Story Resolved Closed
Sprint Impediments
8819
[Microsoft] [M1] bcbio/bcbio docker image contains GATK
Brad Chapman
188
0
3
impediments
-c-a
6
8855
[Microsoft] Add explicit sort in postprocess_alignment, recreate, and reupload the bcbio docker image
Brad Chapman
188
0
3
impediments
-c-a
1
7176
[OPS] Build an Azure compute node image
Peter Amstutz
47
0
3
impediments
-c-a
6
8577
[Microsoft] [M1] Create collection with necessary reference data needed by bcbio
Bryan Cosca
189
0
3
impediments
-c-a
6
8422
[Microsoft] [M1] Organize input data
Jiayong Li
303
0
3
impediments
-c-a
6
8724
[Keep] Block validation script
Radhika Chippada
72
0
3
impediments
-c-a
6
8530
[Microsoft] [M1] Generate SNAP-based CWL pipelines using bcbio
Sarah Guthrie
184
0
3
impediments
-c-a
6
8946
[Roche Dx] Correlate RSEM/EBSeq with qPCR
Sarah Guthrie
184
0
3
impediments
-c-a
6
8884
8884
Bryan Cosca
[Docs] Pipeline author guide gives a basic demonstration of writing a pipeline template
Resolved
1.0
8884
36
189
133
6
1.0
8968
Review
Sarah Guthrie
184
0
8884
3
36
-c-a
5
8984
Review
Brett Smith
79
0
8884
5
36
-c-a
5
8940
8940
Bryan Cosca
[Docs] Write "How to optimize a pipeline" Page
Resolved
1.0
8940
36
189
133
6
1.0
8967
Review
Sarah Guthrie
184
0
8940
3
36
-c-a
5
8983
Review
Tom Clegg
3
0
8940
3
36
-c-a
5
8931
8931
Peter Amstutz
[SDK] websocket event thread crash
Resolved
0.5
8931
36
47
133
1
0.5
8977
Review 8931-event-thread-catch-exceptions
Radhika Chippada
72
0
8931
3
36
-c-a
5
8936
8936
Radhika Chippada
[Keepstore+API] Feed configured TTL into the real Keep block signing key
Resolved
1.0
8936
36
72
133
6
1.0
8989
Review branch 8936-ttl-in-signing-key
Radhika Chippada
72
0
8936
3
36
-c-a
5
9038
Review branch 8936-ttl-in-signing-key for proper handling of ttl in keep-block-check and keep-rsync.
Tom Clegg
3
0
8936
3
36
-c-a
5
9039
Update the Upgrading_to_master wiki page
Radhika Chippada
72
0
8936
3
36
-c-a
5
8831
8831
Tom Clegg
[Docs] Document installing crunchrunner on the compute nodes
Resolved
0.5
8831
36
3
133
6
0.5
8981
Update docs
Tom Clegg
3
0
8831
3
36
-c-a
5
8987
Review 8831-crunchrunner-doc
Tom Clegg
3
0
8831
3
36
-c-a
5
8980
8980
Peter Amstutz
[CWL] Polish Arvados CWL runner deployment & conformance tests
Resolved
1.0
8980
36
47
133
6
1.0
8985
CWL conformance passing on ci.commonwl.org and ci.curoverse.com
Peter Amstutz
47
0
8980
3
36
-c-a
5
8953
8953
Brett Smith
[Node manager] can not shut down nodes anymore
Resolved
8953
36
79
133
1
8957
Review 8953-node-manager-prevent-shutdown-eligible-flapping-wip
0
8953
3
36
-c-a
5
0
-c-a
0
impediments
-c-a
April 29, 2016 14:36:24.5128331184387207 +0000