Arvados

Story

Resolved

Sprint Impediments

9071

[OPS] Set up a new cluster for Microsoft

Nico César

288

impediments

-c-a

9495

arvados.errors.KeepWriteError: failed to write ...: no Keep services available ((False, 0))

impediments

-c-a

9074

[Microsoft] [bcbio] Enable bcbio generation of CWL to flag gVCF output for GATK Haplotypecaller

Brad Chapman

188

impediments

-c-a

9073

[Microsoft] [bcbio] Enable bcbio generation of CWL to flag gVCF output for Freebayes

Brad Chapman

188

impediments

-c-a

9349

[OPS] f48sn node/core limit increase

Ward Vandewege

impediments

-c-a

9113

[Microsoft] [bcbio] Enable bcbio generation of CWL to flag gVCF output for Platypus

Brad Chapman

188

impediments

-c-a

9322

[OPS] Add Terraform snippets for S3 blob storage

Nico César

288

impediments

-c-a

8750

[OPS] deploy script to run in parallel

Nico César

288

impediments

-c-a

9060

[bcbio] Automatically generate CWL workflows that take advantage of Arvados provenance

Brad Chapman

188

impediments

-c-a

8016 8016 Tom Clegg Tom Clegg 3 [Crunch2] Report statistics Resolved Resolved 3 1.0 1.0 1.0 8016 36 3 138 2 1.0	9481 9481 Refactor crunchstat as a module Tom Clegg 3 0 8016 3 36 -c-a 5 9482 9482 Use crunchstat in crunch-run to report container resource usage Tom Clegg 3 0 8016 3 36 -c-a 5 9484 9484 Review 8016-crunchrun-crunchstat Radhika Chippada 72 0 8016 3 36 -c-a 5
9498 9498 Radhika Chippada Radhika Chippada 72 Workbench 56 Workbench [Workbench] Show top-level container_requests in project jobs&pipelines tab and omit jobs from this tab. Resolved Resolved 3 1.0 1.0 1.0 9498 36 72 138 6 1.0	9509 9509 Review branch 9498-containers-in-project-tab Radhika Chippada 72 0 9498 3 36 -c-a 5
9407 9407 Radhika Chippada Radhika Chippada 72 [Workbench] Implement container log viewer (live + saved) using work unit model Resolved Resolved 3 1.0 1.0 1.0 9407 36 72 138 6 1.0	9470 9470 Review branch 9407-container-log-viewer Radhika Chippada 72 0 9407 3 36 -c-a 5
9513 9513 Tom Clegg Tom Clegg 3 Keep 53 Keep [Keep] keepproxy should not set content-length to -1 when responding 411 Length Required Resolved Resolved 3 0.5 0.5 0.5 9513 36 3 138 1 0.5	9517 9517 Review 9513-keepproxy-content-length Tom Clegg 3 0 9513 3 36 -c-a 5
9511 9511 [CWL] Update arvados-cwl-runner to fix workflow type checking bug Resolved Resolved 3 9511 36 138 1
9442 9442 Peter Amstutz Peter Amstutz 47 [CWL] runtime.outdir is not set to task.outdir by arvados-cwl-runner Resolved Resolved 3 0.5 0.5 0.5 9442 36 47 138 1 0.5	9462 9462 Review 9442-cwl-runtime-outdir Peter Amstutz 47 0 9442 3 36 -c-a 5 9475 9475 Investigate Peter Amstutz 47 0 9442 3 36 -c-a 5
9446 9446 Lucas Di Pentima Lucas Di Pentima 375 [SDK] Refactor keep parallel write strategy Resolved Resolved 3 1.0 1.0 1.0 9446 36 375 138 6 1.0	9469 9469 Review 9446-refactor-keep-parallel-write-strategy Peter Amstutz 47 0 9446 3 36 -c-a 5
9491 9491 Tom Clegg Tom Clegg 3 Keep 53 Keep [keepproxy] Does not respect X-Keep-Desired-Replicas Resolved Resolved 3 0.5 0.5 0.5 9491 36 3 138 1 0.5	9493 9493 Review 9491-desired-replicas Tom Clegg 3 0 9491 3 36 -c-a 5
8470 8470 Tom Clegg Tom Clegg 3 Crunch 52 Crunch [Crunch2] [API] Use exact values for runtime_constraints and mounts in Container records Resolved Resolved 3 1.0 1.0 1.0 8470 36 3 138 2 1.0	9477 9477 Use numbers for runtime constraints Tom Clegg 3 0 8470 3 36 -c-a 5 9478 9478 Resolve collections to PDH Tom Clegg 3 0 8470 3 36 -c-a 5 9479 9479 Resolve docker image tag to PDH Tom Clegg 3 0 8470 3 36 -c-a 5 9480 9480 Review 8470-resolve-container-req Radhika Chippada 72 0 8470 3 36 -c-a 5