary reference data needed by bcbio

Bryan Cosca

189

impediments

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8724

[Keep] Block validation script

Radhika Chippada

impediments

-c-a

8819

[Microsoft] [M1] bcbio/bcbio docker image contains GATK

Brad Chapman

188

impediments

-c-a

8855

[Microsoft] Add explicit sort in postprocess_alignment, recreate, and reupload the bcbio docker image

Brad Chapman

188

impediments

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8946

[Roche Dx] Correlate RSEM/EBSeq with qPCR

Sarah Guthrie

184

impediments

-c-a

8884 8884 Bryan Cosca Bryan Cosca 189 Documentation 58 Documentation [Docs] Pipeline author guide gives a basic demonstration of writing a pipeline template Resolved Resolved 3 1.0 1.0 1.0 8884 36 189 133 6 1.0	8968 8968 Review Sarah Guthrie 184 0 8884 3 36 -c-a 5	8984 8984 Review Brett Smith 79 0 8884 5 36 -c-a 5
8940 8940 Bryan Cosca Bryan Cosca 189 Documentation 58 Documentation [Docs] Write "How to optimize a pipeline" Page Resolved Resolved 3 1.0 1.0 1.0 8940 36 189 133 6 1.0	8967 8967 Review Sarah Guthrie 184 0 8940 3 36 -c-a 5 8983 8983 Review Tom Clegg 3 0 8940 3 36 -c-a 5
8931 8931 Peter Amstutz Peter Amstutz 47 SDKs 54 SDKs [SDK] websocket event thread crash Resolved Resolved 3 0.5 0.5 0.5 8931 36 47 133 1 0.5	8977 8977 Review 8931-event-thread-catch-exceptions Radhika Chippada 72 0 8931 3 36 -c-a 5
8936 8936 Radhika Chippada Radhika Chippada 72 [Keepstore+API] Feed configured TTL into the real Keep block signing key Resolved Resolved 3 1.0 1.0 1.0 8936 36 72 133 6 1.0	8989 8989 Review branch 8936-ttl-in-signing-key Radhika Chippada 72 0 8936 3 36 -c-a 5 9038 9038 Review branch 8936-ttl-in-signing-key for proper handling of ttl in keep-block-check and keep-rsync. Tom Clegg 3 0 8936 3 36 -c-a 5 9039 9039 Update the Upgrading_to_master wiki page https://dev.arvados.org/projects/arvados/wiki/Upgrading_to_master Radhika Chippada 72 0 8936 3 36 -c-a 5
8831 8831 Tom Clegg Tom Clegg 3 Crunch 52 Crunch [Docs] Document installing crunchrunner on the compute nodes Resolved Resolved 3 0.5 0.5 0.5 8831 36 3 133 6 0.5	8981 8981 Update docs Tom Clegg 3 0 8831 3 36 -c-a 5 8987 8987 Review 8831-crunchrunner-doc Tom Clegg 3 0 8831 3 36 -c-a 5
8980 8980 Peter Amstutz Peter Amstutz 47 [CWL] Polish Arvados CWL runner deployment & conformance tests Resolved Resolved 3 1.0 1.0 1.0 8980 36 47 133 6 1.0	8985 8985 CWL conformance passing on ci.commonwl.org and ci.curoverse.com Peter Amstutz 47 0 8980 3 36 -c-a 5
8953 8953 Brett Smith Brett Smith 79 [Node manager] can not shut down nodes anymore Resolved Resolved 3 8953 36 79 133 1	8957 8957 Review 8953-node-manager-prevent-shutdown-eligible-flapping-wip 0 8953 3 36 -c-a 5