Arvados

Story

Resolved

Sprint Impediments

9711 9711 Peter Amstutz Peter Amstutz 47 [CWL] wiki page with architecture arvados-CWL integration Resolved Resolved 3 0.5 0.5 0.5 9711 36 47 141 6 0.5	9715 9715 Review Peter Amstutz 47 0 9711 3 36 -c-a 5
9684 9684 Radhika Chippada Radhika Chippada 72 API 57 API [Crunch2] [API] Add Workflow resource Resolved Resolved 3 2.0 2.0 2.0 9684 36 72 141 6 2.0	9720 9720 Review branch 9684-workflows Radhika Chippada 72 0 9684 3 36 -c-a 5
9784 9784 Peter Amstutz Peter Amstutz 47 run-deploy.sh scopes are wrong Resolved Resolved 3 0.5 0.5 0.5 9784 36 47 141 1 0.5	9785 9785 Review 9784-update-scopes Peter Amstutz 47 0 9784 3 36 -c-a 5
9552 9552 Radhika Chippada Radhika Chippada 72 Performance 70 Performance [CWL] arvados-cwl-runner runs too slowly when reusing jobs Resolved Resolved 3 0.5 0.5 0.5 9552 36 72 141 1 0.5	9553 9553 Review branch 9552-compute-checksum-flag Radhika Chippada 72 0 9552 3 36 -c-a 5 9735 9735 Review 9552-compute-checksum-final-output 0 9552 3 36 -c-a 5 9734 9734 Compute checksum on final output Peter Amstutz 47 0 9552 3 36 -c-a 5 9610 9610 Add compute_checksum flag to cwltool and submit a PR Radhika Chippada 72 0 9552 3 36 -c-a 5
9615 9615 Peter Amstutz Peter Amstutz 47 Crunch 52 Crunch [CWL] Flag "writable" InitialWorkDirRequirement as unsupported under Crunch v1 Resolved Resolved 3 0.5 0.5 0.5 9615 36 47 141 1 0.5	9733 9733 Review 9615-cwl-writable-unsupported 0 9615 3 36 -c-a 5
9769 9769 [CWL] When a CWL job is executed in crunch1, the pipeline instance created never completes even after all required jobs are completed Resolved Resolved 3 9769 36 141 1
9678 9678 Radhika Chippada Radhika Chippada 72 [Crunch2] [Workbench] container_request log tab is empty, even when the container log tab shows information Resolved Resolved 3 1.0 1.0 1.0 9678 36 72 141 1 1.0	9728 9728 Review branch 9678-container-request-log-tab Radhika Chippada 72 0 9678 3 36 -c-a 5
9658 9658 Radhika Chippada Radhika Chippada 72 [Crunch2] arvados-cwl-runner --api=containers returns a container uuid. It should return a container_request uuid. Resolved Resolved 3 0.5 0.5 0.5 9658 36 72 141 6 0.5	9714 9714 Review branch 9658-cwl-runner-container Radhika Chippada 72 0 9658 3 36 -c-a 5
9745 9745 Tom Clegg Tom Clegg 3 Crunch 52 Crunch [Crunch2] crunch-dispatch-slurm can get API host and token from config.json Resolved Resolved 3 0.5 0.5 0.5 9745 36 3 141 6 0.5	9754 9754 Review 9745-cds-api-config Tom Clegg 3 0 9745 3 36 -c-a 5
9595 9595 Tom Clegg Tom Clegg 3 [Crunch2] Support "json" mount type in crunch-run Resolved Resolved 3 0.5 0.5 0.5 9595 36 3 141 2 0.5	9731 9731 mount json via readonly tempfile Tom Clegg 3 0 9595 3 36 -c-a 5 9726 9726 Review 9595-mount-json Peter Amstutz 47 0 9595 3 36 -c-a 5
9406 9406 Tom Clegg Tom Clegg 3 Crunch 52 Crunch [Crunch2] Crunch-run supports using existing cgroup to apply resource allocation Resolved Resolved 3 1.0 1.0 1.0 9406 36 3 141 2 1.0	9675 9675 Experiments Tom Clegg 3 0 9406 3 36 -c-a 5 9698 9698 Review 9406-cgroup-parent Tom Clegg 3 0 9406 3 36 -c-a 5
9677 9677 Ward Vandewege Ward Vandewege 1 Documentation 58 Documentation [Docs] Install guide needs to create arvados/jobs:latest Docker image as a standard object Resolved Resolved 3 0.5 0.5 0.5 9677 36 1 141 6 0.5	9729 9729 review 9677-update-install-docs Ward Vandewege 1 0 9677 3 36 -c-a 5
9674 9674 Peter Amstutz Peter Amstutz 47 [CWL] InitialWorkDirRequirement not working as expected Resolved Resolved 3 0.5 0.5 0.5 9674 36 47 141 1 0.5	9708 9708 Review 9674-cwl-initialworkdir Peter Amstutz 47 0 9674 3 36 -c-a 5